Strain Fitness in Bosea sp. OAE506 around ABIE41_RS17200

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS17190 and ABIE41_RS17195 are separated by 74 nucleotidesABIE41_RS17195 and ABIE41_RS17200 are separated by 74 nucleotidesABIE41_RS17200 and ABIE41_RS17205 are separated by 287 nucleotides ABIE41_RS17190: ABIE41_RS17190 - tripartite tricarboxylate transporter substrate-binding protein, at 3,541,769 to 3,542,746 _RS17190 ABIE41_RS17195: ABIE41_RS17195 - Holliday junction resolvase RuvX, at 3,542,821 to 3,543,327 _RS17195 ABIE41_RS17200: ABIE41_RS17200 - hypothetical protein, at 3,543,402 to 3,543,782 _RS17200 ABIE41_RS17205: ABIE41_RS17205 - AEC family transporter, at 3,544,070 to 3,544,984 _RS17205 Position (kb) 3543 3544Strain fitness (log2 ratio) -1 0 1 2at 3542.525 kb on + strand, within ABIE41_RS17190at 3543.439 kb on + strandat 3543.439 kb on + strandat 3543.439 kb on + strandat 3543.439 kb on + strandat 3543.439 kb on + strandat 3543.440 kb on - strand, within ABIE41_RS17200at 3543.440 kb on - strand, within ABIE41_RS17200at 3543.442 kb on + strand, within ABIE41_RS17200at 3543.469 kb on + strand, within ABIE41_RS17200at 3543.469 kb on + strand, within ABIE41_RS17200at 3543.488 kb on - strand, within ABIE41_RS17200at 3543.502 kb on + strand, within ABIE41_RS17200at 3543.502 kb on + strand, within ABIE41_RS17200at 3543.503 kb on - strand, within ABIE41_RS17200at 3543.503 kb on - strand, within ABIE41_RS17200at 3543.505 kb on + strand, within ABIE41_RS17200at 3543.505 kb on + strand, within ABIE41_RS17200at 3543.517 kb on + strand, within ABIE41_RS17200at 3543.517 kb on + strand, within ABIE41_RS17200at 3543.518 kb on - strand, within ABIE41_RS17200at 3543.643 kb on + strand, within ABIE41_RS17200at 3543.644 kb on - strand, within ABIE41_RS17200at 3543.730 kb on - strand, within ABIE41_RS17200at 3544.178 kb on + strand, within ABIE41_RS17205at 3544.178 kb on + strand, within ABIE41_RS17205at 3544.178 kb on + strand, within ABIE41_RS17205at 3544.179 kb on - strand, within ABIE41_RS17205at 3544.179 kb on - strand, within ABIE41_RS17205at 3544.179 kb on - strand, within ABIE41_RS17205at 3544.179 kb on - strand, within ABIE41_RS17205at 3544.179 kb on - strand, within ABIE41_RS17205at 3544.179 kb on - strand, within ABIE41_RS17205at 3544.640 kb on + strand, within ABIE41_RS17205at 3544.640 kb on + strand, within ABIE41_RS17205at 3544.640 kb on + strand, within ABIE41_RS17205at 3544.640 kb on + strand, within ABIE41_RS17205at 3544.641 kb on - strand, within ABIE41_RS17205at 3544.641 kb on - strand, within ABIE41_RS17205

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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3,542,525 + ABIE41_RS17190 0.77 -0.1
3,543,439 + -0.2
3,543,439 + +0.3
3,543,439 + +0.1
3,543,439 + +0.9
3,543,439 + -0.3
3,543,440 - ABIE41_RS17200 0.10 +0.1
3,543,440 - ABIE41_RS17200 0.10 +1.7
3,543,442 + ABIE41_RS17200 0.10 +0.2
3,543,469 + ABIE41_RS17200 0.18 +0.4
3,543,469 + ABIE41_RS17200 0.18 +1.0
3,543,488 - ABIE41_RS17200 0.23 -0.1
3,543,502 + ABIE41_RS17200 0.26 +1.7
3,543,502 + ABIE41_RS17200 0.26 +0.2
3,543,503 - ABIE41_RS17200 0.27 -0.1
3,543,503 - ABIE41_RS17200 0.27 +0.7
3,543,505 + ABIE41_RS17200 0.27 -0.1
3,543,505 + ABIE41_RS17200 0.27 +1.7
3,543,517 + ABIE41_RS17200 0.30 -0.3
3,543,517 + ABIE41_RS17200 0.30 +0.8
3,543,518 - ABIE41_RS17200 0.30 +1.9
3,543,643 + ABIE41_RS17200 0.63 +2.1
3,543,644 - ABIE41_RS17200 0.64 +0.2
3,543,730 - ABIE41_RS17200 0.86 -0.9
3,544,178 + ABIE41_RS17205 0.12 +0.7
3,544,178 + ABIE41_RS17205 0.12 +0.2
3,544,178 + ABIE41_RS17205 0.12 -0.0
3,544,179 - ABIE41_RS17205 0.12 +0.4
3,544,179 - ABIE41_RS17205 0.12 -0.0
3,544,179 - ABIE41_RS17205 0.12 -0.3
3,544,179 - ABIE41_RS17205 0.12 +0.1
3,544,179 - ABIE41_RS17205 0.12 -0.5
3,544,179 - ABIE41_RS17205 0.12 -0.7
3,544,640 + ABIE41_RS17205 0.62 -0.4
3,544,640 + ABIE41_RS17205 0.62 -0.1
3,544,640 + ABIE41_RS17205 0.62 -0.0
3,544,640 + ABIE41_RS17205 0.62 -0.1
3,544,641 - ABIE41_RS17205 0.62 -0.1
3,544,641 - ABIE41_RS17205 0.62 +0.5

Or see this region's nucleotide sequence