Strain Fitness in Pseudomonas sp. RS175 around PFR28_01744

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01742 and PFR28_01743 overlap by 4 nucleotidesPFR28_01743 and PFR28_01744 are separated by 119 nucleotidesPFR28_01744 and PFR28_01745 are separated by 26 nucleotidesPFR28_01745 and PFR28_01746 are separated by 150 nucleotides PFR28_01742: PFR28_01742 - hypothetical protein, at 1,947,349 to 1,947,960 _01742 PFR28_01743: PFR28_01743 - hypothetical protein, at 1,947,957 to 1,948,409 _01743 PFR28_01744: PFR28_01744 - hypothetical protein, at 1,948,529 to 1,948,960 _01744 PFR28_01745: PFR28_01745 - hypothetical protein, at 1,948,987 to 1,949,361 _01745 PFR28_01746: PFR28_01746 - Type II secretion system protein G, at 1,949,512 to 1,949,961 _01746 Position (kb) 1948 1949Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1947.969 kb on + strandat 1948.217 kb on + strand, within PFR28_01743at 1948.455 kb on + strandat 1948.456 kb on - strandat 1948.456 kb on - strandat 1948.468 kb on + strandat 1948.490 kb on + strandat 1948.490 kb on + strandat 1948.491 kb on - strandat 1948.491 kb on - strandat 1948.511 kb on + strandat 1948.512 kb on - strandat 1948.539 kb on + strandat 1948.539 kb on + strandat 1948.540 kb on - strandat 1948.540 kb on - strandat 1948.576 kb on - strand, within PFR28_01744at 1948.842 kb on + strand, within PFR28_01744at 1948.842 kb on + strand, within PFR28_01744at 1948.842 kb on + strand, within PFR28_01744at 1948.843 kb on - strand, within PFR28_01744at 1948.843 kb on - strand, within PFR28_01744at 1948.950 kb on + strandat 1948.950 kb on + strandat 1948.950 kb on + strandat 1948.951 kb on - strandat 1948.951 kb on - strandat 1948.951 kb on - strandat 1948.951 kb on - strandat 1949.365 kb on + strandat 1949.460 kb on + strandat 1949.574 kb on + strand, within PFR28_01746at 1949.575 kb on - strand, within PFR28_01746at 1949.576 kb on + strand, within PFR28_01746at 1949.576 kb on + strand, within PFR28_01746at 1949.577 kb on - strand, within PFR28_01746at 1949.577 kb on - strand, within PFR28_01746at 1949.713 kb on + strand, within PFR28_01746at 1949.714 kb on - strand, within PFR28_01746at 1949.810 kb on - strand, within PFR28_01746at 1949.848 kb on + strand, within PFR28_01746at 1949.848 kb on + strand, within PFR28_01746at 1949.848 kb on + strand, within PFR28_01746at 1949.848 kb on + strand, within PFR28_01746at 1949.848 kb on + strand, within PFR28_01746at 1949.848 kb on + strand, within PFR28_01746at 1949.848 kb on + strand, within PFR28_01746at 1949.848 kb on + strand, within PFR28_01746at 1949.848 kb on + strand, within PFR28_01746at 1949.848 kb on + strand, within PFR28_01746at 1949.849 kb on - strand, within PFR28_01746at 1949.849 kb on - strand, within PFR28_01746at 1949.849 kb on - strand, within PFR28_01746at 1949.850 kb on + strand, within PFR28_01746at 1949.850 kb on + strand, within PFR28_01746at 1949.850 kb on + strand, within PFR28_01746at 1949.851 kb on - strand, within PFR28_01746at 1949.854 kb on + strand, within PFR28_01746at 1949.854 kb on + strand, within PFR28_01746at 1949.854 kb on + strand, within PFR28_01746at 1949.855 kb on - strand, within PFR28_01746at 1949.855 kb on - strand, within PFR28_01746at 1949.855 kb on - strand, within PFR28_01746at 1949.855 kb on - strand, within PFR28_01746at 1949.959 kb on + strandat 1949.959 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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1,947,969 + -0.2
1,948,217 + PFR28_01743 0.57 -0.6
1,948,455 + -1.2
1,948,456 - -0.7
1,948,456 - +0.6
1,948,468 + -1.2
1,948,490 + +0.5
1,948,490 + +0.3
1,948,491 - -3.0
1,948,491 - -0.3
1,948,511 + +0.1
1,948,512 - -0.1
1,948,539 + +0.9
1,948,539 + +0.0
1,948,540 - +0.4
1,948,540 - +1.9
1,948,576 - PFR28_01744 0.11 -2.6
1,948,842 + PFR28_01744 0.72 -0.7
1,948,842 + PFR28_01744 0.72 -0.4
1,948,842 + PFR28_01744 0.72 -1.1
1,948,843 - PFR28_01744 0.73 +0.1
1,948,843 - PFR28_01744 0.73 +0.5
1,948,950 + +0.4
1,948,950 + -0.1
1,948,950 + -0.5
1,948,951 - -1.1
1,948,951 - -2.7
1,948,951 - -0.9
1,948,951 - -0.4
1,949,365 + -1.4
1,949,460 + +0.8
1,949,574 + PFR28_01746 0.14 -1.8
1,949,575 - PFR28_01746 0.14 +0.8
1,949,576 + PFR28_01746 0.14 +0.1
1,949,576 + PFR28_01746 0.14 +0.6
1,949,577 - PFR28_01746 0.14 +0.4
1,949,577 - PFR28_01746 0.14 -0.6
1,949,713 + PFR28_01746 0.45 +1.5
1,949,714 - PFR28_01746 0.45 -2.3
1,949,810 - PFR28_01746 0.66 -1.2
1,949,848 + PFR28_01746 0.75 +0.4
1,949,848 + PFR28_01746 0.75 +0.1
1,949,848 + PFR28_01746 0.75 -0.8
1,949,848 + PFR28_01746 0.75 -1.2
1,949,848 + PFR28_01746 0.75 +0.0
1,949,848 + PFR28_01746 0.75 +0.5
1,949,848 + PFR28_01746 0.75 +0.5
1,949,848 + PFR28_01746 0.75 +1.2
1,949,848 + PFR28_01746 0.75 -0.0
1,949,848 + PFR28_01746 0.75 -0.2
1,949,849 - PFR28_01746 0.75 -0.5
1,949,849 - PFR28_01746 0.75 +0.9
1,949,849 - PFR28_01746 0.75 -1.7
1,949,850 + PFR28_01746 0.75 -0.5
1,949,850 + PFR28_01746 0.75 +3.3
1,949,850 + PFR28_01746 0.75 -1.3
1,949,851 - PFR28_01746 0.75 -0.2
1,949,854 + PFR28_01746 0.76 -1.5
1,949,854 + PFR28_01746 0.76 +0.6
1,949,854 + PFR28_01746 0.76 +1.0
1,949,855 - PFR28_01746 0.76 -1.2
1,949,855 - PFR28_01746 0.76 -1.0
1,949,855 - PFR28_01746 0.76 +1.1
1,949,855 - PFR28_01746 0.76 -1.1
1,949,959 + -0.9
1,949,959 + +0.0

Or see this region's nucleotide sequence