Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00073 and PFR28_00074 are separated by 319 nucleotides PFR28_00074 and PFR28_00075 are separated by 9 nucleotides
PFR28_00073: PFR28_00073 - Chaperone protein DnaK, at 82,305 to 84,221
_00073
PFR28_00074: PFR28_00074 - Chaperone protein DnaJ, at 84,541 to 85,665
_00074
PFR28_00075: PFR28_00075 - 4-hydroxy-tetrahydrodipicolinate reductase, at 85,675 to 86,481
_00075
Position (kb) 84
85
86 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 84.111 kb on + strand at 84.111 kb on + strand at 84.111 kb on + strand at 84.111 kb on + strand at 84.111 kb on + strand at 84.219 kb on + strand at 84.219 kb on + strand at 84.219 kb on + strand at 84.219 kb on + strand at 84.219 kb on + strand at 84.219 kb on + strand at 84.219 kb on + strand at 84.219 kb on + strand at 84.220 kb on - strand at 84.220 kb on - strand at 84.266 kb on + strand at 84.522 kb on + strand at 84.524 kb on + strand at 84.524 kb on + strand at 84.524 kb on + strand at 84.524 kb on + strand at 84.524 kb on + strand at 84.524 kb on + strand at 84.524 kb on + strand at 84.613 kb on + strand at 84.648 kb on + strand at 84.816 kb on + strand, within PFR28_00074 at 85.171 kb on + strand, within PFR28_00074 at 85.171 kb on + strand, within PFR28_00074 at 85.279 kb on + strand, within PFR28_00074 at 85.279 kb on + strand, within PFR28_00074 at 85.279 kb on + strand, within PFR28_00074 at 85.279 kb on + strand, within PFR28_00074 at 85.279 kb on + strand, within PFR28_00074 at 85.279 kb on + strand, within PFR28_00074 at 85.279 kb on + strand, within PFR28_00074 at 85.279 kb on + strand, within PFR28_00074 at 85.279 kb on + strand, within PFR28_00074 at 85.279 kb on + strand, within PFR28_00074 at 85.279 kb on + strand, within PFR28_00074 at 85.279 kb on + strand, within PFR28_00074 at 86.605 kb on + strand at 86.650 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 84,111 + -2.3 84,111 + +0.6 84,111 + -0.0 84,111 + +0.7 84,111 + -0.4 84,219 + +0.6 84,219 + +0.2 84,219 + +1.8 84,219 + -0.2 84,219 + +0.4 84,219 + +0.2 84,219 + +1.1 84,219 + +0.9 84,220 - +0.3 84,220 - +2.6 84,266 + -0.4 84,522 + +0.6 84,524 + -1.1 84,524 + +1.9 84,524 + +2.9 84,524 + +0.8 84,524 + -0.3 84,524 + +0.7 84,524 + -0.3 84,613 + +1.3 84,648 + +2.1 84,816 + PFR28_00074 0.24 -0.3 85,171 + PFR28_00074 0.56 -0.5 85,171 + PFR28_00074 0.56 -1.8 85,279 + PFR28_00074 0.66 +0.3 85,279 + PFR28_00074 0.66 -1.7 85,279 + PFR28_00074 0.66 -2.0 85,279 + PFR28_00074 0.66 -1.8 85,279 + PFR28_00074 0.66 -0.2 85,279 + PFR28_00074 0.66 -2.3 85,279 + PFR28_00074 0.66 -1.2 85,279 + PFR28_00074 0.66 -1.3 85,279 + PFR28_00074 0.66 +1.3 85,279 + PFR28_00074 0.66 +0.3 85,279 + PFR28_00074 0.66 -0.0 85,279 + PFR28_00074 0.66 -0.2 86,605 + +0.2 86,650 + -0.3
Or see this region's nucleotide sequence