Strain Fitness in Pseudomonas sp. RS175 around PFR28_00842

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00840 and PFR28_00841 are separated by 198 nucleotidesPFR28_00841 and PFR28_00842 are separated by 9 nucleotidesPFR28_00842 and PFR28_00843 are separated by 65 nucleotidesPFR28_00843 and PFR28_00844 are separated by 27 nucleotidesPFR28_00844 and PFR28_00845 overlap by 1 nucleotides PFR28_00840: PFR28_00840 - hypothetical protein, at 913,361 to 914,734 _00840 PFR28_00841: PFR28_00841 - hypothetical protein, at 914,933 to 915,436 _00841 PFR28_00842: PFR28_00842 - Flagellar motor switch protein FliM, at 915,446 to 916,414 _00842 PFR28_00843: PFR28_00843 - Flagellar motor switch protein FliN, at 916,480 to 916,938 _00843 PFR28_00844: PFR28_00844 - hypothetical protein, at 916,966 to 917,373 _00844 PFR28_00845: PFR28_00845 - Flagellar biosynthetic protein FliP, at 917,373 to 918,122 _00845 Position (kb) 915 916 917Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 914.707 kb on + strandat 914.723 kb on + strandat 914.723 kb on + strandat 914.723 kb on + strandat 914.724 kb on - strandat 914.724 kb on - strandat 914.726 kb on + strandat 914.726 kb on + strandat 914.726 kb on + strandat 914.726 kb on + strandat 914.727 kb on - strandat 914.727 kb on - strandat 914.727 kb on - strandat 914.727 kb on - strandat 914.796 kb on - strandat 914.871 kb on + strandat 914.871 kb on + strandat 914.872 kb on - strandat 914.872 kb on - strandat 914.872 kb on - strandat 914.872 kb on - strandat 914.926 kb on + strandat 914.958 kb on + strandat 914.958 kb on + strandat 914.958 kb on + strandat 914.958 kb on + strandat 914.958 kb on + strandat 914.959 kb on - strandat 914.959 kb on - strandat 914.959 kb on - strandat 914.959 kb on - strandat 915.033 kb on + strand, within PFR28_00841at 915.034 kb on - strand, within PFR28_00841at 915.034 kb on - strand, within PFR28_00841at 915.034 kb on - strand, within PFR28_00841at 915.034 kb on - strand, within PFR28_00841at 915.054 kb on - strand, within PFR28_00841at 915.054 kb on - strand, within PFR28_00841at 915.054 kb on - strand, within PFR28_00841at 915.054 kb on - strand, within PFR28_00841at 915.054 kb on - strand, within PFR28_00841at 915.054 kb on - strand, within PFR28_00841at 915.054 kb on - strand, within PFR28_00841at 915.161 kb on + strand, within PFR28_00841at 915.161 kb on + strand, within PFR28_00841at 915.161 kb on + strand, within PFR28_00841at 915.161 kb on + strand, within PFR28_00841at 915.161 kb on + strand, within PFR28_00841at 915.161 kb on + strand, within PFR28_00841at 915.161 kb on + strand, within PFR28_00841at 915.162 kb on - strand, within PFR28_00841at 915.162 kb on - strand, within PFR28_00841at 915.162 kb on - strand, within PFR28_00841at 915.162 kb on - strand, within PFR28_00841at 915.162 kb on - strand, within PFR28_00841at 915.185 kb on + strand, within PFR28_00841at 915.185 kb on + strand, within PFR28_00841at 915.185 kb on + strand, within PFR28_00841at 915.185 kb on + strand, within PFR28_00841at 915.185 kb on + strand, within PFR28_00841at 915.185 kb on + strand, within PFR28_00841at 915.185 kb on + strand, within PFR28_00841at 915.186 kb on - strand, within PFR28_00841at 915.186 kb on - strand, within PFR28_00841at 915.419 kb on - strandat 915.434 kb on + strandat 915.434 kb on + strandat 915.434 kb on + strandat 915.435 kb on - strandat 915.435 kb on - strandat 915.557 kb on + strand, within PFR28_00842at 915.557 kb on + strand, within PFR28_00842at 915.558 kb on - strand, within PFR28_00842at 915.558 kb on - strand, within PFR28_00842at 915.644 kb on - strand, within PFR28_00842at 915.719 kb on + strand, within PFR28_00842at 915.719 kb on + strand, within PFR28_00842at 915.719 kb on + strand, within PFR28_00842at 915.719 kb on + strand, within PFR28_00842at 915.719 kb on + strand, within PFR28_00842at 915.719 kb on + strand, within PFR28_00842at 915.719 kb on + strand, within PFR28_00842at 915.719 kb on + strand, within PFR28_00842at 915.720 kb on - strand, within PFR28_00842at 915.720 kb on - strand, within PFR28_00842at 915.720 kb on - strand, within PFR28_00842at 915.720 kb on - strand, within PFR28_00842at 915.720 kb on - strand, within PFR28_00842at 915.720 kb on - strand, within PFR28_00842at 915.734 kb on + strand, within PFR28_00842at 915.734 kb on + strand, within PFR28_00842at 915.734 kb on + strand, within PFR28_00842at 915.735 kb on - strand, within PFR28_00842at 915.907 kb on + strand, within PFR28_00842at 915.907 kb on + strand, within PFR28_00842at 915.907 kb on + strand, within PFR28_00842at 915.907 kb on + strand, within PFR28_00842at 915.907 kb on + strand, within PFR28_00842at 915.907 kb on + strand, within PFR28_00842at 915.907 kb on + strand, within PFR28_00842at 915.908 kb on - strand, within PFR28_00842at 915.908 kb on - strand, within PFR28_00842at 915.908 kb on - strand, within PFR28_00842at 915.908 kb on - strand, within PFR28_00842at 915.908 kb on - strand, within PFR28_00842at 915.908 kb on - strand, within PFR28_00842at 915.908 kb on - strand, within PFR28_00842at 915.977 kb on + strand, within PFR28_00842at 915.977 kb on + strand, within PFR28_00842at 915.977 kb on + strand, within PFR28_00842at 915.977 kb on + strand, within PFR28_00842at 915.978 kb on - strand, within PFR28_00842at 916.101 kb on - strand, within PFR28_00842at 916.450 kb on + strandat 916.450 kb on + strandat 916.451 kb on - strandat 916.491 kb on + strandat 916.491 kb on + strandat 916.491 kb on + strandat 916.951 kb on - strandat 917.035 kb on - strand, within PFR28_00844at 917.365 kb on - strandat 917.371 kb on + strandat 917.371 kb on + strandat 917.371 kb on + strandat 917.371 kb on + strandat 917.371 kb on + strandat 917.371 kb on + strandat 917.372 kb on - strandat 917.372 kb on - strandat 917.372 kb on - strandat 917.372 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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914,707 + -1.7
914,723 + +0.6
914,723 + -3.3
914,723 + -0.4
914,724 - -2.1
914,724 - -3.0
914,726 + -0.4
914,726 + -0.7
914,726 + -1.6
914,726 + -0.5
914,727 - -1.4
914,727 - +0.2
914,727 - -2.9
914,727 - -1.9
914,796 - -0.7
914,871 + +0.9
914,871 + -0.3
914,872 - +1.3
914,872 - -0.8
914,872 - -1.2
914,872 - -0.7
914,926 + -2.1
914,958 + +0.6
914,958 + +1.9
914,958 + +0.3
914,958 + -0.0
914,958 + +0.1
914,959 - -0.5
914,959 - -1.7
914,959 - -0.3
914,959 - -0.3
915,033 + PFR28_00841 0.20 -0.1
915,034 - PFR28_00841 0.20 -0.3
915,034 - PFR28_00841 0.20 +0.6
915,034 - PFR28_00841 0.20 -0.2
915,034 - PFR28_00841 0.20 -0.8
915,054 - PFR28_00841 0.24 -1.3
915,054 - PFR28_00841 0.24 +1.1
915,054 - PFR28_00841 0.24 -1.8
915,054 - PFR28_00841 0.24 +0.4
915,054 - PFR28_00841 0.24 -0.1
915,054 - PFR28_00841 0.24 -0.8
915,054 - PFR28_00841 0.24 -1.0
915,161 + PFR28_00841 0.45 +0.8
915,161 + PFR28_00841 0.45 -0.3
915,161 + PFR28_00841 0.45 -0.5
915,161 + PFR28_00841 0.45 +0.4
915,161 + PFR28_00841 0.45 -0.0
915,161 + PFR28_00841 0.45 -1.5
915,161 + PFR28_00841 0.45 -2.5
915,162 - PFR28_00841 0.45 +1.0
915,162 - PFR28_00841 0.45 -0.2
915,162 - PFR28_00841 0.45 -1.4
915,162 - PFR28_00841 0.45 +0.2
915,162 - PFR28_00841 0.45 -0.8
915,185 + PFR28_00841 0.50 -1.6
915,185 + PFR28_00841 0.50 +0.4
915,185 + PFR28_00841 0.50 -1.9
915,185 + PFR28_00841 0.50 +0.1
915,185 + PFR28_00841 0.50 -1.5
915,185 + PFR28_00841 0.50 -1.0
915,185 + PFR28_00841 0.50 -0.3
915,186 - PFR28_00841 0.50 -0.9
915,186 - PFR28_00841 0.50 -1.2
915,419 - -1.4
915,434 + -0.1
915,434 + +0.4
915,434 + +0.9
915,435 - -0.9
915,435 - -0.7
915,557 + PFR28_00842 0.11 -0.9
915,557 + PFR28_00842 0.11 -0.4
915,558 - PFR28_00842 0.12 -2.3
915,558 - PFR28_00842 0.12 -3.4
915,644 - PFR28_00842 0.20 -0.9
915,719 + PFR28_00842 0.28 -0.1
915,719 + PFR28_00842 0.28 -0.9
915,719 + PFR28_00842 0.28 -0.6
915,719 + PFR28_00842 0.28 -0.5
915,719 + PFR28_00842 0.28 -1.0
915,719 + PFR28_00842 0.28 -1.5
915,719 + PFR28_00842 0.28 -0.4
915,719 + PFR28_00842 0.28 -0.5
915,720 - PFR28_00842 0.28 -0.9
915,720 - PFR28_00842 0.28 -0.4
915,720 - PFR28_00842 0.28 -0.1
915,720 - PFR28_00842 0.28 -1.5
915,720 - PFR28_00842 0.28 -0.8
915,720 - PFR28_00842 0.28 +0.3
915,734 + PFR28_00842 0.30 -0.6
915,734 + PFR28_00842 0.30 -0.4
915,734 + PFR28_00842 0.30 -0.4
915,735 - PFR28_00842 0.30 -0.7
915,907 + PFR28_00842 0.48 -0.1
915,907 + PFR28_00842 0.48 -3.2
915,907 + PFR28_00842 0.48 -0.6
915,907 + PFR28_00842 0.48 -1.0
915,907 + PFR28_00842 0.48 -1.2
915,907 + PFR28_00842 0.48 -1.9
915,907 + PFR28_00842 0.48 -0.2
915,908 - PFR28_00842 0.48 -0.3
915,908 - PFR28_00842 0.48 -1.1
915,908 - PFR28_00842 0.48 -0.6
915,908 - PFR28_00842 0.48 -1.8
915,908 - PFR28_00842 0.48 -1.2
915,908 - PFR28_00842 0.48 -0.6
915,908 - PFR28_00842 0.48 -2.3
915,977 + PFR28_00842 0.55 -0.4
915,977 + PFR28_00842 0.55 -2.7
915,977 + PFR28_00842 0.55 +0.2
915,977 + PFR28_00842 0.55 +0.9
915,978 - PFR28_00842 0.55 -1.9
916,101 - PFR28_00842 0.68 -0.1
916,450 + -0.1
916,450 + -0.3
916,451 - -1.0
916,491 + -0.5
916,491 + -1.1
916,491 + -1.3
916,951 - -0.8
917,035 - PFR28_00844 0.17 +0.1
917,365 - -0.6
917,371 + -0.5
917,371 + -0.2
917,371 + -0.8
917,371 + +0.6
917,371 + +0.0
917,371 + +1.3
917,372 - -0.4
917,372 - -1.0
917,372 - -0.7
917,372 - -0.7

Or see this region's nucleotide sequence