Strain Fitness in Pseudomonas sp. RS175 around PFR28_00498

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00497 and PFR28_00498 are separated by 191 nucleotidesPFR28_00498 and PFR28_00499 are separated by 352 nucleotides PFR28_00497: PFR28_00497 - hypothetical protein, at 532,331 to 533,338 _00497 PFR28_00498: PFR28_00498 - Cold shock protein CapB, at 533,530 to 533,739 _00498 PFR28_00499: PFR28_00499 - dCTP deaminase, at 534,092 to 534,658 _00499 Position (kb) 533 534Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 532.536 kb on + strand, within PFR28_00497at 532.537 kb on - strand, within PFR28_00497at 532.557 kb on - strand, within PFR28_00497at 532.727 kb on + strand, within PFR28_00497at 532.757 kb on + strand, within PFR28_00497at 532.758 kb on - strand, within PFR28_00497at 532.820 kb on + strand, within PFR28_00497at 532.820 kb on + strand, within PFR28_00497at 532.820 kb on + strand, within PFR28_00497at 532.820 kb on + strand, within PFR28_00497at 532.820 kb on + strand, within PFR28_00497at 532.821 kb on - strand, within PFR28_00497at 532.858 kb on + strand, within PFR28_00497at 532.874 kb on + strand, within PFR28_00497at 532.875 kb on - strand, within PFR28_00497at 532.928 kb on + strand, within PFR28_00497at 532.928 kb on + strand, within PFR28_00497at 532.928 kb on + strand, within PFR28_00497at 532.928 kb on + strand, within PFR28_00497at 532.928 kb on + strand, within PFR28_00497at 532.928 kb on + strand, within PFR28_00497at 532.929 kb on - strand, within PFR28_00497at 532.929 kb on - strand, within PFR28_00497at 532.929 kb on - strand, within PFR28_00497at 532.929 kb on - strand, within PFR28_00497at 532.929 kb on - strand, within PFR28_00497at 532.988 kb on + strand, within PFR28_00497at 533.051 kb on + strand, within PFR28_00497at 533.051 kb on + strand, within PFR28_00497at 533.052 kb on - strand, within PFR28_00497at 533.052 kb on - strand, within PFR28_00497at 533.085 kb on - strand, within PFR28_00497at 533.085 kb on - strand, within PFR28_00497at 533.108 kb on + strand, within PFR28_00497at 533.108 kb on + strand, within PFR28_00497at 533.109 kb on - strand, within PFR28_00497at 533.109 kb on - strand, within PFR28_00497at 533.109 kb on - strand, within PFR28_00497at 533.109 kb on - strand, within PFR28_00497at 533.117 kb on + strand, within PFR28_00497at 533.117 kb on + strand, within PFR28_00497at 533.124 kb on + strand, within PFR28_00497at 533.124 kb on + strand, within PFR28_00497at 533.125 kb on - strand, within PFR28_00497at 533.125 kb on - strand, within PFR28_00497at 533.146 kb on + strand, within PFR28_00497at 533.147 kb on - strand, within PFR28_00497at 533.189 kb on + strand, within PFR28_00497at 533.189 kb on + strand, within PFR28_00497at 533.189 kb on + strand, within PFR28_00497at 533.190 kb on - strand, within PFR28_00497at 533.190 kb on - strand, within PFR28_00497at 533.190 kb on - strand, within PFR28_00497at 533.190 kb on - strand, within PFR28_00497at 533.190 kb on - strand, within PFR28_00497at 533.190 kb on - strand, within PFR28_00497at 533.190 kb on - strand, within PFR28_00497at 533.190 kb on - strand, within PFR28_00497at 533.190 kb on - strand, within PFR28_00497at 533.195 kb on + strand, within PFR28_00497at 533.195 kb on + strand, within PFR28_00497at 533.195 kb on + strand, within PFR28_00497at 533.195 kb on + strand, within PFR28_00497at 533.195 kb on + strand, within PFR28_00497at 533.196 kb on - strand, within PFR28_00497at 533.196 kb on - strand, within PFR28_00497at 533.196 kb on - strand, within PFR28_00497at 533.196 kb on - strand, within PFR28_00497at 533.219 kb on + strand, within PFR28_00497at 533.220 kb on - strand, within PFR28_00497at 533.220 kb on - strand, within PFR28_00497at 533.220 kb on - strand, within PFR28_00497at 533.220 kb on - strand, within PFR28_00497at 533.220 kb on - strand, within PFR28_00497at 533.337 kb on - strandat 533.354 kb on - strandat 533.424 kb on + strandat 533.481 kb on + strandat 533.481 kb on + strandat 533.532 kb on - strandat 533.532 kb on - strandat 533.536 kb on - strandat 533.536 kb on - strandat 533.536 kb on - strandat 533.536 kb on - strandat 533.536 kb on - strandat 533.536 kb on - strandat 533.536 kb on - strandat 533.543 kb on - strandat 533.543 kb on - strandat 533.543 kb on - strandat 533.543 kb on - strandat 533.543 kb on - strandat 533.543 kb on - strandat 533.543 kb on - strandat 533.543 kb on - strandat 533.648 kb on - strand, within PFR28_00498at 533.648 kb on - strand, within PFR28_00498at 533.648 kb on - strand, within PFR28_00498at 533.745 kb on - strandat 533.745 kb on - strandat 533.763 kb on - strandat 533.823 kb on + strandat 533.824 kb on - strandat 533.824 kb on - strandat 533.824 kb on - strandat 533.824 kb on - strandat 533.848 kb on + strandat 533.848 kb on + strandat 533.848 kb on + strandat 533.848 kb on + strandat 533.848 kb on + strandat 533.848 kb on + strandat 533.849 kb on - strandat 533.849 kb on - strandat 533.849 kb on - strandat 533.849 kb on - strandat 533.849 kb on - strandat 533.849 kb on - strandat 533.849 kb on - strandat 533.856 kb on - strandat 533.896 kb on + strandat 534.699 kb on + strandat 534.699 kb on + strandat 534.709 kb on + strandat 534.709 kb on + strandat 534.709 kb on + strandat 534.709 kb on + strandat 534.709 kb on + strandat 534.709 kb on + strandat 534.709 kb on + strandat 534.710 kb on - strandat 534.710 kb on - strandat 534.710 kb on - strandat 534.710 kb on - strandat 534.710 kb on - strandat 534.710 kb on - strandat 534.710 kb on - strandat 534.710 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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532,536 + PFR28_00497 0.20 -1.6
532,537 - PFR28_00497 0.20 -0.6
532,557 - PFR28_00497 0.22 -0.0
532,727 + PFR28_00497 0.39 -3.1
532,757 + PFR28_00497 0.42 -2.3
532,758 - PFR28_00497 0.42 +0.5
532,820 + PFR28_00497 0.49 -0.4
532,820 + PFR28_00497 0.49 -0.3
532,820 + PFR28_00497 0.49 -0.3
532,820 + PFR28_00497 0.49 -0.8
532,820 + PFR28_00497 0.49 -1.6
532,821 - PFR28_00497 0.49 +0.6
532,858 + PFR28_00497 0.52 -0.1
532,874 + PFR28_00497 0.54 +2.1
532,875 - PFR28_00497 0.54 +0.3
532,928 + PFR28_00497 0.59 +0.2
532,928 + PFR28_00497 0.59 +1.2
532,928 + PFR28_00497 0.59 -1.3
532,928 + PFR28_00497 0.59 -0.3
532,928 + PFR28_00497 0.59 +0.6
532,928 + PFR28_00497 0.59 -0.7
532,929 - PFR28_00497 0.59 -1.7
532,929 - PFR28_00497 0.59 +0.6
532,929 - PFR28_00497 0.59 -1.0
532,929 - PFR28_00497 0.59 -0.9
532,929 - PFR28_00497 0.59 -0.7
532,988 + PFR28_00497 0.65 -2.0
533,051 + PFR28_00497 0.71 -0.0
533,051 + PFR28_00497 0.71 +0.7
533,052 - PFR28_00497 0.72 -0.3
533,052 - PFR28_00497 0.72 +0.6
533,085 - PFR28_00497 0.75 +0.1
533,085 - PFR28_00497 0.75 +0.5
533,108 + PFR28_00497 0.77 +0.5
533,108 + PFR28_00497 0.77 +0.5
533,109 - PFR28_00497 0.77 -0.8
533,109 - PFR28_00497 0.77 +1.0
533,109 - PFR28_00497 0.77 -2.0
533,109 - PFR28_00497 0.77 -0.3
533,117 + PFR28_00497 0.78 -0.0
533,117 + PFR28_00497 0.78 -2.2
533,124 + PFR28_00497 0.79 -0.1
533,124 + PFR28_00497 0.79 +0.2
533,125 - PFR28_00497 0.79 +0.0
533,125 - PFR28_00497 0.79 -2.3
533,146 + PFR28_00497 0.81 +0.9
533,147 - PFR28_00497 0.81 -0.4
533,189 + PFR28_00497 0.85 +1.7
533,189 + PFR28_00497 0.85 -2.3
533,189 + PFR28_00497 0.85 +1.0
533,190 - PFR28_00497 0.85 -3.2
533,190 - PFR28_00497 0.85 +1.5
533,190 - PFR28_00497 0.85 +0.3
533,190 - PFR28_00497 0.85 -1.3
533,190 - PFR28_00497 0.85 -0.0
533,190 - PFR28_00497 0.85 +0.0
533,190 - PFR28_00497 0.85 -0.3
533,190 - PFR28_00497 0.85 +0.3
533,190 - PFR28_00497 0.85 +0.8
533,195 + PFR28_00497 0.86 +0.2
533,195 + PFR28_00497 0.86 -0.1
533,195 + PFR28_00497 0.86 -1.0
533,195 + PFR28_00497 0.86 +1.1
533,195 + PFR28_00497 0.86 -1.0
533,196 - PFR28_00497 0.86 -0.1
533,196 - PFR28_00497 0.86 +0.3
533,196 - PFR28_00497 0.86 -0.5
533,196 - PFR28_00497 0.86 -1.9
533,219 + PFR28_00497 0.88 -0.5
533,220 - PFR28_00497 0.88 -1.0
533,220 - PFR28_00497 0.88 -0.1
533,220 - PFR28_00497 0.88 -0.3
533,220 - PFR28_00497 0.88 -0.3
533,220 - PFR28_00497 0.88 +0.3
533,337 - -0.1
533,354 - +0.8
533,424 + -0.7
533,481 + -1.4
533,481 + -0.4
533,532 - -0.3
533,532 - -1.5
533,536 - -0.3
533,536 - -0.3
533,536 - -0.0
533,536 - +0.3
533,536 - -0.3
533,536 - -0.3
533,536 - +0.9
533,543 - +0.2
533,543 - +2.0
533,543 - +0.2
533,543 - +0.4
533,543 - -1.3
533,543 - -0.4
533,543 - +0.2
533,543 - -1.0
533,648 - PFR28_00498 0.56 -1.6
533,648 - PFR28_00498 0.56 -1.5
533,648 - PFR28_00498 0.56 -0.8
533,745 - -0.1
533,745 - -0.1
533,763 - +0.2
533,823 + -3.1
533,824 - +0.3
533,824 - +0.4
533,824 - +0.0
533,824 - -0.2
533,848 + -0.1
533,848 + -0.9
533,848 + +0.3
533,848 + -0.3
533,848 + -0.9
533,848 + +1.3
533,849 - +0.6
533,849 - -2.4
533,849 - +0.8
533,849 - +0.1
533,849 - -0.5
533,849 - +0.8
533,849 - +1.2
533,856 - -1.3
533,896 + -2.0
534,699 + -0.3
534,699 + +0.4
534,709 + -0.4
534,709 + -1.5
534,709 + -0.3
534,709 + +0.0
534,709 + -0.0
534,709 + -0.3
534,709 + -0.1
534,710 - +1.3
534,710 - +1.3
534,710 - +0.3
534,710 - +0.2
534,710 - -0.4
534,710 - +0.7
534,710 - -2.0
534,710 - -0.3

Or see this region's nucleotide sequence