Strain Fitness in Pseudomonas sp. RS175 around PFR28_00529

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00528 and PFR28_00529 are separated by 109 nucleotidesPFR28_00529 and PFR28_00530 are separated by 73 nucleotidesPFR28_00530 and PFR28_00531 are separated by 103 nucleotides PFR28_00528: PFR28_00528 - hypothetical protein, at 562,797 to 564,410 _00528 PFR28_00529: PFR28_00529 - hypothetical protein, at 564,520 to 565,197 _00529 PFR28_00530: PFR28_00530 - hypothetical protein, at 565,271 to 565,870 _00530 PFR28_00531: PFR28_00531 - HTH-type transcriptional regulator DmlR, at 565,974 to 566,888 _00531 Position (kb) 564 565 566Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 563.572 kb on + strand, within PFR28_00528at 563.572 kb on + strand, within PFR28_00528at 563.572 kb on + strand, within PFR28_00528at 563.572 kb on + strand, within PFR28_00528at 563.572 kb on + strand, within PFR28_00528at 563.572 kb on + strand, within PFR28_00528at 563.572 kb on + strand, within PFR28_00528at 563.572 kb on + strand, within PFR28_00528at 563.572 kb on + strand, within PFR28_00528at 563.572 kb on + strand, within PFR28_00528at 563.572 kb on + strand, within PFR28_00528at 563.572 kb on + strand, within PFR28_00528at 563.572 kb on + strand, within PFR28_00528at 563.572 kb on + strand, within PFR28_00528at 563.572 kb on + strand, within PFR28_00528at 563.573 kb on - strand, within PFR28_00528at 563.573 kb on - strand, within PFR28_00528at 563.573 kb on - strand, within PFR28_00528at 563.573 kb on - strand, within PFR28_00528at 563.573 kb on - strand, within PFR28_00528at 563.573 kb on - strand, within PFR28_00528at 563.573 kb on - strand, within PFR28_00528at 563.573 kb on - strand, within PFR28_00528at 563.573 kb on - strand, within PFR28_00528at 563.573 kb on - strand, within PFR28_00528at 563.573 kb on - strand, within PFR28_00528at 563.574 kb on + strand, within PFR28_00528at 563.574 kb on + strand, within PFR28_00528at 563.574 kb on + strand, within PFR28_00528at 563.574 kb on + strand, within PFR28_00528at 563.575 kb on - strand, within PFR28_00528at 563.575 kb on - strand, within PFR28_00528at 563.575 kb on - strand, within PFR28_00528at 563.615 kb on + strand, within PFR28_00528at 563.616 kb on - strand, within PFR28_00528at 563.616 kb on - strand, within PFR28_00528at 563.616 kb on - strand, within PFR28_00528at 563.616 kb on - strand, within PFR28_00528at 563.616 kb on - strand, within PFR28_00528at 563.651 kb on + strand, within PFR28_00528at 563.651 kb on + strand, within PFR28_00528at 563.651 kb on + strand, within PFR28_00528at 563.651 kb on + strand, within PFR28_00528at 563.651 kb on + strand, within PFR28_00528at 563.652 kb on - strand, within PFR28_00528at 563.652 kb on - strand, within PFR28_00528at 563.652 kb on - strand, within PFR28_00528at 563.652 kb on - strand, within PFR28_00528at 563.818 kb on + strand, within PFR28_00528at 563.818 kb on + strand, within PFR28_00528at 563.819 kb on - strand, within PFR28_00528at 563.902 kb on + strand, within PFR28_00528at 564.154 kb on + strand, within PFR28_00528at 564.154 kb on + strand, within PFR28_00528at 564.154 kb on + strand, within PFR28_00528at 564.154 kb on + strand, within PFR28_00528at 564.155 kb on - strand, within PFR28_00528at 564.155 kb on - strand, within PFR28_00528at 564.244 kb on + strand, within PFR28_00528at 564.244 kb on + strand, within PFR28_00528at 564.244 kb on + strand, within PFR28_00528at 564.245 kb on - strand, within PFR28_00528at 564.245 kb on - strand, within PFR28_00528at 564.245 kb on - strand, within PFR28_00528at 564.283 kb on + strandat 564.283 kb on + strandat 564.284 kb on - strandat 564.284 kb on - strandat 564.284 kb on - strandat 564.284 kb on - strandat 564.405 kb on + strandat 564.469 kb on + strandat 564.469 kb on + strandat 564.470 kb on - strandat 564.470 kb on - strandat 564.471 kb on + strandat 564.471 kb on + strandat 564.471 kb on + strandat 564.471 kb on + strandat 564.472 kb on - strandat 564.499 kb on + strandat 564.500 kb on - strandat 564.500 kb on - strandat 564.546 kb on - strandat 564.546 kb on - strandat 564.716 kb on + strand, within PFR28_00529at 564.716 kb on + strand, within PFR28_00529at 564.716 kb on + strand, within PFR28_00529at 564.716 kb on + strand, within PFR28_00529at 564.870 kb on - strand, within PFR28_00529at 565.254 kb on + strandat 565.254 kb on + strandat 565.254 kb on + strandat 565.277 kb on + strandat 565.277 kb on + strandat 565.277 kb on + strandat 565.277 kb on + strandat 565.278 kb on - strandat 565.278 kb on - strandat 565.278 kb on - strandat 565.278 kb on - strandat 565.323 kb on + strandat 565.324 kb on - strandat 565.380 kb on + strand, within PFR28_00530at 565.380 kb on + strand, within PFR28_00530at 565.380 kb on + strand, within PFR28_00530at 565.380 kb on + strand, within PFR28_00530at 565.380 kb on + strand, within PFR28_00530at 565.380 kb on + strand, within PFR28_00530at 565.380 kb on + strand, within PFR28_00530at 565.380 kb on + strand, within PFR28_00530at 565.380 kb on + strand, within PFR28_00530at 565.380 kb on + strand, within PFR28_00530at 565.380 kb on + strand, within PFR28_00530at 565.380 kb on + strand, within PFR28_00530at 565.381 kb on - strand, within PFR28_00530at 565.381 kb on - strand, within PFR28_00530at 565.381 kb on - strand, within PFR28_00530at 565.381 kb on - strand, within PFR28_00530at 565.381 kb on - strand, within PFR28_00530at 565.381 kb on - strand, within PFR28_00530at 565.381 kb on - strand, within PFR28_00530at 565.381 kb on - strand, within PFR28_00530at 565.381 kb on - strand, within PFR28_00530at 565.381 kb on - strand, within PFR28_00530at 565.572 kb on + strand, within PFR28_00530at 565.572 kb on + strand, within PFR28_00530at 565.573 kb on - strand, within PFR28_00530at 565.573 kb on - strand, within PFR28_00530at 565.573 kb on - strand, within PFR28_00530at 565.906 kb on + strandat 565.907 kb on - strandat 565.907 kb on - strandat 565.920 kb on - strandat 565.928 kb on - strandat 565.928 kb on - strandat 565.937 kb on - strandat 566.147 kb on + strand, within PFR28_00531

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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563,572 + PFR28_00528 0.48 +0.7
563,572 + PFR28_00528 0.48 -0.5
563,572 + PFR28_00528 0.48 +1.2
563,572 + PFR28_00528 0.48 -0.3
563,572 + PFR28_00528 0.48 +1.1
563,572 + PFR28_00528 0.48 -0.7
563,572 + PFR28_00528 0.48 -0.6
563,572 + PFR28_00528 0.48 +0.0
563,572 + PFR28_00528 0.48 -0.9
563,572 + PFR28_00528 0.48 -0.3
563,572 + PFR28_00528 0.48 -0.2
563,572 + PFR28_00528 0.48 -1.3
563,572 + PFR28_00528 0.48 +1.4
563,572 + PFR28_00528 0.48 -2.1
563,572 + PFR28_00528 0.48 +0.2
563,573 - PFR28_00528 0.48 -1.1
563,573 - PFR28_00528 0.48 -2.6
563,573 - PFR28_00528 0.48 -1.4
563,573 - PFR28_00528 0.48 -0.5
563,573 - PFR28_00528 0.48 +1.0
563,573 - PFR28_00528 0.48 +0.1
563,573 - PFR28_00528 0.48 -0.9
563,573 - PFR28_00528 0.48 -0.5
563,573 - PFR28_00528 0.48 -1.4
563,573 - PFR28_00528 0.48 -1.4
563,573 - PFR28_00528 0.48 -1.1
563,574 + PFR28_00528 0.48 +0.9
563,574 + PFR28_00528 0.48 -0.0
563,574 + PFR28_00528 0.48 -0.9
563,574 + PFR28_00528 0.48 -0.9
563,575 - PFR28_00528 0.48 +0.8
563,575 - PFR28_00528 0.48 -0.3
563,575 - PFR28_00528 0.48 -0.4
563,615 + PFR28_00528 0.51 -0.2
563,616 - PFR28_00528 0.51 +0.3
563,616 - PFR28_00528 0.51 +0.3
563,616 - PFR28_00528 0.51 +0.3
563,616 - PFR28_00528 0.51 +0.2
563,616 - PFR28_00528 0.51 -0.0
563,651 + PFR28_00528 0.53 -0.6
563,651 + PFR28_00528 0.53 +1.0
563,651 + PFR28_00528 0.53 +0.5
563,651 + PFR28_00528 0.53 +0.8
563,651 + PFR28_00528 0.53 -1.7
563,652 - PFR28_00528 0.53 +0.5
563,652 - PFR28_00528 0.53 -2.2
563,652 - PFR28_00528 0.53 -0.6
563,652 - PFR28_00528 0.53 -0.9
563,818 + PFR28_00528 0.63 -0.3
563,818 + PFR28_00528 0.63 -1.7
563,819 - PFR28_00528 0.63 -0.7
563,902 + PFR28_00528 0.68 +1.0
564,154 + PFR28_00528 0.84 -0.1
564,154 + PFR28_00528 0.84 -0.6
564,154 + PFR28_00528 0.84 -1.9
564,154 + PFR28_00528 0.84 -0.9
564,155 - PFR28_00528 0.84 -2.3
564,155 - PFR28_00528 0.84 +0.5
564,244 + PFR28_00528 0.90 +0.9
564,244 + PFR28_00528 0.90 +0.0
564,244 + PFR28_00528 0.90 -0.2
564,245 - PFR28_00528 0.90 +0.9
564,245 - PFR28_00528 0.90 +0.2
564,245 - PFR28_00528 0.90 -1.9
564,283 + -0.5
564,283 + +1.8
564,284 - +2.1
564,284 - +0.8
564,284 - +2.1
564,284 - +2.0
564,405 + +0.5
564,469 + -0.2
564,469 + -0.7
564,470 - +0.7
564,470 - +0.5
564,471 + +0.2
564,471 + -0.2
564,471 + -0.4
564,471 + -0.2
564,472 - -0.4
564,499 + +0.2
564,500 - +0.3
564,500 - -1.9
564,546 - -0.1
564,546 - -0.7
564,716 + PFR28_00529 0.29 -1.4
564,716 + PFR28_00529 0.29 -0.1
564,716 + PFR28_00529 0.29 -1.8
564,716 + PFR28_00529 0.29 -1.4
564,870 - PFR28_00529 0.52 -1.8
565,254 + +0.1
565,254 + -1.1
565,254 + -0.6
565,277 + -0.5
565,277 + +0.6
565,277 + -0.6
565,277 + -0.3
565,278 - +0.6
565,278 - -0.1
565,278 - +1.1
565,278 - -1.1
565,323 + +1.3
565,324 - -0.9
565,380 + PFR28_00530 0.18 -0.4
565,380 + PFR28_00530 0.18 +0.1
565,380 + PFR28_00530 0.18 -0.3
565,380 + PFR28_00530 0.18 +0.1
565,380 + PFR28_00530 0.18 +0.2
565,380 + PFR28_00530 0.18 -0.1
565,380 + PFR28_00530 0.18 -1.3
565,380 + PFR28_00530 0.18 -3.3
565,380 + PFR28_00530 0.18 -0.8
565,380 + PFR28_00530 0.18 +0.6
565,380 + PFR28_00530 0.18 +0.2
565,380 + PFR28_00530 0.18 -0.5
565,381 - PFR28_00530 0.18 -0.8
565,381 - PFR28_00530 0.18 -1.9
565,381 - PFR28_00530 0.18 -1.1
565,381 - PFR28_00530 0.18 +1.1
565,381 - PFR28_00530 0.18 -0.3
565,381 - PFR28_00530 0.18 +1.1
565,381 - PFR28_00530 0.18 +0.4
565,381 - PFR28_00530 0.18 -0.6
565,381 - PFR28_00530 0.18 -0.7
565,381 - PFR28_00530 0.18 -1.2
565,572 + PFR28_00530 0.50 +1.4
565,572 + PFR28_00530 0.50 +0.5
565,573 - PFR28_00530 0.50 -3.1
565,573 - PFR28_00530 0.50 +1.3
565,573 - PFR28_00530 0.50 -0.5
565,906 + -1.3
565,907 - -1.1
565,907 - -0.3
565,920 - -1.0
565,928 - -1.3
565,928 - +1.3
565,937 - +0.6
566,147 + PFR28_00531 0.19 +1.0

Or see this region's nucleotide sequence