Strain Fitness in Pseudomonas sp. RS175 around PFR28_03349

Experiment: pyruvate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pyruvate (C)
3,855,760	+		PFR28_03347	0.23	+0.5
3,855,760	+		PFR28_03347	0.23	+1.3
3,855,760	+		PFR28_03347	0.23	-0.7
3,855,761	-		PFR28_03347	0.23	+0.7
3,855,777	+		PFR28_03347	0.26	+0.1
3,855,778	-		PFR28_03347	0.26	-0.4
3,855,778	-		PFR28_03347	0.26	-0.4
3,855,913	-		PFR28_03347	0.48	+0.1
3,855,913	-		PFR28_03347	0.48	+0.1
3,856,182	+				-0.2
3,856,183	-				-0.3
3,856,242	+				-0.2
3,856,242	+				+0.3
3,856,311	+		PFR28_03348	0.16	-0.6
3,856,312	-		PFR28_03348	0.16	+0.3
3,856,312	-		PFR28_03348	0.16	-0.3
3,856,312	-		PFR28_03348	0.16	+1.3
3,856,410	+		PFR28_03348	0.34	-0.7
3,856,410	+		PFR28_03348	0.34	+0.8
3,856,410	+		PFR28_03348	0.34	-2.5
3,856,410	+		PFR28_03348	0.34	-0.1
3,856,411	-		PFR28_03348	0.35	-0.3
3,856,411	-		PFR28_03348	0.35	+1.1
3,856,411	-		PFR28_03348	0.35	+0.1
3,856,472	+		PFR28_03348	0.46	-0.3
3,856,473	-		PFR28_03348	0.46	+0.0
3,856,490	+		PFR28_03348	0.49	+0.2
3,856,490	+		PFR28_03348	0.49	-0.4
3,856,490	+		PFR28_03348	0.49	+0.5
3,856,490	+		PFR28_03348	0.49	+0.2
3,856,490	+		PFR28_03348	0.49	+0.1
3,856,490	+		PFR28_03348	0.49	-1.7
3,856,491	-		PFR28_03348	0.50	+0.6
3,856,491	-		PFR28_03348	0.50	+0.6
3,856,491	-		PFR28_03348	0.50	+0.3
3,856,491	-		PFR28_03348	0.50	+0.0
3,856,491	-		PFR28_03348	0.50	+0.7
3,856,491	-		PFR28_03348	0.50	+1.3
3,856,491	-		PFR28_03348	0.50	-0.4
3,856,782	-				+1.3
3,856,782	-				+0.3
3,856,831	+		PFR28_03349	0.12	+0.1
3,856,831	+		PFR28_03349	0.12	+0.3
3,856,832	-		PFR28_03349	0.12	-1.5
3,856,862	+		PFR28_03349	0.17	+0.6
3,856,932	+		PFR28_03349	0.28	+0.6
3,856,948	+		PFR28_03349	0.30	-0.7
3,856,948	+		PFR28_03349	0.30	+0.3
3,856,948	+		PFR28_03349	0.30	+1.2
3,856,948	+		PFR28_03349	0.30	-0.6
3,856,948	+		PFR28_03349	0.30	-1.3
3,856,948	+		PFR28_03349	0.30	+0.3
3,856,948	+		PFR28_03349	0.30	+0.6
3,856,948	+		PFR28_03349	0.30	+2.4
3,856,948	+		PFR28_03349	0.30	-0.3
3,856,948	+		PFR28_03349	0.30	+0.4
3,856,949	-		PFR28_03349	0.30	+1.0
3,856,949	-		PFR28_03349	0.30	+0.1
3,856,949	-		PFR28_03349	0.30	-2.3
3,856,978	+		PFR28_03349	0.35	-0.5
3,856,978	+		PFR28_03349	0.35	+0.0
3,856,978	+		PFR28_03349	0.35	+0.0
3,856,978	+		PFR28_03349	0.35	+0.4
3,856,979	-		PFR28_03349	0.35	-0.7
3,856,999	+		PFR28_03349	0.38	+0.5
3,856,999	+		PFR28_03349	0.38	+0.6
3,856,999	+		PFR28_03349	0.38	+0.2
3,857,000	-		PFR28_03349	0.38	-0.3
3,857,137	-		PFR28_03349	0.60	+0.7
3,857,266	+		PFR28_03349	0.80	+0.3
3,857,267	-		PFR28_03349	0.80	-1.3
3,857,267	-		PFR28_03349	0.80	+0.1
3,857,308	+		PFR28_03349	0.86	+0.6
3,857,308	+		PFR28_03349	0.86	+3.6
3,857,308	+		PFR28_03349	0.86	-0.4
3,857,368	+				+0.4
3,857,368	+				-0.8
3,857,368	+				+2.1
3,857,368	+				-0.7
3,857,368	+				+0.0
3,857,369	-				-0.2
3,857,460	+				+0.8
3,857,460	+				+1.3
3,857,460	+				+0.3
3,857,460	+				+0.9
3,857,460	+				-0.2
3,857,461	-				+0.3
3,857,462	+				+0.9
3,857,462	+				-2.1
3,857,462	+				-0.1
3,857,462	+				-0.5
3,857,462	+				+1.9
3,857,462	+				-1.3
3,857,462	+				+1.6
3,857,462	+				-1.3
3,857,462	+				+1.5
3,857,462	+				-0.5
3,857,462	+				-0.2
3,857,462	+				+0.2
3,857,462	+				+0.4
3,857,463	-				-0.5
3,857,463	-				+0.4
3,857,463	-				+1.0
3,857,463	-				+0.9
3,857,463	-				-1.8
3,857,463	-				-0.2
3,857,463	-				+0.2
3,857,463	-				+0.9
3,857,463	-				+1.9
3,857,463	-				+0.2
3,857,463	-				+0.7
3,857,484	+				+1.3
3,857,484	+				-0.1
3,857,485	-				-0.1
3,857,485	-				+1.0
3,857,485	-				-0.3
3,857,507	+				-0.1
3,857,508	-				-0.1
3,857,508	-				-1.5
3,857,508	-				-2.9
3,857,513	+				+0.6
3,857,514	-				+0.2
3,857,530	+		PFR28_03350	0.15	+0.8
3,857,530	+		PFR28_03350	0.15	+1.1
3,857,530	+		PFR28_03350	0.15	+1.5
3,857,530	+		PFR28_03350	0.15	-0.0
3,857,530	+		PFR28_03350	0.15	-0.2
3,857,531	-		PFR28_03350	0.16	+0.9
3,857,531	-		PFR28_03350	0.16	+1.7
3,857,531	-		PFR28_03350	0.16	+0.3
3,857,689	+				-0.3
3,857,689	+				+3.7
3,857,689	+				+0.7
3,857,689	+				-1.0
3,857,689	+				+0.5
3,857,690	-				+0.1
3,857,690	-				-0.4
3,857,690	-				+1.0
3,857,690	-				+0.2
3,857,715	+				-0.3
3,857,722	+				-1.1
3,857,722	+				-0.5
3,857,722	+				+1.1
3,857,754	+				+0.1
3,857,754	+				-1.9
3,857,755	-				+0.2
3,857,822	+		PFR28_03351	0.13	+0.7
3,857,822	+		PFR28_03351	0.13	+0.7
3,857,822	+		PFR28_03351	0.13	+0.5
3,857,822	+		PFR28_03351	0.13	+1.2
3,857,822	+		PFR28_03351	0.13	+0.1
3,857,822	+		PFR28_03351	0.13	+0.2
3,857,822	+		PFR28_03351	0.13	+0.6
3,857,823	-		PFR28_03351	0.13	-0.1
3,857,823	-		PFR28_03351	0.13	-2.3
3,857,823	-		PFR28_03351	0.13	-0.3
3,857,823	-		PFR28_03351	0.13	+0.9
3,857,823	-		PFR28_03351	0.13	+0.2
3,857,826	+		PFR28_03351	0.14	-0.4
3,857,826	+		PFR28_03351	0.14	+0.1
3,857,827	-		PFR28_03351	0.14	+0.4
3,857,977	-		PFR28_03351	0.38	+0.4
3,857,977	-		PFR28_03351	0.38	-0.7
3,857,999	+		PFR28_03351	0.41	+2.3
3,857,999	+		PFR28_03351	0.41	-0.2
3,858,000	-		PFR28_03351	0.41	+0.2
3,858,000	-		PFR28_03351	0.41	-0.0
3,858,037	+		PFR28_03351	0.47	-1.5
3,858,038	-		PFR28_03351	0.48	+0.5
3,858,316	+				-0.3
3,858,317	-				+0.3
3,858,317	-				+0.0
3,858,317	-				+2.6
3,858,360	+				+0.5