Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_01372 and PFR28_01373 are separated by 78 nucleotides PFR28_01373 and PFR28_01374 overlap by 4 nucleotides PFR28_01374 and PFR28_01375 are separated by 11 nucleotides
PFR28_01372: PFR28_01372 - Precorrin-4 C(11)-methyltransferase, at 1,494,761 to 1,495,507
_01372
PFR28_01373: PFR28_01373 - Cobalt-precorrin-5A hydrolase, at 1,495,586 to 1,495,990
_01373
PFR28_01374: PFR28_01374 - hypothetical protein, at 1,495,987 to 1,496,682
_01374
PFR28_01375: PFR28_01375 - hypothetical protein, at 1,496,694 to 1,496,882
_01375
Position (kb) 1495
1496
1497 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1495.090 kb on + strand, within PFR28_01372 at 1495.091 kb on - strand, within PFR28_01372 at 1495.414 kb on - strand, within PFR28_01372 at 1495.414 kb on - strand, within PFR28_01372 at 1495.414 kb on - strand, within PFR28_01372 at 1495.414 kb on - strand, within PFR28_01372 at 1495.497 kb on + strand at 1495.497 kb on + strand at 1495.497 kb on + strand at 1495.497 kb on + strand at 1495.497 kb on + strand at 1495.497 kb on + strand at 1495.588 kb on - strand at 1496.405 kb on + strand, within PFR28_01374 at 1496.405 kb on + strand, within PFR28_01374 at 1496.406 kb on - strand, within PFR28_01374 at 1496.406 kb on - strand, within PFR28_01374 at 1496.406 kb on - strand, within PFR28_01374 at 1496.452 kb on - strand, within PFR28_01374 at 1496.776 kb on + strand, within PFR28_01375 at 1496.777 kb on - strand, within PFR28_01375 at 1496.777 kb on - strand, within PFR28_01375 at 1496.777 kb on - strand, within PFR28_01375 at 1497.100 kb on - strand at 1497.141 kb on - strand at 1497.141 kb on - strand at 1497.190 kb on + strand at 1497.194 kb on + strand at 1497.194 kb on + strand at 1497.194 kb on + strand at 1497.194 kb on + strand at 1497.195 kb on - strand at 1497.195 kb on - strand at 1497.302 kb on - strand at 1497.346 kb on + strand at 1497.346 kb on + strand at 1497.351 kb on + strand at 1497.351 kb on + strand at 1497.351 kb on + strand at 1497.351 kb on + strand at 1497.351 kb on + strand at 1497.351 kb on + strand at 1497.351 kb on + strand at 1497.351 kb on + strand at 1497.351 kb on + strand at 1497.351 kb on + strand at 1497.351 kb on + strand at 1497.351 kb on + strand at 1497.351 kb on + strand at 1497.351 kb on + strand at 1497.351 kb on + strand at 1497.352 kb on - strand at 1497.352 kb on - strand at 1497.352 kb on - strand at 1497.352 kb on - strand at 1497.352 kb on - strand at 1497.352 kb on - strand at 1497.352 kb on - strand at 1497.352 kb on - strand at 1497.352 kb on - strand at 1497.426 kb on + strand at 1497.426 kb on + strand at 1497.426 kb on + strand at 1497.427 kb on - strand at 1497.600 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 1,495,090 + PFR28_01372 0.44 -3.5 1,495,091 - PFR28_01372 0.44 -0.4 1,495,414 - PFR28_01372 0.87 +0.3 1,495,414 - PFR28_01372 0.87 -2.7 1,495,414 - PFR28_01372 0.87 -1.7 1,495,414 - PFR28_01372 0.87 -1.3 1,495,497 + +1.6 1,495,497 + -0.6 1,495,497 + -0.9 1,495,497 + -2.4 1,495,497 + +1.6 1,495,497 + -1.6 1,495,588 - -1.7 1,496,405 + PFR28_01374 0.60 -1.3 1,496,405 + PFR28_01374 0.60 -2.3 1,496,406 - PFR28_01374 0.60 -0.6 1,496,406 - PFR28_01374 0.60 -1.1 1,496,406 - PFR28_01374 0.60 -0.2 1,496,452 - PFR28_01374 0.67 -0.7 1,496,776 + PFR28_01375 0.43 -2.8 1,496,777 - PFR28_01375 0.44 -2.9 1,496,777 - PFR28_01375 0.44 +0.6 1,496,777 - PFR28_01375 0.44 +1.3 1,497,100 - -0.4 1,497,141 - -0.5 1,497,141 - -2.0 1,497,190 + -2.8 1,497,194 + -1.8 1,497,194 + -0.6 1,497,194 + -0.2 1,497,194 + +0.9 1,497,195 - +2.6 1,497,195 - +0.0 1,497,302 - -0.9 1,497,346 + -0.4 1,497,346 + -0.4 1,497,351 + -1.7 1,497,351 + -0.3 1,497,351 + +0.2 1,497,351 + -0.9 1,497,351 + +0.4 1,497,351 + -1.8 1,497,351 + -0.1 1,497,351 + +0.3 1,497,351 + +0.0 1,497,351 + +0.9 1,497,351 + -1.1 1,497,351 + -0.1 1,497,351 + -1.4 1,497,351 + +0.7 1,497,351 + -0.8 1,497,352 - +1.8 1,497,352 - -0.0 1,497,352 - +0.8 1,497,352 - +0.9 1,497,352 - -0.3 1,497,352 - -0.1 1,497,352 - -0.9 1,497,352 - -0.7 1,497,352 - +0.7 1,497,426 + +0.7 1,497,426 + -0.4 1,497,426 + -0.3 1,497,427 - -0.2 1,497,600 - -0.7
Or see this region's nucleotide sequence