Strain Fitness in Pseudomonas sp. RS175 around PFR28_01749

Experiment: pyruvate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFR28_01748 and PFR28_01749 overlap by 8 nucleotidesPFR28_01749 and PFR28_01750 overlap by 4 nucleotides PFR28_01748: PFR28_01748 - hypothetical protein, at 1,950,953 to 1,952,134 _01748 PFR28_01749: PFR28_01749 - hypothetical protein, at 1,952,127 to 1,952,687 _01749 PFR28_01750: PFR28_01750 - Secretin XcpQ, at 1,952,684 to 1,955,044 _01750 Position (kb) 1952 1953Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1951.368 kb on - strand, within PFR28_01748at 1951.452 kb on + strand, within PFR28_01748at 1951.452 kb on + strand, within PFR28_01748at 1951.953 kb on + strand, within PFR28_01748at 1951.953 kb on + strand, within PFR28_01748at 1951.954 kb on - strand, within PFR28_01748at 1951.954 kb on - strand, within PFR28_01748at 1952.425 kb on + strand, within PFR28_01749at 1952.426 kb on - strand, within PFR28_01749at 1952.452 kb on - strand, within PFR28_01749at 1953.122 kb on + strand, within PFR28_01750at 1953.122 kb on + strand, within PFR28_01750at 1953.123 kb on - strand, within PFR28_01750at 1953.233 kb on + strand, within PFR28_01750at 1953.233 kb on + strand, within PFR28_01750at 1953.233 kb on + strand, within PFR28_01750at 1953.234 kb on - strand, within PFR28_01750at 1953.234 kb on - strand, within PFR28_01750at 1953.234 kb on - strand, within PFR28_01750at 1953.234 kb on - strand, within PFR28_01750at 1953.290 kb on + strand, within PFR28_01750at 1953.393 kb on - strand, within PFR28_01750at 1953.393 kb on - strand, within PFR28_01750at 1953.641 kb on + strand, within PFR28_01750at 1953.642 kb on - strand, within PFR28_01750at 1953.642 kb on - strand, within PFR28_01750at 1953.642 kb on - strand, within PFR28_01750at 1953.642 kb on - strand, within PFR28_01750at 1953.642 kb on - strand, within PFR28_01750at 1953.642 kb on - strand, within PFR28_01750at 1953.642 kb on - strand, within PFR28_01750

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
remove
1,951,368 - PFR28_01748 0.35 -0.2
1,951,452 + PFR28_01748 0.42 -2.6
1,951,452 + PFR28_01748 0.42 +3.5
1,951,953 + PFR28_01748 0.85 -1.4
1,951,953 + PFR28_01748 0.85 +0.9
1,951,954 - PFR28_01748 0.85 -2.2
1,951,954 - PFR28_01748 0.85 +0.1
1,952,425 + PFR28_01749 0.53 -1.7
1,952,426 - PFR28_01749 0.53 -0.9
1,952,452 - PFR28_01749 0.58 -0.6
1,953,122 + PFR28_01750 0.19 +2.1
1,953,122 + PFR28_01750 0.19 -0.6
1,953,123 - PFR28_01750 0.19 +1.5
1,953,233 + PFR28_01750 0.23 -1.5
1,953,233 + PFR28_01750 0.23 +1.0
1,953,233 + PFR28_01750 0.23 +1.0
1,953,234 - PFR28_01750 0.23 -0.3
1,953,234 - PFR28_01750 0.23 +0.8
1,953,234 - PFR28_01750 0.23 -1.9
1,953,234 - PFR28_01750 0.23 +0.7
1,953,290 + PFR28_01750 0.26 -0.6
1,953,393 - PFR28_01750 0.30 +0.7
1,953,393 - PFR28_01750 0.30 -0.2
1,953,641 + PFR28_01750 0.41 -0.1
1,953,642 - PFR28_01750 0.41 +0.9
1,953,642 - PFR28_01750 0.41 -2.9
1,953,642 - PFR28_01750 0.41 -1.4
1,953,642 - PFR28_01750 0.41 -0.3
1,953,642 - PFR28_01750 0.41 +0.3
1,953,642 - PFR28_01750 0.41 +1.8
1,953,642 - PFR28_01750 0.41 -0.1

Or see this region's nucleotide sequence