Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00825 and PFR28_00826 are separated by 131 nucleotides PFR28_00826 and PFR28_00827 are separated by 11 nucleotides PFR28_00827 and PFR28_00828 are separated by 172 nucleotides
PFR28_00825: PFR28_00825 - B-type flagellar hook-associated protein 2, at 898,019 to 899,455
_00825
PFR28_00826: PFR28_00826 - Flagellar secretion chaperone FliS, at 899,587 to 899,982
_00826
PFR28_00827: PFR28_00827 - hypothetical protein, at 899,994 to 900,290
_00827
PFR28_00828: PFR28_00828 - Anaerobic nitric oxide reductase transcription regulator NorR, at 900,463 to 901,938
_00828
Position (kb) 899
900 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 898.636 kb on + strand, within PFR28_00825 at 898.636 kb on + strand, within PFR28_00825 at 898.636 kb on + strand, within PFR28_00825 at 898.636 kb on + strand, within PFR28_00825 at 898.637 kb on - strand, within PFR28_00825 at 898.698 kb on + strand, within PFR28_00825 at 898.748 kb on - strand, within PFR28_00825 at 898.748 kb on - strand, within PFR28_00825 at 898.753 kb on + strand, within PFR28_00825 at 898.753 kb on + strand, within PFR28_00825 at 898.753 kb on + strand, within PFR28_00825 at 898.754 kb on - strand, within PFR28_00825 at 898.754 kb on - strand, within PFR28_00825 at 898.754 kb on - strand, within PFR28_00825 at 898.865 kb on + strand, within PFR28_00825 at 898.865 kb on + strand, within PFR28_00825 at 898.865 kb on + strand, within PFR28_00825 at 898.865 kb on + strand, within PFR28_00825 at 898.865 kb on + strand, within PFR28_00825 at 898.865 kb on + strand, within PFR28_00825 at 898.865 kb on + strand, within PFR28_00825 at 898.865 kb on + strand, within PFR28_00825 at 898.865 kb on + strand, within PFR28_00825 at 898.865 kb on + strand, within PFR28_00825 at 898.866 kb on - strand, within PFR28_00825 at 898.866 kb on - strand, within PFR28_00825 at 898.866 kb on - strand, within PFR28_00825 at 898.866 kb on - strand, within PFR28_00825 at 898.866 kb on - strand, within PFR28_00825 at 898.866 kb on - strand, within PFR28_00825 at 898.866 kb on - strand, within PFR28_00825 at 898.868 kb on - strand, within PFR28_00825 at 898.924 kb on + strand, within PFR28_00825 at 898.924 kb on + strand, within PFR28_00825 at 898.924 kb on + strand, within PFR28_00825 at 898.924 kb on + strand, within PFR28_00825 at 898.925 kb on - strand, within PFR28_00825 at 898.925 kb on - strand, within PFR28_00825 at 898.925 kb on - strand, within PFR28_00825 at 898.925 kb on - strand, within PFR28_00825 at 898.925 kb on - strand, within PFR28_00825 at 899.047 kb on + strand, within PFR28_00825 at 899.047 kb on + strand, within PFR28_00825 at 899.048 kb on - strand, within PFR28_00825 at 899.086 kb on + strand, within PFR28_00825 at 899.086 kb on + strand, within PFR28_00825 at 899.087 kb on - strand, within PFR28_00825 at 899.195 kb on + strand, within PFR28_00825 at 899.195 kb on + strand, within PFR28_00825 at 899.195 kb on + strand, within PFR28_00825 at 899.195 kb on + strand, within PFR28_00825 at 899.196 kb on - strand, within PFR28_00825 at 899.196 kb on - strand, within PFR28_00825 at 899.197 kb on + strand, within PFR28_00825 at 899.197 kb on + strand, within PFR28_00825 at 899.336 kb on - strand at 899.357 kb on + strand at 899.358 kb on - strand at 899.365 kb on + strand at 899.410 kb on + strand at 899.410 kb on + strand at 899.410 kb on + strand at 899.410 kb on + strand at 899.410 kb on + strand at 899.410 kb on + strand at 899.410 kb on + strand at 899.411 kb on - strand at 899.411 kb on - strand at 899.411 kb on - strand at 899.411 kb on - strand at 899.411 kb on - strand at 899.492 kb on + strand at 899.493 kb on - strand at 899.554 kb on + strand at 899.554 kb on + strand at 899.555 kb on - strand at 899.556 kb on + strand at 899.556 kb on + strand at 899.556 kb on + strand at 899.557 kb on - strand at 899.557 kb on - strand at 899.557 kb on - strand at 899.557 kb on - strand at 899.572 kb on + strand at 899.581 kb on + strand at 899.581 kb on + strand at 899.581 kb on + strand at 899.581 kb on + strand at 899.582 kb on - strand at 899.582 kb on - strand at 899.582 kb on - strand at 899.582 kb on - strand at 899.669 kb on + strand, within PFR28_00826 at 899.669 kb on + strand, within PFR28_00826 at 899.669 kb on + strand, within PFR28_00826 at 899.669 kb on + strand, within PFR28_00826 at 899.669 kb on + strand, within PFR28_00826 at 899.670 kb on - strand, within PFR28_00826 at 899.670 kb on - strand, within PFR28_00826 at 899.670 kb on - strand, within PFR28_00826 at 899.670 kb on - strand, within PFR28_00826 at 899.670 kb on - strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.981 kb on - strand at 899.987 kb on + strand at 899.987 kb on + strand at 899.987 kb on + strand at 899.987 kb on + strand at 899.987 kb on + strand at 899.988 kb on - strand at 899.988 kb on - strand at 899.988 kb on - strand at 899.988 kb on - strand at 899.988 kb on - strand at 899.988 kb on - strand at 899.988 kb on - strand at 900.059 kb on + strand, within PFR28_00827 at 900.059 kb on + strand, within PFR28_00827 at 900.155 kb on + strand, within PFR28_00827 at 900.155 kb on + strand, within PFR28_00827 at 900.155 kb on + strand, within PFR28_00827 at 900.155 kb on + strand, within PFR28_00827 at 900.155 kb on + strand, within PFR28_00827 at 900.155 kb on + strand, within PFR28_00827 at 900.156 kb on - strand, within PFR28_00827 at 900.180 kb on + strand, within PFR28_00827 at 900.180 kb on + strand, within PFR28_00827 at 900.181 kb on - strand, within PFR28_00827 at 900.181 kb on - strand, within PFR28_00827 at 900.273 kb on + strand at 900.273 kb on + strand at 900.302 kb on + strand at 900.302 kb on + strand at 900.302 kb on + strand at 900.303 kb on - strand at 900.303 kb on - strand at 900.352 kb on + strand at 900.352 kb on + strand at 900.352 kb on + strand at 900.352 kb on + strand at 900.352 kb on + strand at 900.352 kb on + strand at 900.352 kb on + strand at 900.352 kb on + strand at 900.352 kb on + strand at 900.352 kb on + strand at 900.353 kb on - strand at 900.353 kb on - strand at 900.353 kb on - strand at 900.353 kb on - strand at 900.356 kb on + strand at 900.357 kb on - strand at 900.357 kb on - strand at 900.384 kb on + strand at 900.384 kb on + strand at 900.384 kb on + strand at 900.384 kb on + strand at 900.411 kb on + strand at 900.411 kb on + strand at 900.445 kb on + strand at 900.457 kb on + strand at 900.457 kb on + strand at 900.457 kb on + strand at 900.458 kb on - strand at 900.458 kb on - strand at 900.458 kb on - strand at 900.458 kb on - strand at 900.501 kb on + strand at 900.641 kb on + strand, within PFR28_00828 at 900.641 kb on + strand, within PFR28_00828 at 900.641 kb on + strand, within PFR28_00828 at 900.641 kb on + strand, within PFR28_00828 at 900.641 kb on + strand, within PFR28_00828 at 900.641 kb on + strand, within PFR28_00828 at 900.642 kb on - strand, within PFR28_00828 at 900.642 kb on - strand, within PFR28_00828 at 900.642 kb on - strand, within PFR28_00828 at 900.642 kb on - strand, within PFR28_00828 at 900.793 kb on + strand, within PFR28_00828 at 900.793 kb on + strand, within PFR28_00828 at 900.832 kb on + strand, within PFR28_00828 at 900.833 kb on - strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.906 kb on + strand, within PFR28_00828 at 900.971 kb on + strand, within PFR28_00828 at 900.971 kb on + strand, within PFR28_00828 at 900.972 kb on - strand, within PFR28_00828
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 898,636 + PFR28_00825 0.43 +1.3 898,636 + PFR28_00825 0.43 -0.1 898,636 + PFR28_00825 0.43 -1.3 898,636 + PFR28_00825 0.43 -1.2 898,637 - PFR28_00825 0.43 +2.7 898,698 + PFR28_00825 0.47 +0.3 898,748 - PFR28_00825 0.51 -2.5 898,748 - PFR28_00825 0.51 +0.2 898,753 + PFR28_00825 0.51 -1.8 898,753 + PFR28_00825 0.51 -1.0 898,753 + PFR28_00825 0.51 -0.9 898,754 - PFR28_00825 0.51 -1.5 898,754 - PFR28_00825 0.51 -2.6 898,754 - PFR28_00825 0.51 -2.4 898,865 + PFR28_00825 0.59 -0.0 898,865 + PFR28_00825 0.59 -0.3 898,865 + PFR28_00825 0.59 -0.7 898,865 + PFR28_00825 0.59 -3.8 898,865 + PFR28_00825 0.59 +0.9 898,865 + PFR28_00825 0.59 -1.7 898,865 + PFR28_00825 0.59 +0.3 898,865 + PFR28_00825 0.59 -0.3 898,865 + PFR28_00825 0.59 -1.1 898,865 + PFR28_00825 0.59 -0.1 898,866 - PFR28_00825 0.59 -2.0 898,866 - PFR28_00825 0.59 +1.0 898,866 - PFR28_00825 0.59 -1.0 898,866 - PFR28_00825 0.59 -0.7 898,866 - PFR28_00825 0.59 -2.1 898,866 - PFR28_00825 0.59 -3.1 898,866 - PFR28_00825 0.59 -1.4 898,868 - PFR28_00825 0.59 -1.0 898,924 + PFR28_00825 0.63 -0.3 898,924 + PFR28_00825 0.63 -0.8 898,924 + PFR28_00825 0.63 -1.5 898,924 + PFR28_00825 0.63 +0.0 898,925 - PFR28_00825 0.63 -1.7 898,925 - PFR28_00825 0.63 +1.3 898,925 - PFR28_00825 0.63 -0.3 898,925 - PFR28_00825 0.63 -0.7 898,925 - PFR28_00825 0.63 +0.3 899,047 + PFR28_00825 0.72 -1.0 899,047 + PFR28_00825 0.72 -0.7 899,048 - PFR28_00825 0.72 +1.1 899,086 + PFR28_00825 0.74 +0.1 899,086 + PFR28_00825 0.74 -1.5 899,087 - PFR28_00825 0.74 -3.0 899,195 + PFR28_00825 0.82 -3.1 899,195 + PFR28_00825 0.82 +0.9 899,195 + PFR28_00825 0.82 -0.9 899,195 + PFR28_00825 0.82 -1.5 899,196 - PFR28_00825 0.82 -1.0 899,196 - PFR28_00825 0.82 -0.7 899,197 + PFR28_00825 0.82 +0.4 899,197 + PFR28_00825 0.82 -1.3 899,336 - +0.3 899,357 + -0.2 899,358 - -2.1 899,365 + +0.0 899,410 + -0.1 899,410 + +0.2 899,410 + +0.3 899,410 + +0.5 899,410 + +0.2 899,410 + +1.5 899,410 + +0.3 899,411 - -1.3 899,411 - +0.5 899,411 - -0.7 899,411 - -1.7 899,411 - +1.0 899,492 + +1.2 899,493 - -0.7 899,554 + +0.2 899,554 + -0.3 899,555 - +0.3 899,556 + +0.1 899,556 + -1.1 899,556 + -0.3 899,557 - -2.1 899,557 - -1.5 899,557 - +0.0 899,557 - -2.6 899,572 + -0.2 899,581 + -0.3 899,581 + -0.1 899,581 + -2.6 899,581 + +0.2 899,582 - -0.7 899,582 - -1.0 899,582 - +0.0 899,582 - -2.7 899,669 + PFR28_00826 0.21 -1.7 899,669 + PFR28_00826 0.21 -1.6 899,669 + PFR28_00826 0.21 +0.3 899,669 + PFR28_00826 0.21 -1.4 899,669 + PFR28_00826 0.21 -2.1 899,670 - PFR28_00826 0.21 -1.3 899,670 - PFR28_00826 0.21 +2.1 899,670 - PFR28_00826 0.21 -0.3 899,670 - PFR28_00826 0.21 +0.5 899,670 - PFR28_00826 0.21 -0.5 899,854 + PFR28_00826 0.67 -1.5 899,854 + PFR28_00826 0.67 +0.7 899,854 + PFR28_00826 0.67 -1.3 899,854 + PFR28_00826 0.67 +1.3 899,854 + PFR28_00826 0.67 -1.4 899,854 + PFR28_00826 0.67 -2.0 899,854 + PFR28_00826 0.67 -1.3 899,854 + PFR28_00826 0.67 -1.3 899,854 + PFR28_00826 0.67 -0.3 899,854 + PFR28_00826 0.67 +0.3 899,854 + PFR28_00826 0.67 -0.3 899,854 + PFR28_00826 0.67 -1.0 899,854 + PFR28_00826 0.67 -0.7 899,855 - PFR28_00826 0.68 -1.5 899,855 - PFR28_00826 0.68 -1.0 899,855 - PFR28_00826 0.68 -0.4 899,855 - PFR28_00826 0.68 -1.0 899,855 - PFR28_00826 0.68 -0.4 899,855 - PFR28_00826 0.68 +0.3 899,855 - PFR28_00826 0.68 -2.1 899,855 - PFR28_00826 0.68 +0.3 899,855 - PFR28_00826 0.68 +1.3 899,855 - PFR28_00826 0.68 -0.7 899,855 - PFR28_00826 0.68 +0.3 899,855 - PFR28_00826 0.68 -1.4 899,855 - PFR28_00826 0.68 -2.2 899,855 - PFR28_00826 0.68 +2.1 899,855 - PFR28_00826 0.68 -0.7 899,981 - -0.6 899,987 + -0.2 899,987 + +0.7 899,987 + +0.9 899,987 + -0.5 899,987 + -1.4 899,988 - +0.4 899,988 - +1.1 899,988 - -0.3 899,988 - -0.1 899,988 - +0.1 899,988 - -1.1 899,988 - -0.9 900,059 + PFR28_00827 0.22 +1.0 900,059 + PFR28_00827 0.22 -2.2 900,155 + PFR28_00827 0.54 -1.0 900,155 + PFR28_00827 0.54 +0.1 900,155 + PFR28_00827 0.54 -0.6 900,155 + PFR28_00827 0.54 +0.4 900,155 + PFR28_00827 0.54 -0.1 900,155 + PFR28_00827 0.54 +1.3 900,156 - PFR28_00827 0.55 -0.5 900,180 + PFR28_00827 0.63 -1.7 900,180 + PFR28_00827 0.63 -0.3 900,181 - PFR28_00827 0.63 -0.8 900,181 - PFR28_00827 0.63 -0.5 900,273 + -0.1 900,273 + -1.8 900,302 + +1.3 900,302 + -1.4 900,302 + -0.8 900,303 - -2.0 900,303 - +1.0 900,352 + -0.4 900,352 + -0.8 900,352 + +0.2 900,352 + +0.4 900,352 + +0.3 900,352 + +1.0 900,352 + -1.0 900,352 + -0.9 900,352 + -0.3 900,352 + -0.7 900,353 - +0.3 900,353 - -0.1 900,353 - +0.1 900,353 - -1.0 900,356 + +0.3 900,357 - +0.0 900,357 - -0.3 900,384 + -0.8 900,384 + +0.2 900,384 + -0.8 900,384 + -0.0 900,411 + -0.3 900,411 + +0.2 900,445 + +0.7 900,457 + -0.7 900,457 + +0.2 900,457 + -0.2 900,458 - -1.3 900,458 - +0.4 900,458 - +0.1 900,458 - -0.3 900,501 + +0.2 900,641 + PFR28_00828 0.12 +0.2 900,641 + PFR28_00828 0.12 +0.5 900,641 + PFR28_00828 0.12 -0.1 900,641 + PFR28_00828 0.12 +0.3 900,641 + PFR28_00828 0.12 +1.2 900,641 + PFR28_00828 0.12 -0.1 900,642 - PFR28_00828 0.12 -0.1 900,642 - PFR28_00828 0.12 -0.7 900,642 - PFR28_00828 0.12 +0.8 900,642 - PFR28_00828 0.12 -0.9 900,793 + PFR28_00828 0.22 -0.1 900,793 + PFR28_00828 0.22 -0.1 900,832 + PFR28_00828 0.25 -0.9 900,833 - PFR28_00828 0.25 +1.0 900,844 + PFR28_00828 0.26 +0.3 900,844 + PFR28_00828 0.26 +0.5 900,844 + PFR28_00828 0.26 -0.5 900,844 + PFR28_00828 0.26 -0.4 900,844 + PFR28_00828 0.26 -0.2 900,844 + PFR28_00828 0.26 -0.4 900,844 + PFR28_00828 0.26 -0.1 900,844 + PFR28_00828 0.26 +0.8 900,844 + PFR28_00828 0.26 +0.4 900,844 + PFR28_00828 0.26 -1.2 900,844 + PFR28_00828 0.26 +0.8 900,844 + PFR28_00828 0.26 -0.9 900,844 + PFR28_00828 0.26 -0.3 900,844 + PFR28_00828 0.26 +0.3 900,844 + PFR28_00828 0.26 -0.1 900,844 + PFR28_00828 0.26 -1.1 900,844 + PFR28_00828 0.26 -0.1 900,845 - PFR28_00828 0.26 -0.0 900,845 - PFR28_00828 0.26 +1.3 900,845 - PFR28_00828 0.26 -0.7 900,845 - PFR28_00828 0.26 +0.2 900,845 - PFR28_00828 0.26 +0.5 900,845 - PFR28_00828 0.26 +0.7 900,845 - PFR28_00828 0.26 -0.5 900,845 - PFR28_00828 0.26 +0.5 900,845 - PFR28_00828 0.26 +0.4 900,845 - PFR28_00828 0.26 +0.1 900,845 - PFR28_00828 0.26 -1.7 900,845 - PFR28_00828 0.26 -0.0 900,845 - PFR28_00828 0.26 -0.2 900,845 - PFR28_00828 0.26 -1.5 900,845 - PFR28_00828 0.26 +1.1 900,845 - PFR28_00828 0.26 -0.3 900,906 + PFR28_00828 0.30 -0.1 900,971 + PFR28_00828 0.34 -1.8 900,971 + PFR28_00828 0.34 -0.2 900,972 - PFR28_00828 0.34 -0.0
Or see this region's nucleotide sequence