Strain Fitness in Pseudomonas sp. RS175 around PFR28_02950

Experiment: pyruvate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pyruvate (C)
3,457,260	+		PFR28_02948	0.44	+0.1
3,457,260	+		PFR28_02948	0.44	+0.9
3,457,261	-		PFR28_02948	0.44	-0.1
3,457,262	+		PFR28_02948	0.44	+0.8
3,457,262	+		PFR28_02948	0.44	+0.7
3,457,262	+		PFR28_02948	0.44	-0.4
3,457,262	+		PFR28_02948	0.44	-0.8
3,457,262	+		PFR28_02948	0.44	-0.6
3,457,262	+		PFR28_02948	0.44	-0.2
3,457,262	+		PFR28_02948	0.44	+0.4
3,457,262	+		PFR28_02948	0.44	+1.7
3,457,262	+		PFR28_02948	0.44	-0.1
3,457,262	+		PFR28_02948	0.44	+1.7
3,457,262	+		PFR28_02948	0.44	-0.2
3,457,262	+		PFR28_02948	0.44	+1.4
3,457,263	-		PFR28_02948	0.44	+0.5
3,457,263	-		PFR28_02948	0.44	+0.9
3,457,263	-		PFR28_02948	0.44	+1.7
3,457,263	-		PFR28_02948	0.44	-0.7
3,457,263	-		PFR28_02948	0.44	-1.2
3,457,263	-		PFR28_02948	0.44	-0.3
3,457,263	-		PFR28_02948	0.44	+0.3
3,457,263	-		PFR28_02948	0.44	-0.9
3,457,263	-		PFR28_02948	0.44	-1.4
3,457,322	+		PFR28_02948	0.54	-0.7
3,457,322	+		PFR28_02948	0.54	+1.0
3,457,322	+		PFR28_02948	0.54	-0.3
3,457,323	-		PFR28_02948	0.54	+1.3
3,457,323	-		PFR28_02948	0.54	+0.8
3,457,323	-		PFR28_02948	0.54	-0.8
3,457,323	-		PFR28_02948	0.54	-0.5
3,457,427	+		PFR28_02948	0.72	-0.3
3,457,427	+		PFR28_02948	0.72	-0.2
3,457,428	-		PFR28_02948	0.73	-0.2
3,457,428	-		PFR28_02948	0.73	-0.3
3,457,452	-		PFR28_02948	0.77	+0.5
3,457,479	-		PFR28_02948	0.81	+0.0
3,457,479	-		PFR28_02948	0.81	-0.4
3,457,549	+				-0.2
3,457,550	-				+0.9
3,457,550	-				-0.5
3,457,550	-				-1.9
3,457,621	-				+0.2
3,457,623	+				+0.2
3,457,624	-				-0.6
3,457,624	-				+0.0
3,457,624	-				+0.5
3,457,689	+				-0.0
3,457,689	+				+1.0
3,457,689	+				-3.3
3,457,689	+				+0.9
3,457,689	+				+0.3
3,457,689	+				+0.1
3,457,689	+				-1.4
3,457,690	-				+0.4
3,457,690	-				+0.3
3,457,690	-				+0.2
3,457,690	-				-0.3
3,457,690	-				+0.4
3,457,690	-				-0.2
3,457,690	-				+1.8
3,457,690	-				+0.2
3,457,690	-				-2.2
3,457,690	-				-1.5
3,457,690	-				+0.0
3,457,690	-				-2.9
3,457,690	-				-0.2
3,457,846	+				+0.5
3,457,846	+				+0.2
3,457,846	+				-1.3
3,457,847	-				-1.9
3,457,854	+				+0.1
3,457,854	+				+0.6
3,457,854	+				-0.3
3,457,854	+				-1.5
3,457,854	+				+1.3
3,457,855	-				+1.5
3,457,855	-				-1.2
3,457,855	-				+1.3
3,457,878	+				-1.2
3,457,878	+				+1.5
3,457,878	+				-0.3
3,457,878	+				+0.3
3,457,879	-				+0.8
3,457,879	-				-0.1
3,457,879	-				-0.4
3,457,879	-				+1.1
3,457,879	-				-1.3
3,457,974	-				-0.7
3,458,008	-				-1.0
3,458,039	+		PFR28_02949	0.19	-0.7
3,458,040	-		PFR28_02949	0.20	+0.8
3,458,071	+		PFR28_02949	0.54	-1.7
3,458,071	+		PFR28_02949	0.54	-3.0
3,458,072	-		PFR28_02949	0.55	+0.1
3,458,125	+				+1.3
3,458,125	+				+0.6
3,458,243	+		PFR28_02950	0.11	+0.9
3,458,447	+		PFR28_02950	0.34	-0.5
3,458,447	+		PFR28_02950	0.34	+0.1
3,458,447	+		PFR28_02950	0.34	+0.7
3,458,447	+		PFR28_02950	0.34	+0.0
3,458,447	+		PFR28_02950	0.34	+0.8
3,458,447	+		PFR28_02950	0.34	-0.6
3,458,447	+		PFR28_02950	0.34	-1.6
3,458,448	-		PFR28_02950	0.35	-1.0
3,458,448	-		PFR28_02950	0.35	-0.6
3,458,448	-		PFR28_02950	0.35	+0.3
3,458,448	-		PFR28_02950	0.35	+2.3
3,458,448	-		PFR28_02950	0.35	+1.7
3,458,457	-		PFR28_02950	0.36	-0.6
3,458,457	-		PFR28_02950	0.36	+0.4
3,458,483	+		PFR28_02950	0.39	+0.9
3,458,484	-		PFR28_02950	0.39	+1.7
3,458,484	-		PFR28_02950	0.39	-0.4
3,458,484	-		PFR28_02950	0.39	+0.7
3,458,534	+		PFR28_02950	0.44	+1.3
3,458,534	+		PFR28_02950	0.44	+0.6
3,458,534	+		PFR28_02950	0.44	-0.1
3,458,534	+		PFR28_02950	0.44	-1.7
3,458,534	+		PFR28_02950	0.44	+0.0
3,458,534	+		PFR28_02950	0.44	-0.2
3,458,534	+		PFR28_02950	0.44	-0.2
3,458,534	+		PFR28_02950	0.44	-0.8
3,458,534	+		PFR28_02950	0.44	-0.7
3,458,535	-		PFR28_02950	0.44	-0.3
3,458,535	-		PFR28_02950	0.44	-0.1
3,458,535	-		PFR28_02950	0.44	-2.1
3,458,535	-		PFR28_02950	0.44	-0.6
3,458,535	-		PFR28_02950	0.44	-0.4
3,458,535	-		PFR28_02950	0.44	-0.9
3,458,535	-		PFR28_02950	0.44	-0.1
3,458,535	-		PFR28_02950	0.44	-0.0
3,458,535	-		PFR28_02950	0.44	+0.2
3,458,543	+		PFR28_02950	0.45	-0.1
3,458,543	+		PFR28_02950	0.45	-0.2
3,458,543	+		PFR28_02950	0.45	+0.0
3,458,543	+		PFR28_02950	0.45	-0.4
3,458,543	+		PFR28_02950	0.45	-0.3
3,458,543	+		PFR28_02950	0.45	+0.3
3,458,544	-		PFR28_02950	0.45	+0.7
3,458,544	-		PFR28_02950	0.45	+1.0
3,458,544	-		PFR28_02950	0.45	-0.5
3,458,544	-		PFR28_02950	0.45	+0.2
3,458,544	-		PFR28_02950	0.45	+0.9
3,458,645	+		PFR28_02950	0.57	-0.0
3,458,646	-		PFR28_02950	0.57	-0.8
3,458,717	+		PFR28_02950	0.65	-0.1
3,458,717	+		PFR28_02950	0.65	+1.0
3,458,717	+		PFR28_02950	0.65	-0.7
3,458,717	+		PFR28_02950	0.65	+0.2
3,458,718	-		PFR28_02950	0.65	+0.4
3,458,718	-		PFR28_02950	0.65	-3.1
3,458,718	-		PFR28_02950	0.65	+0.0
3,458,718	-		PFR28_02950	0.65	+0.4
3,458,718	-		PFR28_02950	0.65	-1.0
3,458,718	-		PFR28_02950	0.65	+0.8
3,458,744	+		PFR28_02950	0.68	-0.7
3,458,744	+		PFR28_02950	0.68	-0.2
3,458,745	-		PFR28_02950	0.68	+0.4
3,458,745	-		PFR28_02950	0.68	+0.3
3,458,745	-		PFR28_02950	0.68	-1.0
3,458,745	-		PFR28_02950	0.68	+0.3
3,458,786	+		PFR28_02950	0.73	-0.5
3,459,039	+				-1.3
3,459,070	+				-0.2
3,459,070	+				+0.1
3,459,071	-				+1.0
3,459,072	+				+1.7
3,459,114	-				-0.1
3,459,331	-		PFR28_02951	0.25	-1.7
3,459,432	+		PFR28_02951	0.38	-0.6
3,459,432	+		PFR28_02951	0.38	-1.1
3,459,432	+		PFR28_02951	0.38	+0.1
3,459,432	+		PFR28_02951	0.38	+0.2
3,459,432	+		PFR28_02951	0.38	+0.4
3,459,432	+		PFR28_02951	0.38	-0.8
3,459,433	-		PFR28_02951	0.38	-2.8
3,459,433	-		PFR28_02951	0.38	+0.4
3,459,433	-		PFR28_02951	0.38	-0.1
3,459,433	-		PFR28_02951	0.38	-0.2
3,459,433	-		PFR28_02951	0.38	+0.4
3,459,433	-		PFR28_02951	0.38	+0.3
3,459,752	+		PFR28_02951	0.78	+0.4
3,459,752	+		PFR28_02951	0.78	-0.1
3,459,787	-		PFR28_02951	0.82	+0.1
3,459,960	+				+0.8
3,459,960	+				-0.3
3,459,960	+				+0.2
3,459,960	+				-0.3
3,459,960	+				-2.0
3,459,960	+				-0.1
3,459,960	+				+0.8
3,459,961	-				-0.6
3,459,961	-				-0.8
3,459,971	-				+0.5
3,459,971	-				-0.7
3,459,981	+				+1.7