Strain Fitness in Pseudomonas sp. RS175 around PFR28_00261

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00260 and PFR28_00261 are separated by 59 nucleotidesPFR28_00261 and PFR28_00262 overlap by 6 nucleotides PFR28_00260: PFR28_00260 - hypothetical protein, at 287,162 to 288,364 _00260 PFR28_00261: PFR28_00261 - hypothetical protein, at 288,424 to 288,969 _00261 PFR28_00262: PFR28_00262 - hypothetical protein, at 288,964 to 290,130 _00262 Position (kb) 288 289Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 287.433 kb on - strand, within PFR28_00260at 287.433 kb on - strand, within PFR28_00260at 287.433 kb on - strand, within PFR28_00260at 287.537 kb on + strand, within PFR28_00260at 287.537 kb on + strand, within PFR28_00260at 287.538 kb on - strand, within PFR28_00260at 287.538 kb on - strand, within PFR28_00260at 287.540 kb on + strand, within PFR28_00260at 287.540 kb on + strand, within PFR28_00260at 287.540 kb on + strand, within PFR28_00260at 287.541 kb on - strand, within PFR28_00260at 287.563 kb on - strand, within PFR28_00260at 287.563 kb on - strand, within PFR28_00260at 287.663 kb on + strand, within PFR28_00260at 287.663 kb on + strand, within PFR28_00260at 287.664 kb on - strand, within PFR28_00260at 287.664 kb on - strand, within PFR28_00260at 287.708 kb on + strand, within PFR28_00260at 287.708 kb on + strand, within PFR28_00260at 287.708 kb on + strand, within PFR28_00260at 287.708 kb on + strand, within PFR28_00260at 287.744 kb on - strand, within PFR28_00260at 287.744 kb on - strand, within PFR28_00260at 287.849 kb on + strand, within PFR28_00260at 287.892 kb on - strand, within PFR28_00260at 287.987 kb on + strand, within PFR28_00260at 287.987 kb on + strand, within PFR28_00260at 287.987 kb on + strand, within PFR28_00260at 287.987 kb on + strand, within PFR28_00260at 287.987 kb on + strand, within PFR28_00260at 287.987 kb on + strand, within PFR28_00260at 287.988 kb on - strand, within PFR28_00260at 287.988 kb on - strand, within PFR28_00260at 287.988 kb on - strand, within PFR28_00260at 288.075 kb on - strand, within PFR28_00260at 288.075 kb on - strand, within PFR28_00260at 288.278 kb on + strandat 288.296 kb on + strandat 288.296 kb on + strandat 288.296 kb on + strandat 288.298 kb on + strandat 288.298 kb on + strandat 288.299 kb on - strandat 288.299 kb on - strandat 288.299 kb on - strandat 288.299 kb on - strandat 288.299 kb on - strandat 288.299 kb on - strandat 288.299 kb on - strandat 288.299 kb on - strandat 288.320 kb on - strandat 288.362 kb on + strandat 288.362 kb on + strandat 288.362 kb on + strandat 288.362 kb on + strandat 288.363 kb on - strandat 288.363 kb on - strandat 288.363 kb on - strandat 288.363 kb on - strandat 288.401 kb on - strandat 288.401 kb on - strandat 288.417 kb on + strandat 288.417 kb on + strandat 288.417 kb on + strandat 288.418 kb on - strandat 288.418 kb on - strandat 288.418 kb on - strandat 288.680 kb on - strand, within PFR28_00261at 288.781 kb on + strand, within PFR28_00261at 288.851 kb on + strand, within PFR28_00261at 288.852 kb on - strand, within PFR28_00261at 288.929 kb on - strandat 288.929 kb on - strandat 288.929 kb on - strandat 288.965 kb on + strandat 288.966 kb on - strandat 288.966 kb on - strandat 288.966 kb on - strandat 288.967 kb on + strandat 288.967 kb on + strandat 289.085 kb on + strand, within PFR28_00262at 289.085 kb on + strand, within PFR28_00262at 289.085 kb on + strand, within PFR28_00262at 289.085 kb on + strand, within PFR28_00262at 289.096 kb on + strand, within PFR28_00262at 289.148 kb on + strand, within PFR28_00262at 289.148 kb on + strand, within PFR28_00262at 289.149 kb on - strand, within PFR28_00262at 289.149 kb on - strand, within PFR28_00262at 289.176 kb on - strand, within PFR28_00262at 289.176 kb on - strand, within PFR28_00262at 289.244 kb on - strand, within PFR28_00262at 289.258 kb on + strand, within PFR28_00262at 289.258 kb on + strand, within PFR28_00262at 289.258 kb on + strand, within PFR28_00262at 289.259 kb on - strand, within PFR28_00262at 289.259 kb on - strand, within PFR28_00262at 289.259 kb on - strand, within PFR28_00262at 289.259 kb on - strand, within PFR28_00262at 289.327 kb on + strand, within PFR28_00262at 289.328 kb on - strand, within PFR28_00262at 289.487 kb on + strand, within PFR28_00262at 289.501 kb on + strand, within PFR28_00262at 289.501 kb on + strand, within PFR28_00262at 289.501 kb on + strand, within PFR28_00262at 289.501 kb on + strand, within PFR28_00262at 289.502 kb on - strand, within PFR28_00262at 289.502 kb on - strand, within PFR28_00262at 289.502 kb on - strand, within PFR28_00262at 289.502 kb on - strand, within PFR28_00262at 289.502 kb on - strand, within PFR28_00262at 289.502 kb on - strand, within PFR28_00262at 289.505 kb on + strand, within PFR28_00262at 289.505 kb on + strand, within PFR28_00262at 289.505 kb on + strand, within PFR28_00262at 289.505 kb on + strand, within PFR28_00262at 289.505 kb on + strand, within PFR28_00262at 289.505 kb on + strand, within PFR28_00262at 289.505 kb on + strand, within PFR28_00262at 289.505 kb on + strand, within PFR28_00262at 289.505 kb on + strand, within PFR28_00262at 289.505 kb on + strand, within PFR28_00262at 289.505 kb on + strand, within PFR28_00262at 289.506 kb on - strand, within PFR28_00262at 289.506 kb on - strand, within PFR28_00262at 289.506 kb on - strand, within PFR28_00262at 289.506 kb on - strand, within PFR28_00262at 289.506 kb on - strand, within PFR28_00262at 289.506 kb on - strand, within PFR28_00262at 289.506 kb on - strand, within PFR28_00262at 289.506 kb on - strand, within PFR28_00262at 289.506 kb on - strand, within PFR28_00262at 289.541 kb on + strand, within PFR28_00262at 289.542 kb on - strand, within PFR28_00262at 289.561 kb on + strand, within PFR28_00262at 289.561 kb on + strand, within PFR28_00262at 289.561 kb on + strand, within PFR28_00262at 289.562 kb on - strand, within PFR28_00262at 289.641 kb on + strand, within PFR28_00262at 289.642 kb on - strand, within PFR28_00262at 289.682 kb on + strand, within PFR28_00262at 289.682 kb on + strand, within PFR28_00262at 289.682 kb on + strand, within PFR28_00262at 289.682 kb on + strand, within PFR28_00262at 289.686 kb on + strand, within PFR28_00262at 289.686 kb on + strand, within PFR28_00262at 289.687 kb on - strand, within PFR28_00262at 289.687 kb on - strand, within PFR28_00262at 289.687 kb on - strand, within PFR28_00262at 289.687 kb on - strand, within PFR28_00262at 289.719 kb on + strand, within PFR28_00262at 289.719 kb on + strand, within PFR28_00262at 289.719 kb on + strand, within PFR28_00262at 289.720 kb on - strand, within PFR28_00262at 289.720 kb on - strand, within PFR28_00262

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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287,433 - PFR28_00260 0.23 -0.3
287,433 - PFR28_00260 0.23 -0.2
287,433 - PFR28_00260 0.23 -0.3
287,537 + PFR28_00260 0.31 +0.9
287,537 + PFR28_00260 0.31 -0.5
287,538 - PFR28_00260 0.31 -2.6
287,538 - PFR28_00260 0.31 +0.8
287,540 + PFR28_00260 0.31 +0.2
287,540 + PFR28_00260 0.31 -0.0
287,540 + PFR28_00260 0.31 -1.5
287,541 - PFR28_00260 0.32 -3.8
287,563 - PFR28_00260 0.33 +0.3
287,563 - PFR28_00260 0.33 +1.7
287,663 + PFR28_00260 0.42 -0.1
287,663 + PFR28_00260 0.42 -0.5
287,664 - PFR28_00260 0.42 -0.0
287,664 - PFR28_00260 0.42 +0.3
287,708 + PFR28_00260 0.45 -1.3
287,708 + PFR28_00260 0.45 -0.6
287,708 + PFR28_00260 0.45 +1.3
287,708 + PFR28_00260 0.45 -0.2
287,744 - PFR28_00260 0.48 +0.1
287,744 - PFR28_00260 0.48 +0.7
287,849 + PFR28_00260 0.57 +0.6
287,892 - PFR28_00260 0.61 -0.7
287,987 + PFR28_00260 0.69 -0.9
287,987 + PFR28_00260 0.69 +0.2
287,987 + PFR28_00260 0.69 -0.8
287,987 + PFR28_00260 0.69 -0.7
287,987 + PFR28_00260 0.69 -1.0
287,987 + PFR28_00260 0.69 -0.8
287,988 - PFR28_00260 0.69 +0.5
287,988 - PFR28_00260 0.69 +0.2
287,988 - PFR28_00260 0.69 +1.6
288,075 - PFR28_00260 0.76 -2.4
288,075 - PFR28_00260 0.76 -0.1
288,278 + -0.6
288,296 + +0.6
288,296 + +0.0
288,296 + -0.7
288,298 + -0.3
288,298 + +1.7
288,299 - +0.6
288,299 - -0.7
288,299 - -0.3
288,299 - -0.6
288,299 - -0.8
288,299 - +0.1
288,299 - -1.0
288,299 - -0.7
288,320 - -1.4
288,362 + -0.4
288,362 + +0.2
288,362 + -0.4
288,362 + +0.2
288,363 - -0.1
288,363 - -1.7
288,363 - +0.4
288,363 - +0.3
288,401 - -0.0
288,401 - +0.5
288,417 + -1.7
288,417 + +1.3
288,417 + -1.2
288,418 - +0.7
288,418 - -1.7
288,418 - -0.1
288,680 - PFR28_00261 0.47 -2.0
288,781 + PFR28_00261 0.65 -1.6
288,851 + PFR28_00261 0.78 -0.9
288,852 - PFR28_00261 0.78 +0.0
288,929 - +1.2
288,929 - -0.3
288,929 - +1.2
288,965 + -1.1
288,966 - -0.4
288,966 - -0.1
288,966 - -1.4
288,967 + +0.8
288,967 + +0.3
289,085 + PFR28_00262 0.10 +0.0
289,085 + PFR28_00262 0.10 +0.1
289,085 + PFR28_00262 0.10 -1.7
289,085 + PFR28_00262 0.10 +0.9
289,096 + PFR28_00262 0.11 +1.3
289,148 + PFR28_00262 0.16 +0.7
289,148 + PFR28_00262 0.16 -0.6
289,149 - PFR28_00262 0.16 +0.9
289,149 - PFR28_00262 0.16 -0.1
289,176 - PFR28_00262 0.18 +1.1
289,176 - PFR28_00262 0.18 -0.6
289,244 - PFR28_00262 0.24 -0.4
289,258 + PFR28_00262 0.25 -0.3
289,258 + PFR28_00262 0.25 -2.0
289,258 + PFR28_00262 0.25 -0.3
289,259 - PFR28_00262 0.25 +2.0
289,259 - PFR28_00262 0.25 -0.4
289,259 - PFR28_00262 0.25 -1.8
289,259 - PFR28_00262 0.25 -2.0
289,327 + PFR28_00262 0.31 +0.6
289,328 - PFR28_00262 0.31 -2.7
289,487 + PFR28_00262 0.45 -0.2
289,501 + PFR28_00262 0.46 -0.3
289,501 + PFR28_00262 0.46 +1.7
289,501 + PFR28_00262 0.46 +1.9
289,501 + PFR28_00262 0.46 +0.0
289,502 - PFR28_00262 0.46 -0.4
289,502 - PFR28_00262 0.46 -1.0
289,502 - PFR28_00262 0.46 -0.3
289,502 - PFR28_00262 0.46 +0.1
289,502 - PFR28_00262 0.46 -1.7
289,502 - PFR28_00262 0.46 -0.0
289,505 + PFR28_00262 0.46 +0.1
289,505 + PFR28_00262 0.46 -1.0
289,505 + PFR28_00262 0.46 -0.9
289,505 + PFR28_00262 0.46 +1.3
289,505 + PFR28_00262 0.46 -1.5
289,505 + PFR28_00262 0.46 +0.2
289,505 + PFR28_00262 0.46 +0.4
289,505 + PFR28_00262 0.46 +0.5
289,505 + PFR28_00262 0.46 +0.1
289,505 + PFR28_00262 0.46 +0.5
289,505 + PFR28_00262 0.46 -0.7
289,506 - PFR28_00262 0.46 +0.5
289,506 - PFR28_00262 0.46 +2.0
289,506 - PFR28_00262 0.46 -0.3
289,506 - PFR28_00262 0.46 -1.9
289,506 - PFR28_00262 0.46 -0.4
289,506 - PFR28_00262 0.46 -0.1
289,506 - PFR28_00262 0.46 +0.8
289,506 - PFR28_00262 0.46 -0.0
289,506 - PFR28_00262 0.46 +0.3
289,541 + PFR28_00262 0.49 -2.7
289,542 - PFR28_00262 0.50 +0.7
289,561 + PFR28_00262 0.51 -0.1
289,561 + PFR28_00262 0.51 -0.6
289,561 + PFR28_00262 0.51 -1.7
289,562 - PFR28_00262 0.51 -0.1
289,641 + PFR28_00262 0.58 -1.5
289,642 - PFR28_00262 0.58 -0.7
289,682 + PFR28_00262 0.62 +1.4
289,682 + PFR28_00262 0.62 +0.1
289,682 + PFR28_00262 0.62 +1.0
289,682 + PFR28_00262 0.62 +0.1
289,686 + PFR28_00262 0.62 -0.7
289,686 + PFR28_00262 0.62 -0.7
289,687 - PFR28_00262 0.62 -0.6
289,687 - PFR28_00262 0.62 +0.5
289,687 - PFR28_00262 0.62 -0.5
289,687 - PFR28_00262 0.62 +0.0
289,719 + PFR28_00262 0.65 -0.7
289,719 + PFR28_00262 0.65 -0.1
289,719 + PFR28_00262 0.65 +0.7
289,720 - PFR28_00262 0.65 +0.5
289,720 - PFR28_00262 0.65 +0.2

Or see this region's nucleotide sequence