Strain Fitness in Pseudomonas sp. RS175 around PFR28_01175

Experiment: pyruvate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFR28_01173 and PFR28_01174 overlap by 4 nucleotidesPFR28_01174 and PFR28_01175 are separated by 135 nucleotidesPFR28_01175 and PFR28_01176 overlap by 6 nucleotidesPFR28_01176 and PFR28_01177 overlap by 4 nucleotides PFR28_01173: PFR28_01173 - hypothetical protein, at 1,288,048 to 1,288,392 _01173 PFR28_01174: PFR28_01174 - hypothetical protein, at 1,288,389 to 1,288,961 _01174 PFR28_01175: PFR28_01175 - hypothetical protein, at 1,289,097 to 1,289,888 _01175 PFR28_01176: PFR28_01176 - hypothetical protein, at 1,289,883 to 1,290,347 _01176 PFR28_01177: PFR28_01177 - hypothetical protein, at 1,290,344 to 1,290,820 _01177 Position (kb) 1289 1290Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1288.224 kb on - strand, within PFR28_01173at 1288.224 kb on - strand, within PFR28_01173at 1288.526 kb on - strand, within PFR28_01174at 1288.636 kb on + strand, within PFR28_01174at 1288.636 kb on + strand, within PFR28_01174at 1288.637 kb on - strand, within PFR28_01174at 1288.637 kb on - strand, within PFR28_01174at 1288.951 kb on - strandat 1288.951 kb on - strandat 1288.951 kb on - strandat 1289.011 kb on + strandat 1289.012 kb on - strandat 1289.025 kb on - strandat 1289.025 kb on - strandat 1289.103 kb on + strandat 1289.105 kb on + strandat 1289.117 kb on + strandat 1289.430 kb on + strand, within PFR28_01175at 1289.483 kb on + strand, within PFR28_01175at 1289.483 kb on + strand, within PFR28_01175at 1289.483 kb on + strand, within PFR28_01175at 1289.484 kb on - strand, within PFR28_01175at 1289.495 kb on + strand, within PFR28_01175at 1289.495 kb on + strand, within PFR28_01175at 1289.496 kb on - strand, within PFR28_01175at 1289.499 kb on - strand, within PFR28_01175at 1289.508 kb on + strand, within PFR28_01175at 1289.509 kb on - strand, within PFR28_01175at 1289.509 kb on - strand, within PFR28_01175at 1289.530 kb on + strand, within PFR28_01175at 1289.631 kb on - strand, within PFR28_01175at 1289.789 kb on + strand, within PFR28_01175at 1289.807 kb on + strand, within PFR28_01175at 1289.807 kb on + strand, within PFR28_01175at 1289.827 kb on - strandat 1289.956 kb on - strand, within PFR28_01176at 1290.068 kb on + strand, within PFR28_01176at 1290.072 kb on - strand, within PFR28_01176at 1290.187 kb on + strand, within PFR28_01176at 1290.188 kb on - strand, within PFR28_01176at 1290.389 kb on + strandat 1290.451 kb on + strand, within PFR28_01177at 1290.671 kb on + strand, within PFR28_01177at 1290.671 kb on + strand, within PFR28_01177at 1290.671 kb on + strand, within PFR28_01177at 1290.672 kb on - strand, within PFR28_01177at 1290.672 kb on - strand, within PFR28_01177at 1290.853 kb on + strandat 1290.853 kb on + strandat 1290.853 kb on + strandat 1290.854 kb on - strandat 1290.854 kb on - strandat 1290.854 kb on - strandat 1290.854 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
remove
1,288,224 - PFR28_01173 0.51 -0.7
1,288,224 - PFR28_01173 0.51 -0.2
1,288,526 - PFR28_01174 0.24 +0.4
1,288,636 + PFR28_01174 0.43 +0.6
1,288,636 + PFR28_01174 0.43 -1.3
1,288,637 - PFR28_01174 0.43 +1.7
1,288,637 - PFR28_01174 0.43 +0.1
1,288,951 - -0.4
1,288,951 - +0.6
1,288,951 - -0.4
1,289,011 + -2.0
1,289,012 - -1.1
1,289,025 - -0.4
1,289,025 - +0.4
1,289,103 + +0.4
1,289,105 + +1.7
1,289,117 + +3.0
1,289,430 + PFR28_01175 0.42 +1.3
1,289,483 + PFR28_01175 0.49 -2.1
1,289,483 + PFR28_01175 0.49 +0.5
1,289,483 + PFR28_01175 0.49 +2.8
1,289,484 - PFR28_01175 0.49 +0.1
1,289,495 + PFR28_01175 0.50 +1.8
1,289,495 + PFR28_01175 0.50 +3.6
1,289,496 - PFR28_01175 0.50 +1.8
1,289,499 - PFR28_01175 0.51 +0.3
1,289,508 + PFR28_01175 0.52 +0.6
1,289,509 - PFR28_01175 0.52 +2.1
1,289,509 - PFR28_01175 0.52 +1.9
1,289,530 + PFR28_01175 0.55 +1.8
1,289,631 - PFR28_01175 0.67 -0.4
1,289,789 + PFR28_01175 0.87 -0.5
1,289,807 + PFR28_01175 0.90 +1.5
1,289,807 + PFR28_01175 0.90 +1.1
1,289,827 - +1.0
1,289,956 - PFR28_01176 0.16 +1.6
1,290,068 + PFR28_01176 0.40 +1.2
1,290,072 - PFR28_01176 0.41 +0.1
1,290,187 + PFR28_01176 0.65 -1.6
1,290,188 - PFR28_01176 0.66 +2.2
1,290,389 + +1.2
1,290,451 + PFR28_01177 0.22 +0.4
1,290,671 + PFR28_01177 0.69 +0.5
1,290,671 + PFR28_01177 0.69 +0.6
1,290,671 + PFR28_01177 0.69 +0.2
1,290,672 - PFR28_01177 0.69 +1.3
1,290,672 - PFR28_01177 0.69 -1.1
1,290,853 + +0.3
1,290,853 + -0.1
1,290,853 + +0.4
1,290,854 - +1.0
1,290,854 - -0.1
1,290,854 - +0.0
1,290,854 - +4.6

Or see this region's nucleotide sequence