Strain Fitness in Pseudomonas sp. RS175 around PFR28_00448

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00447 and PFR28_00448 overlap by 1 nucleotidesPFR28_00448 and PFR28_00449 overlap by 8 nucleotidesPFR28_00449 and PFR28_00450 are separated by 9 nucleotides PFR28_00447: PFR28_00447 - hypothetical protein, at 486,239 to 488,314 _00447 PFR28_00448: PFR28_00448 - hypothetical protein, at 488,314 to 488,697 _00448 PFR28_00449: PFR28_00449 - hypothetical protein, at 488,690 to 488,902 _00449 PFR28_00450: PFR28_00450 - hypothetical protein, at 488,912 to 489,928 _00450 Position (kb) 488 489Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 487.851 kb on - strand, within PFR28_00447at 487.851 kb on - strand, within PFR28_00447at 487.883 kb on + strand, within PFR28_00447at 487.883 kb on + strand, within PFR28_00447at 487.883 kb on + strand, within PFR28_00447at 487.883 kb on + strand, within PFR28_00447at 487.883 kb on + strand, within PFR28_00447at 487.883 kb on + strand, within PFR28_00447at 487.884 kb on - strand, within PFR28_00447at 487.884 kb on - strand, within PFR28_00447at 487.884 kb on - strand, within PFR28_00447at 488.030 kb on + strand, within PFR28_00447at 488.031 kb on - strand, within PFR28_00447at 488.031 kb on - strand, within PFR28_00447at 488.072 kb on + strand, within PFR28_00447at 488.072 kb on + strand, within PFR28_00447at 488.073 kb on - strand, within PFR28_00447at 488.073 kb on - strand, within PFR28_00447at 488.073 kb on - strand, within PFR28_00447at 488.137 kb on + strandat 488.171 kb on + strandat 488.171 kb on + strandat 488.171 kb on + strandat 488.172 kb on - strandat 488.172 kb on - strandat 488.172 kb on - strandat 488.172 kb on - strandat 488.172 kb on - strandat 488.424 kb on + strand, within PFR28_00448at 488.424 kb on + strand, within PFR28_00448at 488.495 kb on - strand, within PFR28_00448at 488.696 kb on - strandat 488.696 kb on - strandat 488.945 kb on + strandat 489.090 kb on + strand, within PFR28_00450at 489.407 kb on + strand, within PFR28_00450at 489.408 kb on - strand, within PFR28_00450at 489.438 kb on + strand, within PFR28_00450at 489.438 kb on + strand, within PFR28_00450at 489.438 kb on + strand, within PFR28_00450at 489.439 kb on - strand, within PFR28_00450at 489.439 kb on - strand, within PFR28_00450at 489.439 kb on - strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.444 kb on + strand, within PFR28_00450at 489.444 kb on + strand, within PFR28_00450at 489.444 kb on + strand, within PFR28_00450at 489.444 kb on + strand, within PFR28_00450at 489.444 kb on + strand, within PFR28_00450at 489.445 kb on - strand, within PFR28_00450at 489.445 kb on - strand, within PFR28_00450at 489.498 kb on + strand, within PFR28_00450at 489.498 kb on + strand, within PFR28_00450at 489.498 kb on + strand, within PFR28_00450at 489.498 kb on + strand, within PFR28_00450at 489.499 kb on - strand, within PFR28_00450at 489.499 kb on - strand, within PFR28_00450

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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487,851 - PFR28_00447 0.78 -0.4
487,851 - PFR28_00447 0.78 -0.8
487,883 + PFR28_00447 0.79 +1.1
487,883 + PFR28_00447 0.79 -0.9
487,883 + PFR28_00447 0.79 +0.4
487,883 + PFR28_00447 0.79 -1.7
487,883 + PFR28_00447 0.79 +0.1
487,883 + PFR28_00447 0.79 +0.3
487,884 - PFR28_00447 0.79 +0.7
487,884 - PFR28_00447 0.79 -0.3
487,884 - PFR28_00447 0.79 -0.9
488,030 + PFR28_00447 0.86 -1.9
488,031 - PFR28_00447 0.86 +0.1
488,031 - PFR28_00447 0.86 +0.1
488,072 + PFR28_00447 0.88 -0.7
488,072 + PFR28_00447 0.88 +0.1
488,073 - PFR28_00447 0.88 -0.4
488,073 - PFR28_00447 0.88 -1.4
488,073 - PFR28_00447 0.88 -1.1
488,137 + -1.2
488,171 + +0.4
488,171 + -1.5
488,171 + -0.4
488,172 - -1.7
488,172 - +0.5
488,172 - -1.6
488,172 - -0.1
488,172 - -2.6
488,424 + PFR28_00448 0.29 +0.1
488,424 + PFR28_00448 0.29 -1.4
488,495 - PFR28_00448 0.47 -1.7
488,696 - +0.8
488,696 - +0.3
488,945 + +1.1
489,090 + PFR28_00450 0.18 -0.6
489,407 + PFR28_00450 0.49 -1.1
489,408 - PFR28_00450 0.49 -0.3
489,438 + PFR28_00450 0.52 -0.3
489,438 + PFR28_00450 0.52 -2.0
489,438 + PFR28_00450 0.52 +0.1
489,439 - PFR28_00450 0.52 +1.6
489,439 - PFR28_00450 0.52 +0.3
489,439 - PFR28_00450 0.52 -3.0
489,440 + PFR28_00450 0.52 -0.2
489,440 + PFR28_00450 0.52 +0.5
489,440 + PFR28_00450 0.52 -1.5
489,440 + PFR28_00450 0.52 -0.7
489,440 + PFR28_00450 0.52 -1.8
489,440 + PFR28_00450 0.52 -2.5
489,440 + PFR28_00450 0.52 +2.9
489,440 + PFR28_00450 0.52 +0.4
489,440 + PFR28_00450 0.52 +0.7
489,440 + PFR28_00450 0.52 -0.0
489,440 + PFR28_00450 0.52 -1.5
489,440 + PFR28_00450 0.52 +0.3
489,440 + PFR28_00450 0.52 -0.3
489,440 + PFR28_00450 0.52 -0.3
489,441 - PFR28_00450 0.52 -0.8
489,441 - PFR28_00450 0.52 -0.7
489,441 - PFR28_00450 0.52 -0.1
489,441 - PFR28_00450 0.52 -0.6
489,441 - PFR28_00450 0.52 -1.2
489,441 - PFR28_00450 0.52 +0.5
489,441 - PFR28_00450 0.52 +1.3
489,441 - PFR28_00450 0.52 -0.2
489,441 - PFR28_00450 0.52 -0.2
489,441 - PFR28_00450 0.52 -0.9
489,441 - PFR28_00450 0.52 +0.9
489,441 - PFR28_00450 0.52 +0.5
489,441 - PFR28_00450 0.52 -0.5
489,441 - PFR28_00450 0.52 -0.4
489,441 - PFR28_00450 0.52 -0.4
489,444 + PFR28_00450 0.52 +1.9
489,444 + PFR28_00450 0.52 +1.0
489,444 + PFR28_00450 0.52 -0.5
489,444 + PFR28_00450 0.52 -3.2
489,444 + PFR28_00450 0.52 -1.7
489,445 - PFR28_00450 0.52 -0.1
489,445 - PFR28_00450 0.52 +0.5
489,498 + PFR28_00450 0.58 -0.7
489,498 + PFR28_00450 0.58 +0.5
489,498 + PFR28_00450 0.58 +1.7
489,498 + PFR28_00450 0.58 -1.7
489,499 - PFR28_00450 0.58 +0.3
489,499 - PFR28_00450 0.58 +0.9

Or see this region's nucleotide sequence