Strain Fitness in Pseudomonas sp. RS175 around PFR28_00807

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00805 and PFR28_00806 are separated by 48 nucleotidesPFR28_00806 and PFR28_00807 are separated by 9 nucleotidesPFR28_00807 and PFR28_00808 are separated by 10 nucleotides PFR28_00805: PFR28_00805 - Flagellar basal-body rod protein FlgG, at 872,782 to 873,567 _00805 PFR28_00806: PFR28_00806 - Flagellar L-ring protein, at 873,616 to 874,311 _00806 PFR28_00807: PFR28_00807 - Flagellar P-ring protein, at 874,321 to 875,427 _00807 PFR28_00808: PFR28_00808 - hypothetical protein, at 875,438 to 876,754 _00808 Position (kb) 874 875 876Strain fitness (log2 ratio) -2 -1 0 1at 873.566 kb on - strandat 873.603 kb on + strandat 873.603 kb on + strandat 873.603 kb on + strandat 873.603 kb on + strandat 873.604 kb on - strandat 873.604 kb on - strandat 873.604 kb on - strandat 873.609 kb on + strandat 873.610 kb on - strandat 873.610 kb on - strandat 873.610 kb on - strandat 873.610 kb on - strandat 873.610 kb on - strandat 873.629 kb on + strandat 873.629 kb on + strandat 873.629 kb on + strandat 873.629 kb on + strandat 873.629 kb on + strandat 873.629 kb on + strandat 873.629 kb on + strandat 873.630 kb on - strandat 873.630 kb on - strandat 873.630 kb on - strandat 873.630 kb on - strandat 873.630 kb on - strandat 873.630 kb on - strandat 873.682 kb on - strandat 873.703 kb on + strand, within PFR28_00806at 873.704 kb on - strand, within PFR28_00806at 873.704 kb on - strand, within PFR28_00806at 873.704 kb on - strand, within PFR28_00806at 873.706 kb on + strand, within PFR28_00806at 873.706 kb on + strand, within PFR28_00806at 873.706 kb on + strand, within PFR28_00806at 873.706 kb on + strand, within PFR28_00806at 873.706 kb on + strand, within PFR28_00806at 873.706 kb on + strand, within PFR28_00806at 873.706 kb on + strand, within PFR28_00806at 873.707 kb on - strand, within PFR28_00806at 873.707 kb on - strand, within PFR28_00806at 873.707 kb on - strand, within PFR28_00806at 873.707 kb on - strand, within PFR28_00806at 873.764 kb on - strand, within PFR28_00806at 873.764 kb on - strand, within PFR28_00806at 873.791 kb on - strand, within PFR28_00806at 873.912 kb on + strand, within PFR28_00806at 874.147 kb on - strand, within PFR28_00806at 874.224 kb on + strand, within PFR28_00806at 874.224 kb on + strand, within PFR28_00806at 874.224 kb on + strand, within PFR28_00806at 874.224 kb on + strand, within PFR28_00806at 874.224 kb on + strand, within PFR28_00806at 874.224 kb on + strand, within PFR28_00806at 874.225 kb on - strand, within PFR28_00806at 874.225 kb on - strand, within PFR28_00806at 874.225 kb on - strand, within PFR28_00806at 874.225 kb on - strand, within PFR28_00806at 874.225 kb on - strand, within PFR28_00806at 874.225 kb on - strand, within PFR28_00806at 874.228 kb on + strand, within PFR28_00806at 874.228 kb on + strand, within PFR28_00806at 874.228 kb on + strand, within PFR28_00806at 874.228 kb on + strand, within PFR28_00806at 874.229 kb on - strand, within PFR28_00806at 874.229 kb on - strand, within PFR28_00806at 874.309 kb on + strandat 874.309 kb on + strandat 874.309 kb on + strandat 874.310 kb on - strandat 874.310 kb on - strandat 874.310 kb on - strandat 874.310 kb on - strandat 874.310 kb on - strandat 874.329 kb on + strandat 874.329 kb on + strandat 874.329 kb on + strandat 874.330 kb on - strandat 874.330 kb on - strandat 874.663 kb on - strand, within PFR28_00807at 874.663 kb on - strand, within PFR28_00807at 874.730 kb on - strand, within PFR28_00807at 874.730 kb on - strand, within PFR28_00807at 875.035 kb on + strand, within PFR28_00807at 875.035 kb on + strand, within PFR28_00807at 875.035 kb on + strand, within PFR28_00807at 875.035 kb on + strand, within PFR28_00807at 875.035 kb on + strand, within PFR28_00807at 875.035 kb on + strand, within PFR28_00807at 875.036 kb on - strand, within PFR28_00807at 875.036 kb on - strand, within PFR28_00807at 875.426 kb on - strandat 875.426 kb on - strandat 875.444 kb on - strandat 875.444 kb on - strandat 875.483 kb on + strandat 875.638 kb on + strand, within PFR28_00808at 875.638 kb on + strand, within PFR28_00808at 875.638 kb on + strand, within PFR28_00808at 875.638 kb on + strand, within PFR28_00808at 875.638 kb on + strand, within PFR28_00808at 875.639 kb on - strand, within PFR28_00808at 875.639 kb on - strand, within PFR28_00808at 875.639 kb on - strand, within PFR28_00808at 875.639 kb on - strand, within PFR28_00808at 875.639 kb on - strand, within PFR28_00808at 875.639 kb on - strand, within PFR28_00808at 875.639 kb on - strand, within PFR28_00808at 875.663 kb on + strand, within PFR28_00808at 875.675 kb on + strand, within PFR28_00808at 875.675 kb on + strand, within PFR28_00808at 875.675 kb on + strand, within PFR28_00808at 875.675 kb on + strand, within PFR28_00808at 875.676 kb on - strand, within PFR28_00808at 876.057 kb on + strand, within PFR28_00808at 876.210 kb on - strand, within PFR28_00808at 876.338 kb on + strand, within PFR28_00808

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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873,566 - -1.2
873,603 + +0.9
873,603 + -0.1
873,603 + +0.2
873,603 + -0.1
873,604 - -0.8
873,604 - -0.6
873,604 - -1.7
873,609 + -0.7
873,610 - +1.6
873,610 - -1.7
873,610 - -1.3
873,610 - -0.6
873,610 - -0.9
873,629 + -0.1
873,629 + +0.9
873,629 + -0.9
873,629 + -0.9
873,629 + +0.3
873,629 + -0.8
873,629 + -0.3
873,630 - -1.2
873,630 - -0.2
873,630 - -0.6
873,630 - -1.9
873,630 - +0.4
873,630 - -0.9
873,682 - -1.2
873,703 + PFR28_00806 0.12 -0.2
873,704 - PFR28_00806 0.13 -2.5
873,704 - PFR28_00806 0.13 -1.0
873,704 - PFR28_00806 0.13 -1.5
873,706 + PFR28_00806 0.13 -0.7
873,706 + PFR28_00806 0.13 -0.7
873,706 + PFR28_00806 0.13 -0.8
873,706 + PFR28_00806 0.13 -1.3
873,706 + PFR28_00806 0.13 -0.0
873,706 + PFR28_00806 0.13 -1.0
873,706 + PFR28_00806 0.13 -0.9
873,707 - PFR28_00806 0.13 -1.5
873,707 - PFR28_00806 0.13 -1.0
873,707 - PFR28_00806 0.13 -1.2
873,707 - PFR28_00806 0.13 -0.6
873,764 - PFR28_00806 0.21 -0.3
873,764 - PFR28_00806 0.21 +0.2
873,791 - PFR28_00806 0.25 -1.3
873,912 + PFR28_00806 0.43 -0.1
874,147 - PFR28_00806 0.76 -0.2
874,224 + PFR28_00806 0.87 -0.3
874,224 + PFR28_00806 0.87 -0.8
874,224 + PFR28_00806 0.87 -0.5
874,224 + PFR28_00806 0.87 -0.1
874,224 + PFR28_00806 0.87 +0.9
874,224 + PFR28_00806 0.87 +0.3
874,225 - PFR28_00806 0.88 -1.1
874,225 - PFR28_00806 0.88 -0.4
874,225 - PFR28_00806 0.88 -1.8
874,225 - PFR28_00806 0.88 +0.5
874,225 - PFR28_00806 0.88 -0.6
874,225 - PFR28_00806 0.88 -0.9
874,228 + PFR28_00806 0.88 -0.6
874,228 + PFR28_00806 0.88 -1.2
874,228 + PFR28_00806 0.88 -0.5
874,228 + PFR28_00806 0.88 +0.2
874,229 - PFR28_00806 0.88 -1.7
874,229 - PFR28_00806 0.88 -0.6
874,309 + -1.9
874,309 + -0.3
874,309 + -0.4
874,310 - -1.1
874,310 - -0.2
874,310 - +0.3
874,310 - -0.8
874,310 - -0.1
874,329 + -1.1
874,329 + -0.7
874,329 + -0.4
874,330 - -0.8
874,330 - -1.8
874,663 - PFR28_00807 0.31 -0.2
874,663 - PFR28_00807 0.31 -1.5
874,730 - PFR28_00807 0.37 -1.1
874,730 - PFR28_00807 0.37 -2.0
875,035 + PFR28_00807 0.64 -1.4
875,035 + PFR28_00807 0.64 -1.1
875,035 + PFR28_00807 0.64 -2.6
875,035 + PFR28_00807 0.64 -0.0
875,035 + PFR28_00807 0.64 -1.0
875,035 + PFR28_00807 0.64 -1.2
875,036 - PFR28_00807 0.65 -1.8
875,036 - PFR28_00807 0.65 -1.6
875,426 - -0.2
875,426 - -0.6
875,444 - +0.2
875,444 - -0.8
875,483 + +0.5
875,638 + PFR28_00808 0.15 -1.0
875,638 + PFR28_00808 0.15 -0.8
875,638 + PFR28_00808 0.15 +0.5
875,638 + PFR28_00808 0.15 +0.2
875,638 + PFR28_00808 0.15 -0.8
875,639 - PFR28_00808 0.15 -1.3
875,639 - PFR28_00808 0.15 -2.4
875,639 - PFR28_00808 0.15 -0.8
875,639 - PFR28_00808 0.15 -2.0
875,639 - PFR28_00808 0.15 +0.3
875,639 - PFR28_00808 0.15 +0.3
875,639 - PFR28_00808 0.15 +1.3
875,663 + PFR28_00808 0.17 +0.1
875,675 + PFR28_00808 0.18 -0.9
875,675 + PFR28_00808 0.18 +0.4
875,675 + PFR28_00808 0.18 -1.2
875,675 + PFR28_00808 0.18 -0.1
875,676 - PFR28_00808 0.18 -0.9
876,057 + PFR28_00808 0.47 +0.6
876,210 - PFR28_00808 0.59 -1.2
876,338 + PFR28_00808 0.68 -1.4

Or see this region's nucleotide sequence