Strain Fitness in Pseudomonas sp. RS175 around PFR28_00851

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00850 and PFR28_00851 are separated by 114 nucleotidesPFR28_00851 and PFR28_00852 overlap by 4 nucleotidesPFR28_00852 and PFR28_00853 are separated by 166 nucleotides PFR28_00850: PFR28_00850 - Signal recognition particle 54 kDa protein, at 922,714 to 924,063 _00850 PFR28_00851: PFR28_00851 - Flagellum site-determining protein YlxH, at 924,178 to 925,008 _00851 PFR28_00852: PFR28_00852 - RNA polymerase sigma factor FliA, at 925,005 to 925,748 _00852 PFR28_00853: PFR28_00853 - Chemotaxis protein CheY, at 925,915 to 926,286 _00853 Position (kb) 924 925 926Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 923.470 kb on + strand, within PFR28_00850at 923.471 kb on - strand, within PFR28_00850at 923.471 kb on - strand, within PFR28_00850at 923.471 kb on - strand, within PFR28_00850at 923.482 kb on + strand, within PFR28_00850at 923.482 kb on + strand, within PFR28_00850at 923.482 kb on + strand, within PFR28_00850at 923.482 kb on + strand, within PFR28_00850at 923.482 kb on + strand, within PFR28_00850at 923.482 kb on + strand, within PFR28_00850at 923.482 kb on + strand, within PFR28_00850at 923.483 kb on - strand, within PFR28_00850at 923.483 kb on - strand, within PFR28_00850at 923.483 kb on - strand, within PFR28_00850at 923.483 kb on - strand, within PFR28_00850at 923.483 kb on - strand, within PFR28_00850at 923.721 kb on + strand, within PFR28_00850at 923.721 kb on + strand, within PFR28_00850at 923.723 kb on + strand, within PFR28_00850at 923.723 kb on + strand, within PFR28_00850at 923.723 kb on + strand, within PFR28_00850at 923.723 kb on + strand, within PFR28_00850at 923.774 kb on + strand, within PFR28_00850at 923.775 kb on - strand, within PFR28_00850at 923.794 kb on + strand, within PFR28_00850at 923.794 kb on + strand, within PFR28_00850at 923.794 kb on + strand, within PFR28_00850at 923.794 kb on + strand, within PFR28_00850at 923.794 kb on + strand, within PFR28_00850at 923.794 kb on + strand, within PFR28_00850at 923.795 kb on - strand, within PFR28_00850at 923.899 kb on + strand, within PFR28_00850at 924.030 kb on + strandat 924.030 kb on + strandat 924.030 kb on + strandat 924.030 kb on + strandat 924.030 kb on + strandat 924.034 kb on + strandat 924.034 kb on + strandat 924.034 kb on + strandat 924.034 kb on + strandat 924.034 kb on + strandat 924.034 kb on + strandat 924.034 kb on + strandat 924.034 kb on + strandat 924.034 kb on + strandat 924.034 kb on + strandat 924.034 kb on + strandat 924.034 kb on + strandat 924.034 kb on + strandat 924.034 kb on + strandat 924.035 kb on - strandat 924.035 kb on - strandat 924.035 kb on - strandat 924.035 kb on - strandat 924.035 kb on - strandat 924.046 kb on - strandat 924.066 kb on + strandat 924.066 kb on + strandat 924.066 kb on + strandat 924.066 kb on + strandat 924.067 kb on - strandat 924.067 kb on - strandat 924.089 kb on + strandat 924.089 kb on + strandat 924.089 kb on + strandat 924.089 kb on + strandat 924.089 kb on + strandat 924.089 kb on + strandat 924.090 kb on - strandat 924.090 kb on - strandat 924.090 kb on - strandat 924.090 kb on - strandat 924.090 kb on - strandat 924.090 kb on - strandat 924.119 kb on + strandat 924.136 kb on + strandat 924.136 kb on + strandat 924.152 kb on + strandat 924.156 kb on + strandat 924.156 kb on + strandat 924.156 kb on + strandat 924.157 kb on - strandat 924.157 kb on - strandat 924.157 kb on - strandat 924.167 kb on - strandat 924.650 kb on - strand, within PFR28_00851at 924.797 kb on - strand, within PFR28_00851at 924.797 kb on - strand, within PFR28_00851at 924.797 kb on - strand, within PFR28_00851at 924.860 kb on - strand, within PFR28_00851at 924.860 kb on - strand, within PFR28_00851at 925.032 kb on + strandat 925.032 kb on + strandat 925.032 kb on + strandat 925.033 kb on - strandat 925.033 kb on - strandat 925.033 kb on - strandat 925.060 kb on - strandat 925.060 kb on - strandat 925.104 kb on + strand, within PFR28_00852at 925.105 kb on - strand, within PFR28_00852at 925.105 kb on - strand, within PFR28_00852at 925.105 kb on - strand, within PFR28_00852at 925.105 kb on - strand, within PFR28_00852at 925.194 kb on + strand, within PFR28_00852at 925.194 kb on + strand, within PFR28_00852at 925.194 kb on + strand, within PFR28_00852at 925.195 kb on - strand, within PFR28_00852at 925.195 kb on - strand, within PFR28_00852at 925.195 kb on - strand, within PFR28_00852at 925.195 kb on - strand, within PFR28_00852at 925.227 kb on + strand, within PFR28_00852at 925.227 kb on + strand, within PFR28_00852at 925.227 kb on + strand, within PFR28_00852at 925.227 kb on + strand, within PFR28_00852at 925.228 kb on - strand, within PFR28_00852at 925.228 kb on - strand, within PFR28_00852at 925.228 kb on - strand, within PFR28_00852at 925.298 kb on - strand, within PFR28_00852at 925.304 kb on + strand, within PFR28_00852at 925.304 kb on + strand, within PFR28_00852at 925.304 kb on + strand, within PFR28_00852at 925.304 kb on + strand, within PFR28_00852at 925.305 kb on - strand, within PFR28_00852at 925.305 kb on - strand, within PFR28_00852at 925.305 kb on - strand, within PFR28_00852at 925.305 kb on - strand, within PFR28_00852at 925.305 kb on - strand, within PFR28_00852at 925.307 kb on + strand, within PFR28_00852at 925.347 kb on - strand, within PFR28_00852at 925.364 kb on + strand, within PFR28_00852at 925.411 kb on - strand, within PFR28_00852at 925.411 kb on - strand, within PFR28_00852at 925.411 kb on - strand, within PFR28_00852at 925.515 kb on + strand, within PFR28_00852at 925.515 kb on + strand, within PFR28_00852at 925.515 kb on + strand, within PFR28_00852at 925.515 kb on + strand, within PFR28_00852at 925.515 kb on + strand, within PFR28_00852at 925.515 kb on + strand, within PFR28_00852at 925.516 kb on - strand, within PFR28_00852at 925.516 kb on - strand, within PFR28_00852at 925.516 kb on - strand, within PFR28_00852at 925.516 kb on - strand, within PFR28_00852at 925.516 kb on - strand, within PFR28_00852at 925.516 kb on - strand, within PFR28_00852at 925.516 kb on - strand, within PFR28_00852at 925.516 kb on - strand, within PFR28_00852at 925.516 kb on - strand, within PFR28_00852at 925.516 kb on - strand, within PFR28_00852at 925.516 kb on - strand, within PFR28_00852at 925.517 kb on + strand, within PFR28_00852at 925.517 kb on + strand, within PFR28_00852at 925.517 kb on + strand, within PFR28_00852at 925.617 kb on + strand, within PFR28_00852at 925.617 kb on + strand, within PFR28_00852at 925.617 kb on + strand, within PFR28_00852at 925.618 kb on - strand, within PFR28_00852at 925.618 kb on - strand, within PFR28_00852at 925.618 kb on - strand, within PFR28_00852at 925.620 kb on + strand, within PFR28_00852at 925.620 kb on + strand, within PFR28_00852at 925.621 kb on - strand, within PFR28_00852at 925.621 kb on - strand, within PFR28_00852at 925.621 kb on - strand, within PFR28_00852at 925.690 kb on + strandat 925.690 kb on + strandat 925.690 kb on + strandat 925.690 kb on + strandat 925.690 kb on + strandat 925.691 kb on - strandat 925.808 kb on - strandat 925.882 kb on + strandat 925.882 kb on + strandat 925.883 kb on - strandat 925.883 kb on - strandat 925.883 kb on - strandat 925.962 kb on + strand, within PFR28_00853at 925.962 kb on + strand, within PFR28_00853at 925.963 kb on - strand, within PFR28_00853at 925.963 kb on - strand, within PFR28_00853at 925.963 kb on - strand, within PFR28_00853at 925.963 kb on - strand, within PFR28_00853

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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923,470 + PFR28_00850 0.56 -0.9
923,471 - PFR28_00850 0.56 +3.9
923,471 - PFR28_00850 0.56 +1.3
923,471 - PFR28_00850 0.56 +0.3
923,482 + PFR28_00850 0.57 -1.2
923,482 + PFR28_00850 0.57 -1.8
923,482 + PFR28_00850 0.57 -0.4
923,482 + PFR28_00850 0.57 -2.3
923,482 + PFR28_00850 0.57 -0.8
923,482 + PFR28_00850 0.57 -0.3
923,482 + PFR28_00850 0.57 +0.4
923,483 - PFR28_00850 0.57 +1.3
923,483 - PFR28_00850 0.57 -1.3
923,483 - PFR28_00850 0.57 +2.3
923,483 - PFR28_00850 0.57 -1.3
923,483 - PFR28_00850 0.57 +0.3
923,721 + PFR28_00850 0.75 +1.5
923,721 + PFR28_00850 0.75 -0.7
923,723 + PFR28_00850 0.75 -0.4
923,723 + PFR28_00850 0.75 -0.7
923,723 + PFR28_00850 0.75 -0.6
923,723 + PFR28_00850 0.75 -1.4
923,774 + PFR28_00850 0.79 +0.1
923,775 - PFR28_00850 0.79 -0.3
923,794 + PFR28_00850 0.80 -0.6
923,794 + PFR28_00850 0.80 +0.0
923,794 + PFR28_00850 0.80 -0.2
923,794 + PFR28_00850 0.80 -1.5
923,794 + PFR28_00850 0.80 -1.2
923,794 + PFR28_00850 0.80 -0.3
923,795 - PFR28_00850 0.80 +1.3
923,899 + PFR28_00850 0.88 -2.5
924,030 + -2.4
924,030 + -0.9
924,030 + -0.6
924,030 + +0.1
924,030 + -0.1
924,034 + -0.1
924,034 + -0.7
924,034 + -0.7
924,034 + -1.7
924,034 + -0.7
924,034 + -0.9
924,034 + +0.1
924,034 + +0.5
924,034 + +1.0
924,034 + -0.0
924,034 + -0.3
924,034 + -1.5
924,034 + -0.4
924,034 + -0.3
924,035 - +1.3
924,035 - +1.3
924,035 - +0.3
924,035 - +1.3
924,035 - +1.3
924,046 - +1.3
924,066 + -1.1
924,066 + -1.4
924,066 + -1.7
924,066 + -0.1
924,067 - +0.3
924,067 - +1.3
924,089 + +0.6
924,089 + -0.1
924,089 + -1.3
924,089 + +1.7
924,089 + -0.7
924,089 + +0.3
924,090 - -0.3
924,090 - +0.3
924,090 - +0.3
924,090 - +2.3
924,090 - -0.7
924,090 - +2.3
924,119 + +0.0
924,136 + +0.6
924,136 + -1.4
924,152 + -0.7
924,156 + +0.6
924,156 + -0.8
924,156 + -1.0
924,157 - +1.3
924,157 - +2.3
924,157 - -1.0
924,167 - -0.7
924,650 - PFR28_00851 0.57 -1.5
924,797 - PFR28_00851 0.74 -1.3
924,797 - PFR28_00851 0.74 +0.9
924,797 - PFR28_00851 0.74 +1.3
924,860 - PFR28_00851 0.82 +1.3
924,860 - PFR28_00851 0.82 -1.3
925,032 + -1.0
925,032 + -1.0
925,032 + -0.4
925,033 - -0.2
925,033 - -0.3
925,033 - +1.9
925,060 - -1.8
925,060 - -0.2
925,104 + PFR28_00852 0.13 -0.2
925,105 - PFR28_00852 0.13 -0.1
925,105 - PFR28_00852 0.13 +0.6
925,105 - PFR28_00852 0.13 -3.8
925,105 - PFR28_00852 0.13 -0.9
925,194 + PFR28_00852 0.25 +0.5
925,194 + PFR28_00852 0.25 -0.4
925,194 + PFR28_00852 0.25 -1.0
925,195 - PFR28_00852 0.26 -0.5
925,195 - PFR28_00852 0.26 -1.1
925,195 - PFR28_00852 0.26 +1.3
925,195 - PFR28_00852 0.26 -0.7
925,227 + PFR28_00852 0.30 -0.2
925,227 + PFR28_00852 0.30 -0.8
925,227 + PFR28_00852 0.30 -3.1
925,227 + PFR28_00852 0.30 -1.3
925,228 - PFR28_00852 0.30 +0.5
925,228 - PFR28_00852 0.30 -0.3
925,228 - PFR28_00852 0.30 -0.2
925,298 - PFR28_00852 0.39 +0.1
925,304 + PFR28_00852 0.40 -1.7
925,304 + PFR28_00852 0.40 -3.9
925,304 + PFR28_00852 0.40 -0.8
925,304 + PFR28_00852 0.40 +0.4
925,305 - PFR28_00852 0.40 +0.2
925,305 - PFR28_00852 0.40 -0.7
925,305 - PFR28_00852 0.40 -1.5
925,305 - PFR28_00852 0.40 -1.3
925,305 - PFR28_00852 0.40 -1.1
925,307 + PFR28_00852 0.41 -1.9
925,347 - PFR28_00852 0.46 -0.5
925,364 + PFR28_00852 0.48 +1.1
925,411 - PFR28_00852 0.55 -0.9
925,411 - PFR28_00852 0.55 -2.4
925,411 - PFR28_00852 0.55 -0.0
925,515 + PFR28_00852 0.69 -0.5
925,515 + PFR28_00852 0.69 -1.8
925,515 + PFR28_00852 0.69 -1.0
925,515 + PFR28_00852 0.69 -0.3
925,515 + PFR28_00852 0.69 -0.6
925,515 + PFR28_00852 0.69 -1.0
925,516 - PFR28_00852 0.69 -0.2
925,516 - PFR28_00852 0.69 -0.5
925,516 - PFR28_00852 0.69 -0.0
925,516 - PFR28_00852 0.69 +0.3
925,516 - PFR28_00852 0.69 +1.6
925,516 - PFR28_00852 0.69 -0.1
925,516 - PFR28_00852 0.69 -1.1
925,516 - PFR28_00852 0.69 +0.4
925,516 - PFR28_00852 0.69 +0.2
925,516 - PFR28_00852 0.69 -0.3
925,516 - PFR28_00852 0.69 -1.4
925,517 + PFR28_00852 0.69 -1.6
925,517 + PFR28_00852 0.69 -1.9
925,517 + PFR28_00852 0.69 -1.6
925,617 + PFR28_00852 0.82 +0.7
925,617 + PFR28_00852 0.82 -1.1
925,617 + PFR28_00852 0.82 -0.1
925,618 - PFR28_00852 0.82 -0.5
925,618 - PFR28_00852 0.82 +0.1
925,618 - PFR28_00852 0.82 -0.2
925,620 + PFR28_00852 0.83 -0.3
925,620 + PFR28_00852 0.83 -0.8
925,621 - PFR28_00852 0.83 -0.3
925,621 - PFR28_00852 0.83 -0.8
925,621 - PFR28_00852 0.83 -0.3
925,690 + -0.7
925,690 + -1.5
925,690 + -0.6
925,690 + -0.3
925,690 + -1.1
925,691 - +0.6
925,808 - -0.3
925,882 + -0.5
925,882 + -0.0
925,883 - -0.5
925,883 - -2.1
925,883 - -3.6
925,962 + PFR28_00853 0.13 -1.4
925,962 + PFR28_00853 0.13 -0.5
925,963 - PFR28_00853 0.13 -0.4
925,963 - PFR28_00853 0.13 -1.0
925,963 - PFR28_00853 0.13 -0.2
925,963 - PFR28_00853 0.13 -0.3

Or see this region's nucleotide sequence