Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS17190 and ABIE41_RS17195 are separated by 74 nucleotides ABIE41_RS17195 and ABIE41_RS17200 are separated by 74 nucleotides ABIE41_RS17200 and ABIE41_RS17205 are separated by 287 nucleotides
ABIE41_RS17190: ABIE41_RS17190 - tripartite tricarboxylate transporter substrate-binding protein, at 3,541,769 to 3,542,746
_RS17190
ABIE41_RS17195: ABIE41_RS17195 - Holliday junction resolvase RuvX, at 3,542,821 to 3,543,327
_RS17195
ABIE41_RS17200: ABIE41_RS17200 - hypothetical protein, at 3,543,402 to 3,543,782
_RS17200
ABIE41_RS17205: ABIE41_RS17205 - AEC family transporter, at 3,544,070 to 3,544,984
_RS17205
Position (kb)
3543
3544 Strain fitness (log2 ratio)
-1
0
1
2 at 3542.525 kb on + strand, within ABIE41_RS17190 at 3543.439 kb on + strand at 3543.439 kb on + strand at 3543.439 kb on + strand at 3543.439 kb on + strand at 3543.439 kb on + strand at 3543.440 kb on - strand, within ABIE41_RS17200 at 3543.440 kb on - strand, within ABIE41_RS17200 at 3543.442 kb on + strand, within ABIE41_RS17200 at 3543.469 kb on + strand, within ABIE41_RS17200 at 3543.469 kb on + strand, within ABIE41_RS17200 at 3543.488 kb on - strand, within ABIE41_RS17200 at 3543.502 kb on + strand, within ABIE41_RS17200 at 3543.502 kb on + strand, within ABIE41_RS17200 at 3543.503 kb on - strand, within ABIE41_RS17200 at 3543.503 kb on - strand, within ABIE41_RS17200 at 3543.505 kb on + strand, within ABIE41_RS17200 at 3543.505 kb on + strand, within ABIE41_RS17200 at 3543.517 kb on + strand, within ABIE41_RS17200 at 3543.517 kb on + strand, within ABIE41_RS17200 at 3543.518 kb on - strand, within ABIE41_RS17200 at 3543.643 kb on + strand, within ABIE41_RS17200 at 3543.644 kb on - strand, within ABIE41_RS17200 at 3543.730 kb on - strand, within ABIE41_RS17200 at 3544.178 kb on + strand, within ABIE41_RS17205 at 3544.178 kb on + strand, within ABIE41_RS17205 at 3544.178 kb on + strand, within ABIE41_RS17205 at 3544.179 kb on - strand, within ABIE41_RS17205 at 3544.179 kb on - strand, within ABIE41_RS17205 at 3544.179 kb on - strand, within ABIE41_RS17205 at 3544.179 kb on - strand, within ABIE41_RS17205 at 3544.179 kb on - strand, within ABIE41_RS17205 at 3544.179 kb on - strand, within ABIE41_RS17205 at 3544.640 kb on + strand, within ABIE41_RS17205 at 3544.640 kb on + strand, within ABIE41_RS17205 at 3544.640 kb on + strand, within ABIE41_RS17205 at 3544.640 kb on + strand, within ABIE41_RS17205 at 3544.641 kb on - strand, within ABIE41_RS17205 at 3544.641 kb on - strand, within ABIE41_RS17205
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 3,542,525 + ABIE41_RS17190 0.77 -0.1 3,543,439 + -0.2 3,543,439 + +0.3 3,543,439 + +0.1 3,543,439 + +0.9 3,543,439 + -0.3 3,543,440 - ABIE41_RS17200 0.10 +0.1 3,543,440 - ABIE41_RS17200 0.10 +1.7 3,543,442 + ABIE41_RS17200 0.10 +0.2 3,543,469 + ABIE41_RS17200 0.18 +0.4 3,543,469 + ABIE41_RS17200 0.18 +1.0 3,543,488 - ABIE41_RS17200 0.23 -0.1 3,543,502 + ABIE41_RS17200 0.26 +1.7 3,543,502 + ABIE41_RS17200 0.26 +0.2 3,543,503 - ABIE41_RS17200 0.27 -0.1 3,543,503 - ABIE41_RS17200 0.27 +0.7 3,543,505 + ABIE41_RS17200 0.27 -0.1 3,543,505 + ABIE41_RS17200 0.27 +1.7 3,543,517 + ABIE41_RS17200 0.30 -0.3 3,543,517 + ABIE41_RS17200 0.30 +0.8 3,543,518 - ABIE41_RS17200 0.30 +1.9 3,543,643 + ABIE41_RS17200 0.63 +2.1 3,543,644 - ABIE41_RS17200 0.64 +0.2 3,543,730 - ABIE41_RS17200 0.86 -0.9 3,544,178 + ABIE41_RS17205 0.12 +0.7 3,544,178 + ABIE41_RS17205 0.12 +0.2 3,544,178 + ABIE41_RS17205 0.12 -0.0 3,544,179 - ABIE41_RS17205 0.12 +0.4 3,544,179 - ABIE41_RS17205 0.12 -0.0 3,544,179 - ABIE41_RS17205 0.12 -0.3 3,544,179 - ABIE41_RS17205 0.12 +0.1 3,544,179 - ABIE41_RS17205 0.12 -0.5 3,544,179 - ABIE41_RS17205 0.12 -0.7 3,544,640 + ABIE41_RS17205 0.62 -0.4 3,544,640 + ABIE41_RS17205 0.62 -0.1 3,544,640 + ABIE41_RS17205 0.62 -0.0 3,544,640 + ABIE41_RS17205 0.62 -0.1 3,544,641 - ABIE41_RS17205 0.62 -0.1 3,544,641 - ABIE41_RS17205 0.62 +0.5
Or see this region's nucleotide sequence