Strain Fitness in Pseudomonas sp. RS175 around PFR28_03185

Experiment: pyruvate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pyruvate (C)
3,690,134	+		PFR28_03183	0.57	-0.8
3,690,159	-		PFR28_03183	0.59	-0.9
3,690,159	-		PFR28_03183	0.59	-0.2
3,690,159	-		PFR28_03183	0.59	+3.1
3,690,185	+		PFR28_03183	0.62	-1.6
3,690,185	+		PFR28_03183	0.62	-0.2
3,690,264	+		PFR28_03183	0.70	-1.0
3,690,304	+		PFR28_03183	0.74	-0.7
3,690,305	-		PFR28_03183	0.74	+0.0
3,690,462	+				-2.4
3,690,462	+				-1.6
3,690,463	-				-2.2
3,690,487	+				+0.8
3,690,487	+				-1.5
3,690,487	+				+0.3
3,690,488	-				+1.1
3,690,488	-				-0.4
3,690,550	+				+0.4
3,690,550	+				+0.2
3,690,550	+				+1.3
3,690,551	-				-1.4
3,690,588	+				+0.3
3,690,588	+				+0.2
3,690,589	-				-0.4
3,690,733	+		PFR28_03184	0.20	-1.1
3,690,733	+		PFR28_03184	0.20	-0.8
3,690,733	+		PFR28_03184	0.20	+0.3
3,690,734	-		PFR28_03184	0.20	+0.3
3,690,734	-		PFR28_03184	0.20	+0.4
3,690,734	-		PFR28_03184	0.20	-1.1
3,690,844	+		PFR28_03184	0.55	-1.4
3,690,845	-		PFR28_03184	0.56	-0.7
3,690,845	-		PFR28_03184	0.56	+0.3
3,690,845	-		PFR28_03184	0.56	-0.1
3,690,845	-		PFR28_03184	0.56	-1.4
3,690,863	+		PFR28_03184	0.61	+0.5
3,690,863	+		PFR28_03184	0.61	-0.9
3,690,864	-		PFR28_03184	0.62	-0.4
3,691,204	+				-0.5
3,691,205	-				-0.2
3,691,205	-				+0.2
3,691,385	+		PFR28_03185	0.16	-0.3
3,691,385	+		PFR28_03185	0.16	+0.6
3,691,415	+		PFR28_03185	0.17	+0.4
3,691,416	-		PFR28_03185	0.18	+1.3
3,691,416	-		PFR28_03185	0.18	+0.3
3,691,426	-		PFR28_03185	0.18	-0.9
3,691,473	+		PFR28_03185	0.21	+0.0
3,691,473	+		PFR28_03185	0.21	-0.5
3,691,474	-		PFR28_03185	0.21	+0.4
3,691,496	+		PFR28_03185	0.22	-0.7
3,691,505	+		PFR28_03185	0.22	-1.8
3,691,505	+		PFR28_03185	0.22	-0.4
3,691,505	+		PFR28_03185	0.22	+0.9
3,691,506	-		PFR28_03185	0.22	+0.4
3,691,506	-		PFR28_03185	0.22	-0.6
3,691,508	+		PFR28_03185	0.22	-0.9
3,691,508	+		PFR28_03185	0.22	+0.5
3,691,508	+		PFR28_03185	0.22	+1.9
3,691,508	+		PFR28_03185	0.22	-1.0
3,691,509	-		PFR28_03185	0.23	+1.3
3,691,509	-		PFR28_03185	0.23	+0.2
3,691,509	-		PFR28_03185	0.23	-1.0
3,691,509	-		PFR28_03185	0.23	+0.3
3,691,509	-		PFR28_03185	0.23	-0.2
3,691,640	+		PFR28_03185	0.29	+0.6
3,691,640	+		PFR28_03185	0.29	-1.7
3,691,640	+		PFR28_03185	0.29	-1.3
3,691,641	-		PFR28_03185	0.30	-0.0
3,691,641	-		PFR28_03185	0.30	-0.4
3,691,706	+		PFR28_03185	0.33	+1.5
3,691,706	+		PFR28_03185	0.33	-1.9
3,691,707	-		PFR28_03185	0.33	-0.5
3,691,707	-		PFR28_03185	0.33	+0.6
3,691,707	-		PFR28_03185	0.33	+0.7
3,691,707	-		PFR28_03185	0.33	+0.9
3,691,707	-		PFR28_03185	0.33	-0.3
3,691,707	-		PFR28_03185	0.33	+0.1
3,691,707	-		PFR28_03185	0.33	-0.4
3,691,707	-		PFR28_03185	0.33	-1.0
3,691,707	-		PFR28_03185	0.33	+0.2
3,691,793	-		PFR28_03185	0.38	-0.7
3,691,793	-		PFR28_03185	0.38	-1.5
3,691,892	+		PFR28_03185	0.43	-0.4
3,691,892	+		PFR28_03185	0.43	+1.0
3,691,893	-		PFR28_03185	0.43	-0.7
3,691,893	-		PFR28_03185	0.43	-0.8
3,691,893	-		PFR28_03185	0.43	+0.6
3,691,893	-		PFR28_03185	0.43	+0.3
3,691,893	-		PFR28_03185	0.43	+0.1
3,691,907	+		PFR28_03185	0.44	+0.7
3,691,907	+		PFR28_03185	0.44	-0.0
3,691,907	+		PFR28_03185	0.44	-0.8
3,691,908	-		PFR28_03185	0.44	+0.0
3,691,908	-		PFR28_03185	0.44	-2.1
3,691,908	-		PFR28_03185	0.44	+0.9
3,691,923	+		PFR28_03185	0.45	+2.6
3,691,924	-		PFR28_03185	0.45	-0.7
3,691,976	-		PFR28_03185	0.47	+0.3
3,692,032	+		PFR28_03185	0.50	+0.3
3,692,032	+		PFR28_03185	0.50	-1.0
3,692,032	+		PFR28_03185	0.50	+0.0
3,692,032	+		PFR28_03185	0.50	+0.1
3,692,032	+		PFR28_03185	0.50	-0.9
3,692,032	+		PFR28_03185	0.50	-0.3
3,692,032	+		PFR28_03185	0.50	-0.6
3,692,032	+		PFR28_03185	0.50	+0.8
3,692,033	-		PFR28_03185	0.50	+1.3
3,692,033	-		PFR28_03185	0.50	+0.5
3,692,033	-		PFR28_03185	0.50	-0.2
3,692,033	-		PFR28_03185	0.50	-1.2
3,692,204	+		PFR28_03185	0.60	-0.3
3,692,205	-		PFR28_03185	0.60	+0.2
3,692,205	-		PFR28_03185	0.60	-0.2
3,692,226	-		PFR28_03185	0.61	+1.0
3,692,226	-		PFR28_03185	0.61	+0.1
3,692,226	-		PFR28_03185	0.61	-1.0
3,692,226	-		PFR28_03185	0.61	+0.3
3,692,257	-		PFR28_03185	0.62	+0.1
3,692,445	-		PFR28_03185	0.72	-0.1
3,692,445	-		PFR28_03185	0.72	-0.3
3,692,573	+		PFR28_03185	0.79	+1.0
3,692,574	-		PFR28_03185	0.79	+0.1
3,692,578	+		PFR28_03185	0.80	+0.6
3,692,638	+		PFR28_03185	0.83	+1.1
3,692,638	+		PFR28_03185	0.83	+1.6
3,692,638	+		PFR28_03185	0.83	+1.6
3,692,638	+		PFR28_03185	0.83	-0.4
3,692,639	-		PFR28_03185	0.83	-0.9
3,692,639	-		PFR28_03185	0.83	+0.7
3,692,639	-		PFR28_03185	0.83	-0.1
3,692,639	-		PFR28_03185	0.83	-0.1
3,692,639	-		PFR28_03185	0.83	-0.2
3,692,639	-		PFR28_03185	0.83	-0.7
3,692,639	-		PFR28_03185	0.83	+0.3
3,692,639	-		PFR28_03185	0.83	+0.0
3,692,785	+				-0.3
3,692,970	+				+0.1
3,692,970	+				+0.3
3,692,970	+				-0.4
3,692,970	+				-1.0
3,692,970	+				+0.2
3,692,970	+				-0.3
3,692,970	+				+1.1
3,692,971	-				-0.1
3,692,971	-				-1.4
3,692,971	-				+0.9
3,693,063	+				-2.9
3,693,064	-				-0.9
3,693,064	-				-0.6
3,693,127	+				-0.6
3,693,127	+				+0.9
3,693,165	-				-0.2
3,693,241	-		PFR28_03186	0.16	-1.6
3,693,361	+		PFR28_03186	0.26	+0.1
3,693,361	+		PFR28_03186	0.26	-0.2
3,693,362	-		PFR28_03186	0.26	-0.8
3,693,362	-		PFR28_03186	0.26	-1.0
3,693,428	+		PFR28_03186	0.32	+0.1
3,693,428	+		PFR28_03186	0.32	-0.8
3,693,428	+		PFR28_03186	0.32	-0.4
3,693,429	-		PFR28_03186	0.32	-0.0
3,693,429	-		PFR28_03186	0.32	-0.5
3,693,606	+		PFR28_03186	0.47	-0.0
3,693,606	+		PFR28_03186	0.47	-0.3
3,693,606	+		PFR28_03186	0.47	-0.4
3,693,606	+		PFR28_03186	0.47	-1.3
3,693,606	+		PFR28_03186	0.47	+1.0
3,693,606	+		PFR28_03186	0.47	-0.6
3,693,606	+		PFR28_03186	0.47	-0.3
3,693,606	+		PFR28_03186	0.47	-0.3
3,693,606	+		PFR28_03186	0.47	-2.2
3,693,606	+		PFR28_03186	0.47	-0.9
3,693,606	+		PFR28_03186	0.47	+0.3
3,693,607	-		PFR28_03186	0.47	-0.4
3,693,607	-		PFR28_03186	0.47	+0.2
3,693,607	-		PFR28_03186	0.47	+1.0
3,693,607	-		PFR28_03186	0.47	-2.6
3,693,607	-		PFR28_03186	0.47	+1.9