Strain Fitness in Pseudomonas sp. RS175 around PFR28_03187

Experiment: pyruvate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pyruvate (C)
3,693,361	+		PFR28_03186	0.26	+0.1
3,693,361	+		PFR28_03186	0.26	-0.2
3,693,362	-		PFR28_03186	0.26	-0.8
3,693,362	-		PFR28_03186	0.26	-1.0
3,693,428	+		PFR28_03186	0.32	+0.1
3,693,428	+		PFR28_03186	0.32	-0.8
3,693,428	+		PFR28_03186	0.32	-0.4
3,693,429	-		PFR28_03186	0.32	-0.0
3,693,429	-		PFR28_03186	0.32	-0.5
3,693,606	+		PFR28_03186	0.47	-0.0
3,693,606	+		PFR28_03186	0.47	-0.3
3,693,606	+		PFR28_03186	0.47	-0.4
3,693,606	+		PFR28_03186	0.47	-1.3
3,693,606	+		PFR28_03186	0.47	+1.0
3,693,606	+		PFR28_03186	0.47	-0.6
3,693,606	+		PFR28_03186	0.47	-0.3
3,693,606	+		PFR28_03186	0.47	-0.3
3,693,606	+		PFR28_03186	0.47	-2.2
3,693,606	+		PFR28_03186	0.47	-0.9
3,693,606	+		PFR28_03186	0.47	+0.3
3,693,607	-		PFR28_03186	0.47	-0.4
3,693,607	-		PFR28_03186	0.47	+0.2
3,693,607	-		PFR28_03186	0.47	+1.0
3,693,607	-		PFR28_03186	0.47	-2.6
3,693,607	-		PFR28_03186	0.47	+1.9
3,693,984	+		PFR28_03186	0.80	+1.8
3,693,985	-		PFR28_03186	0.80	-0.5
3,694,172	-				+0.6
3,694,247	+				+0.3
3,694,247	+				+1.7
3,694,247	+				+0.1
3,694,247	+				+0.8
3,694,248	-				-0.2
3,694,248	-				+0.8
3,694,248	-				-0.2
3,694,266	+				+1.2
3,694,266	+				+1.8
3,694,267	-				-1.0
3,694,308	+				-1.3
3,694,394	-				-0.1
3,694,394	-				+0.5
3,694,394	-				+0.2
3,694,481	+		PFR28_03187	0.14	+1.3
3,694,482	-		PFR28_03187	0.14	-0.9
3,694,482	-		PFR28_03187	0.14	+0.0
3,694,482	-		PFR28_03187	0.14	-1.5
3,694,482	-		PFR28_03187	0.14	+0.4
3,694,482	-		PFR28_03187	0.14	-0.1
3,694,482	-		PFR28_03187	0.14	-2.0
3,694,493	+		PFR28_03187	0.15	-1.2
3,694,493	+		PFR28_03187	0.15	+0.8
3,694,493	+		PFR28_03187	0.15	+1.1
3,694,493	+		PFR28_03187	0.15	-1.9
3,694,493	+		PFR28_03187	0.15	-0.0
3,694,493	+		PFR28_03187	0.15	+0.1
3,694,493	+		PFR28_03187	0.15	-0.1
3,694,493	+		PFR28_03187	0.15	+0.5
3,694,493	+		PFR28_03187	0.15	-0.3
3,694,493	+		PFR28_03187	0.15	+0.3
3,694,494	-		PFR28_03187	0.15	-0.4
3,694,494	-		PFR28_03187	0.15	+0.3
3,694,494	-		PFR28_03187	0.15	-2.4
3,694,494	-		PFR28_03187	0.15	+1.3
3,694,494	-		PFR28_03187	0.15	-0.1
3,694,494	-		PFR28_03187	0.15	+0.6
3,694,494	-		PFR28_03187	0.15	+1.2
3,694,494	-		PFR28_03187	0.15	+0.1
3,694,494	-		PFR28_03187	0.15	+0.1
3,694,494	-		PFR28_03187	0.15	-0.3
3,694,494	-		PFR28_03187	0.15	+0.6
3,694,494	-		PFR28_03187	0.15	+0.2
3,694,494	-		PFR28_03187	0.15	-0.9
3,694,494	-		PFR28_03187	0.15	+1.0
3,694,494	-		PFR28_03187	0.15	-1.7
3,694,494	-		PFR28_03187	0.15	+0.8
3,694,599	+		PFR28_03187	0.24	-1.5
3,694,669	+		PFR28_03187	0.30	-0.9
3,694,670	-		PFR28_03187	0.30	-0.3
3,694,719	+		PFR28_03187	0.34	+0.3
3,694,719	+		PFR28_03187	0.34	+0.4
3,694,720	-		PFR28_03187	0.34	-1.3
3,694,720	-		PFR28_03187	0.34	-0.8
3,694,720	-		PFR28_03187	0.34	-0.0
3,694,720	-		PFR28_03187	0.34	+0.4
3,694,720	-		PFR28_03187	0.34	+1.5
3,694,720	-		PFR28_03187	0.34	+0.7
3,694,721	+		PFR28_03187	0.34	+1.6
3,694,721	+		PFR28_03187	0.34	-0.8
3,694,721	+		PFR28_03187	0.34	-1.3
3,694,721	+		PFR28_03187	0.34	-0.7
3,694,721	+		PFR28_03187	0.34	-0.0
3,694,721	+		PFR28_03187	0.34	-1.3
3,694,721	+		PFR28_03187	0.34	-1.6
3,694,722	-		PFR28_03187	0.34	+0.9
3,694,722	-		PFR28_03187	0.34	-0.0
3,694,722	-		PFR28_03187	0.34	+0.3
3,694,722	-		PFR28_03187	0.34	+0.3
3,694,722	-		PFR28_03187	0.34	+0.8
3,694,722	-		PFR28_03187	0.34	+0.1
3,694,722	-		PFR28_03187	0.34	-0.2
3,694,722	-		PFR28_03187	0.34	-0.2
3,694,722	-		PFR28_03187	0.34	+0.7
3,694,722	-		PFR28_03187	0.34	-0.1
3,694,722	-		PFR28_03187	0.34	+0.4
3,694,722	-		PFR28_03187	0.34	-1.9
3,694,722	-		PFR28_03187	0.34	+0.3
3,694,722	-		PFR28_03187	0.34	+0.7
3,694,722	-		PFR28_03187	0.34	-1.4
3,694,829	+		PFR28_03187	0.43	-0.0
3,694,829	+		PFR28_03187	0.43	-0.6
3,694,830	-		PFR28_03187	0.43	+1.2
3,694,870	+		PFR28_03187	0.47	+0.5
3,694,870	+		PFR28_03187	0.47	+0.2
3,694,871	-		PFR28_03187	0.47	-0.6
3,694,871	-		PFR28_03187	0.47	-2.0
3,694,976	+		PFR28_03187	0.56	-1.5
3,694,976	+		PFR28_03187	0.56	-0.8
3,694,976	+		PFR28_03187	0.56	-1.2
3,694,977	-		PFR28_03187	0.56	-0.6
3,694,977	-		PFR28_03187	0.56	+0.5
3,694,977	-		PFR28_03187	0.56	-0.5
3,694,977	-		PFR28_03187	0.56	-1.1
3,695,016	-		PFR28_03187	0.59	-0.1
3,695,251	+		PFR28_03187	0.79	-0.4
3,695,251	+		PFR28_03187	0.79	-1.2
3,695,251	+		PFR28_03187	0.79	+0.1
3,695,251	+		PFR28_03187	0.79	+1.2
3,695,251	+		PFR28_03187	0.79	-0.3
3,695,251	+		PFR28_03187	0.79	+0.6
3,695,251	+		PFR28_03187	0.79	+1.2
3,695,252	-		PFR28_03187	0.79	+0.2
3,695,252	-		PFR28_03187	0.79	-0.1
3,695,252	-		PFR28_03187	0.79	-1.4
3,695,252	-		PFR28_03187	0.79	-0.2
3,695,252	-		PFR28_03187	0.79	-0.3
3,695,297	+		PFR28_03187	0.82	+0.4
3,695,297	+		PFR28_03187	0.82	+0.8
3,695,298	-		PFR28_03187	0.83	-1.3
3,695,348	+		PFR28_03187	0.87	+0.6
3,695,348	+		PFR28_03187	0.87	+0.3
3,695,348	+		PFR28_03187	0.87	+0.6
3,695,349	-		PFR28_03187	0.87	+0.8
3,695,349	-		PFR28_03187	0.87	+0.8
3,695,349	-		PFR28_03187	0.87	+0.3
3,695,349	-		PFR28_03187	0.87	-0.1
3,695,349	-		PFR28_03187	0.87	-0.9
3,695,350	+		PFR28_03187	0.87	-1.5
3,695,350	+		PFR28_03187	0.87	-0.7
3,695,350	+		PFR28_03187	0.87	+0.5
3,695,350	+		PFR28_03187	0.87	+0.4
3,695,350	+		PFR28_03187	0.87	-1.0
3,695,351	-		PFR28_03187	0.87	-0.1
3,695,351	-		PFR28_03187	0.87	-1.2
3,695,351	-		PFR28_03187	0.87	+0.5
3,695,351	-		PFR28_03187	0.87	+0.2
3,695,351	-		PFR28_03187	0.87	+0.5
3,695,351	-		PFR28_03187	0.87	-0.0
3,695,351	-		PFR28_03187	0.87	+1.0
3,695,351	-		PFR28_03187	0.87	+1.1
3,695,351	-		PFR28_03187	0.87	+1.3
3,695,351	-		PFR28_03187	0.87	-0.0
3,695,351	-		PFR28_03187	0.87	+1.3
3,695,351	-		PFR28_03187	0.87	-0.0
3,695,351	-		PFR28_03187	0.87	+0.8
3,695,402	+				-1.5
3,695,402	+				+0.8
3,695,403	-				+0.2
3,695,411	+				-0.2
3,695,411	+				+0.2
3,695,411	+				-0.9
3,695,411	+				+0.1
3,695,411	+				+1.3
3,695,411	+				+0.1
3,695,411	+				+0.9
3,695,412	-				-0.1
3,695,412	-				-0.6
3,695,412	-				-1.5
3,695,412	-				+0.4
3,695,412	-				+0.6
3,695,616	+				-1.6
3,695,616	+				+1.0
3,695,617	-				+1.6
3,695,619	+				-1.5
3,695,619	+				+0.2
3,695,619	+				+0.3
3,695,619	+				+0.8
3,695,619	+				+0.3
3,695,619	+				+0.1
3,695,619	+				-0.0
3,695,619	+				-0.3
3,695,619	+				+0.1
3,695,619	+				-0.4
3,695,619	+				+1.0
3,695,619	+				-0.4
3,695,619	+				-0.9
3,695,620	-				-0.4
3,695,620	-				+0.0
3,695,631	-				-0.1
3,695,631	-				+1.3
3,695,853	+		PFR28_03188	0.45	+0.5
3,695,853	+		PFR28_03188	0.45	-0.5
3,695,853	+		PFR28_03188	0.45	-1.0
3,695,854	-		PFR28_03188	0.45	+0.6
3,695,854	-		PFR28_03188	0.45	-0.8
3,695,854	-		PFR28_03188	0.45	+0.5
3,695,854	-		PFR28_03188	0.45	+0.8
3,695,854	-		PFR28_03188	0.45	-0.6
3,695,854	-		PFR28_03188	0.45	+0.5
3,695,890	+		PFR28_03188	0.52	-0.2
3,695,890	+		PFR28_03188	0.52	+0.7
3,695,891	-		PFR28_03188	0.52	+1.0
3,695,977	-		PFR28_03188	0.68	-0.6
3,695,977	-		PFR28_03188	0.68	-0.2
3,696,118	+				-2.5
3,696,360	+				-1.7
3,696,360	+				-2.8
3,696,360	+				-1.4
3,696,360	+				-1.5
3,696,360	+				-1.9
3,696,360	+				-1.4
3,696,360	+				-0.3
3,696,360	+				-1.5
3,696,360	+				-0.3
3,696,360	+				-0.7
3,696,360	+				-1.6
3,696,360	+				-2.7
3,696,360	+				-3.2
3,696,360	+				-1.6
3,696,360	+				-2.2
3,696,361	-				-0.7
3,696,361	-				-1.8
3,696,361	-				+0.3
3,696,361	-				-2.2
3,696,361	-				+0.2
3,696,361	-				-0.8
3,696,361	-				-1.4
3,696,361	-				-2.9
3,696,361	-				+0.6
3,696,361	-				-1.1
3,696,361	-				+1.9
3,696,361	-				-0.9
3,696,361	-				-0.5
3,696,362	+				-0.1
3,696,362	+				-2.9
3,696,362	+				-0.5
3,696,363	-				-3.3
3,696,363	-				-2.1
3,696,363	-				-0.3
3,696,363	-				+0.6
3,696,390	+				-0.0
3,696,390	+				-0.4
3,696,390	+				+0.1
3,696,391	-				-2.0
3,696,391	-				-2.1
3,696,391	-				-2.7
3,696,441	+				-1.7
3,696,441	+				-3.3
3,696,441	+				-0.1
3,696,442	-				-0.6
3,696,462	+				+0.6
3,696,462	+				-0.4
3,696,462	+				-0.9
3,696,462	+				+0.8
3,696,463	-				-2.6
3,696,463	-				-0.5
3,696,463	-				-3.6
3,696,463	-				+1.3
3,696,463	-				+0.3
3,696,463	-				-1.5
3,696,463	-				-0.6