Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00032 and PFR28_00033 are separated by 690 nucleotides PFR28_00033 and PFR28_00034 are separated by 123 nucleotides
PFR28_00032: PFR28_00032 - Methyl-accepting chemotaxis protein McpS, at 39,148 to 41,067
_00032
PFR28_00033: PFR28_00033 - hypothetical protein, at 41,758 to 42,042
_00033
PFR28_00034: PFR28_00034 - hypothetical protein, at 42,166 to 43,674
_00034
Position (kb) 41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 40.831 kb on + strand, within PFR28_00032 at 40.831 kb on + strand, within PFR28_00032 at 40.832 kb on - strand, within PFR28_00032 at 40.871 kb on + strand, within PFR28_00032 at 40.871 kb on + strand, within PFR28_00032 at 40.871 kb on + strand, within PFR28_00032 at 40.871 kb on + strand, within PFR28_00032 at 40.871 kb on + strand, within PFR28_00032 at 40.871 kb on + strand, within PFR28_00032 at 40.871 kb on + strand, within PFR28_00032 at 40.871 kb on + strand, within PFR28_00032 at 40.872 kb on - strand, within PFR28_00032 at 40.872 kb on - strand, within PFR28_00032 at 40.872 kb on - strand, within PFR28_00032 at 40.872 kb on - strand, within PFR28_00032 at 40.872 kb on - strand, within PFR28_00032 at 41.005 kb on + strand at 41.006 kb on - strand at 41.043 kb on + strand at 41.043 kb on + strand at 41.061 kb on + strand at 41.061 kb on + strand at 41.061 kb on + strand at 41.061 kb on + strand at 41.061 kb on + strand at 41.061 kb on + strand at 41.061 kb on + strand at 41.061 kb on + strand at 41.061 kb on + strand at 41.061 kb on + strand at 41.061 kb on + strand at 41.061 kb on + strand at 41.062 kb on - strand at 41.062 kb on - strand at 41.062 kb on - strand at 41.062 kb on - strand at 41.062 kb on - strand at 41.062 kb on - strand at 41.062 kb on - strand at 41.062 kb on - strand at 41.128 kb on + strand at 41.129 kb on - strand at 41.129 kb on - strand at 41.319 kb on + strand at 41.319 kb on + strand at 41.319 kb on + strand at 41.319 kb on + strand at 41.326 kb on + strand at 41.327 kb on - strand at 41.351 kb on + strand at 41.351 kb on + strand at 41.351 kb on + strand at 41.351 kb on + strand at 41.352 kb on - strand at 41.352 kb on - strand at 41.356 kb on + strand at 41.357 kb on - strand at 41.357 kb on - strand at 41.519 kb on + strand at 41.519 kb on + strand at 41.519 kb on + strand at 41.519 kb on + strand at 41.519 kb on + strand at 41.519 kb on + strand at 41.520 kb on - strand at 41.520 kb on - strand at 41.557 kb on + strand at 41.613 kb on - strand at 41.628 kb on - strand at 41.671 kb on - strand at 41.671 kb on - strand at 41.742 kb on + strand at 41.742 kb on + strand at 41.742 kb on + strand at 41.742 kb on + strand at 41.742 kb on + strand at 41.742 kb on + strand at 41.742 kb on + strand at 41.742 kb on + strand at 41.743 kb on - strand at 41.743 kb on - strand at 41.743 kb on - strand at 41.743 kb on - strand at 41.743 kb on - strand at 41.743 kb on - strand at 41.747 kb on + strand at 41.748 kb on - strand at 41.753 kb on + strand at 41.753 kb on + strand at 41.754 kb on - strand at 41.845 kb on + strand, within PFR28_00033 at 41.904 kb on + strand, within PFR28_00033 at 41.904 kb on + strand, within PFR28_00033 at 42.097 kb on - strand at 42.097 kb on - strand at 42.158 kb on + strand at 42.159 kb on - strand at 42.331 kb on + strand, within PFR28_00034 at 42.331 kb on + strand, within PFR28_00034 at 42.331 kb on + strand, within PFR28_00034 at 42.332 kb on - strand, within PFR28_00034 at 42.332 kb on - strand, within PFR28_00034 at 42.332 kb on - strand, within PFR28_00034 at 42.377 kb on + strand, within PFR28_00034 at 42.377 kb on + strand, within PFR28_00034 at 42.377 kb on + strand, within PFR28_00034 at 42.378 kb on - strand, within PFR28_00034 at 42.658 kb on + strand, within PFR28_00034 at 43.024 kb on + strand, within PFR28_00034 at 43.025 kb on - strand, within PFR28_00034 at 43.025 kb on - strand, within PFR28_00034
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 40,831 + PFR28_00032 0.88 -0.5 40,831 + PFR28_00032 0.88 +1.7 40,832 - PFR28_00032 0.88 +0.1 40,871 + PFR28_00032 0.90 +0.2 40,871 + PFR28_00032 0.90 -0.1 40,871 + PFR28_00032 0.90 +0.0 40,871 + PFR28_00032 0.90 -0.2 40,871 + PFR28_00032 0.90 +1.3 40,871 + PFR28_00032 0.90 -0.1 40,871 + PFR28_00032 0.90 -0.1 40,871 + PFR28_00032 0.90 +0.1 40,872 - PFR28_00032 0.90 -0.3 40,872 - PFR28_00032 0.90 -0.6 40,872 - PFR28_00032 0.90 -1.0 40,872 - PFR28_00032 0.90 -1.7 40,872 - PFR28_00032 0.90 +0.2 41,005 + -0.8 41,006 - -0.5 41,043 + +0.1 41,043 + +1.4 41,061 + +0.2 41,061 + +1.0 41,061 + +1.4 41,061 + +0.7 41,061 + +0.3 41,061 + +1.7 41,061 + -0.3 41,061 + +0.9 41,061 + -1.7 41,061 + -0.2 41,061 + -0.7 41,061 + -0.3 41,062 - +0.2 41,062 - +1.0 41,062 - -2.3 41,062 - +0.2 41,062 - +0.5 41,062 - -0.9 41,062 - -0.4 41,062 - -0.0 41,128 + +1.0 41,129 - -0.1 41,129 - +0.6 41,319 + -1.1 41,319 + +0.2 41,319 + +0.2 41,319 + +0.3 41,326 + -2.5 41,327 - +0.5 41,351 + +0.0 41,351 + +0.7 41,351 + -0.4 41,351 + +0.6 41,352 - -0.9 41,352 - +0.4 41,356 + +0.7 41,357 - +0.0 41,357 - +0.1 41,519 + +0.4 41,519 + -0.0 41,519 + -0.3 41,519 + -0.9 41,519 + -1.0 41,519 + -0.0 41,520 - -3.4 41,520 - -0.6 41,557 + +0.0 41,613 - +2.1 41,628 - -0.0 41,671 - -0.7 41,671 - +0.2 41,742 + +0.5 41,742 + -0.6 41,742 + +1.1 41,742 + +1.8 41,742 + +0.6 41,742 + +0.1 41,742 + +0.2 41,742 + -0.4 41,743 - -1.8 41,743 - +1.3 41,743 - +0.6 41,743 - -1.5 41,743 - -0.5 41,743 - +0.1 41,747 + +0.7 41,748 - -0.2 41,753 + +0.9 41,753 + -0.7 41,754 - +0.6 41,845 + PFR28_00033 0.31 -0.6 41,904 + PFR28_00033 0.51 -3.0 41,904 + PFR28_00033 0.51 -0.7 42,097 - +2.9 42,097 - +1.1 42,158 + -0.2 42,159 - -0.1 42,331 + PFR28_00034 0.11 +0.3 42,331 + PFR28_00034 0.11 +0.1 42,331 + PFR28_00034 0.11 -0.9 42,332 - PFR28_00034 0.11 -0.2 42,332 - PFR28_00034 0.11 +1.7 42,332 - PFR28_00034 0.11 +4.3 42,377 + PFR28_00034 0.14 +0.0 42,377 + PFR28_00034 0.14 +0.2 42,377 + PFR28_00034 0.14 +0.5 42,378 - PFR28_00034 0.14 +0.2 42,658 + PFR28_00034 0.33 -0.1 43,024 + PFR28_00034 0.57 -0.0 43,025 - PFR28_00034 0.57 +0.2 43,025 - PFR28_00034 0.57 -1.3
Or see this region's nucleotide sequence