Strain Fitness in Bosea sp. OAE506 around ABIE41_RS17820

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS17815 and ABIE41_RS17820 are separated by 131 nucleotidesABIE41_RS17820 and ABIE41_RS17825 are separated by 145 nucleotidesABIE41_RS17825 and ABIE41_RS17830 are separated by 178 nucleotides ABIE41_RS17815: ABIE41_RS17815 - SDR family NAD(P)-dependent oxidoreductase, at 3,670,355 to 3,671,095 _RS17815 ABIE41_RS17820: ABIE41_RS17820 - ribosome biogenesis GTPase Der, at 3,671,227 to 3,672,648 _RS17820 ABIE41_RS17825: ABIE41_RS17825 - tetratricopeptide repeat protein, at 3,672,794 to 3,673,456 _RS17825 ABIE41_RS17830: ABIE41_RS17830 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 3,673,635 to 3,674,732 _RS17830 Position (kb) 3671 3672 3673Strain fitness (log2 ratio) -1 0 1at 3670.770 kb on + strand, within ABIE41_RS17815at 3670.823 kb on + strand, within ABIE41_RS17815at 3670.823 kb on + strand, within ABIE41_RS17815at 3670.824 kb on - strand, within ABIE41_RS17815at 3670.866 kb on - strand, within ABIE41_RS17815at 3672.789 kb on - strandat 3672.838 kb on - strandat 3672.890 kb on - strand, within ABIE41_RS17825at 3672.890 kb on - strand, within ABIE41_RS17825at 3673.387 kb on - strand, within ABIE41_RS17825

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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3,670,770 + ABIE41_RS17815 0.56 +0.4
3,670,823 + ABIE41_RS17815 0.63 -0.4
3,670,823 + ABIE41_RS17815 0.63 +0.8
3,670,824 - ABIE41_RS17815 0.63 +0.1
3,670,866 - ABIE41_RS17815 0.69 +0.1
3,672,789 - +1.1
3,672,838 - -1.7
3,672,890 - ABIE41_RS17825 0.14 -1.3
3,672,890 - ABIE41_RS17825 0.14 -0.1
3,673,387 - ABIE41_RS17825 0.89 -0.3

Or see this region's nucleotide sequence