Strain Fitness in Bosea sp. OAE506 around ABIE41_RS14910

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS14895 and ABIE41_RS14900 are separated by 190 nucleotidesABIE41_RS14900 and ABIE41_RS14905 overlap by 1 nucleotidesABIE41_RS14905 and ABIE41_RS14910 are separated by 155 nucleotidesABIE41_RS14910 and ABIE41_RS14915 are separated by 36 nucleotides ABIE41_RS14895: ABIE41_RS14895 - phasin family protein, at 3,043,334 to 3,043,675 _RS14895 ABIE41_RS14900: ABIE41_RS14900 - AbrB/MazE/SpoVT family DNA-binding domain-containing protein, at 3,043,866 to 3,044,078 _RS14900 ABIE41_RS14905: ABIE41_RS14905 - type II toxin-antitoxin system VapC family toxin, at 3,044,078 to 3,044,461 _RS14905 ABIE41_RS14910: ABIE41_RS14910 - altronate dehydratase family protein, at 3,044,617 to 3,046,146 _RS14910 ABIE41_RS14915: ABIE41_RS14915 - VOC family protein, at 3,046,183 to 3,047,157 _RS14915 Position (kb) 3044 3045 3046 3047Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3043.627 kb on + strand, within ABIE41_RS14895at 3043.725 kb on - strandat 3043.828 kb on - strandat 3044.361 kb on - strand, within ABIE41_RS14905at 3044.435 kb on + strandat 3044.435 kb on + strandat 3044.436 kb on - strandat 3044.436 kb on - strandat 3044.459 kb on + strandat 3044.459 kb on + strandat 3044.643 kb on + strandat 3044.995 kb on + strand, within ABIE41_RS14910at 3044.995 kb on + strand, within ABIE41_RS14910at 3044.995 kb on + strand, within ABIE41_RS14910at 3044.995 kb on + strand, within ABIE41_RS14910at 3044.996 kb on - strand, within ABIE41_RS14910at 3044.996 kb on - strand, within ABIE41_RS14910at 3045.142 kb on + strand, within ABIE41_RS14910at 3045.142 kb on + strand, within ABIE41_RS14910at 3045.143 kb on - strand, within ABIE41_RS14910at 3045.144 kb on + strand, within ABIE41_RS14910at 3045.144 kb on + strand, within ABIE41_RS14910at 3045.144 kb on + strand, within ABIE41_RS14910at 3045.145 kb on - strand, within ABIE41_RS14910at 3045.145 kb on - strand, within ABIE41_RS14910at 3045.187 kb on + strand, within ABIE41_RS14910at 3045.188 kb on - strand, within ABIE41_RS14910at 3045.271 kb on + strand, within ABIE41_RS14910at 3045.271 kb on + strand, within ABIE41_RS14910at 3045.271 kb on + strand, within ABIE41_RS14910at 3045.272 kb on - strand, within ABIE41_RS14910at 3045.553 kb on + strand, within ABIE41_RS14910at 3045.554 kb on - strand, within ABIE41_RS14910at 3045.554 kb on - strand, within ABIE41_RS14910at 3045.554 kb on - strand, within ABIE41_RS14910at 3045.554 kb on - strand, within ABIE41_RS14910at 3045.640 kb on + strand, within ABIE41_RS14910at 3045.641 kb on - strand, within ABIE41_RS14910at 3045.641 kb on - strand, within ABIE41_RS14910at 3045.641 kb on - strand, within ABIE41_RS14910at 3045.641 kb on - strand, within ABIE41_RS14910at 3045.641 kb on - strand, within ABIE41_RS14910at 3045.641 kb on - strand, within ABIE41_RS14910at 3045.772 kb on + strand, within ABIE41_RS14910at 3045.772 kb on + strand, within ABIE41_RS14910at 3045.779 kb on - strand, within ABIE41_RS14910at 3045.811 kb on + strand, within ABIE41_RS14910at 3045.812 kb on - strand, within ABIE41_RS14910at 3045.813 kb on + strand, within ABIE41_RS14910at 3045.819 kb on + strand, within ABIE41_RS14910at 3045.820 kb on - strand, within ABIE41_RS14910at 3045.830 kb on - strand, within ABIE41_RS14910at 3045.907 kb on + strand, within ABIE41_RS14910at 3045.958 kb on + strand, within ABIE41_RS14910at 3045.958 kb on + strand, within ABIE41_RS14910at 3045.958 kb on + strand, within ABIE41_RS14910at 3045.958 kb on + strand, within ABIE41_RS14910at 3045.958 kb on + strand, within ABIE41_RS14910at 3045.959 kb on - strand, within ABIE41_RS14910at 3046.406 kb on + strand, within ABIE41_RS14915at 3046.406 kb on + strand, within ABIE41_RS14915at 3046.476 kb on - strand, within ABIE41_RS14915at 3046.476 kb on - strand, within ABIE41_RS14915at 3046.667 kb on + strand, within ABIE41_RS14915at 3046.667 kb on + strand, within ABIE41_RS14915at 3046.667 kb on + strand, within ABIE41_RS14915at 3046.668 kb on - strand, within ABIE41_RS14915at 3046.955 kb on + strand, within ABIE41_RS14915at 3046.955 kb on + strand, within ABIE41_RS14915

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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3,043,627 + ABIE41_RS14895 0.86 -0.1
3,043,725 - +0.8
3,043,828 - +0.9
3,044,361 - ABIE41_RS14905 0.74 -1.0
3,044,435 + +0.1
3,044,435 + -0.3
3,044,436 - +0.1
3,044,436 - +0.6
3,044,459 + -0.4
3,044,459 + -3.7
3,044,643 + +0.7
3,044,995 + ABIE41_RS14910 0.25 -0.1
3,044,995 + ABIE41_RS14910 0.25 +0.6
3,044,995 + ABIE41_RS14910 0.25 -0.7
3,044,995 + ABIE41_RS14910 0.25 +0.1
3,044,996 - ABIE41_RS14910 0.25 +0.5
3,044,996 - ABIE41_RS14910 0.25 -0.3
3,045,142 + ABIE41_RS14910 0.34 +0.6
3,045,142 + ABIE41_RS14910 0.34 -0.9
3,045,143 - ABIE41_RS14910 0.34 -0.1
3,045,144 + ABIE41_RS14910 0.34 -0.3
3,045,144 + ABIE41_RS14910 0.34 -0.3
3,045,144 + ABIE41_RS14910 0.34 +0.5
3,045,145 - ABIE41_RS14910 0.35 +0.2
3,045,145 - ABIE41_RS14910 0.35 -0.2
3,045,187 + ABIE41_RS14910 0.37 +0.3
3,045,188 - ABIE41_RS14910 0.37 +0.2
3,045,271 + ABIE41_RS14910 0.43 +1.2
3,045,271 + ABIE41_RS14910 0.43 +0.1
3,045,271 + ABIE41_RS14910 0.43 +0.1
3,045,272 - ABIE41_RS14910 0.43 -0.5
3,045,553 + ABIE41_RS14910 0.61 -0.3
3,045,554 - ABIE41_RS14910 0.61 +0.4
3,045,554 - ABIE41_RS14910 0.61 -0.4
3,045,554 - ABIE41_RS14910 0.61 +0.3
3,045,554 - ABIE41_RS14910 0.61 -0.6
3,045,640 + ABIE41_RS14910 0.67 +0.7
3,045,641 - ABIE41_RS14910 0.67 -0.3
3,045,641 - ABIE41_RS14910 0.67 -1.2
3,045,641 - ABIE41_RS14910 0.67 +0.0
3,045,641 - ABIE41_RS14910 0.67 -0.3
3,045,641 - ABIE41_RS14910 0.67 -0.0
3,045,641 - ABIE41_RS14910 0.67 +0.0
3,045,772 + ABIE41_RS14910 0.75 +0.1
3,045,772 + ABIE41_RS14910 0.75 +0.2
3,045,779 - ABIE41_RS14910 0.76 -0.6
3,045,811 + ABIE41_RS14910 0.78 -0.4
3,045,812 - ABIE41_RS14910 0.78 +1.1
3,045,813 + ABIE41_RS14910 0.78 -0.0
3,045,819 + ABIE41_RS14910 0.79 -0.9
3,045,820 - ABIE41_RS14910 0.79 -0.7
3,045,830 - ABIE41_RS14910 0.79 +2.1
3,045,907 + ABIE41_RS14910 0.84 +0.7
3,045,958 + ABIE41_RS14910 0.88 -0.8
3,045,958 + ABIE41_RS14910 0.88 -0.3
3,045,958 + ABIE41_RS14910 0.88 +0.2
3,045,958 + ABIE41_RS14910 0.88 -0.2
3,045,958 + ABIE41_RS14910 0.88 -0.1
3,045,959 - ABIE41_RS14910 0.88 -0.3
3,046,406 + ABIE41_RS14915 0.23 +1.3
3,046,406 + ABIE41_RS14915 0.23 +0.1
3,046,476 - ABIE41_RS14915 0.30 +0.1
3,046,476 - ABIE41_RS14915 0.30 +0.9
3,046,667 + ABIE41_RS14915 0.50 +0.3
3,046,667 + ABIE41_RS14915 0.50 -0.1
3,046,667 + ABIE41_RS14915 0.50 +0.1
3,046,668 - ABIE41_RS14915 0.50 +1.7
3,046,955 + ABIE41_RS14915 0.79 -0.1
3,046,955 + ABIE41_RS14915 0.79 +1.0

Or see this region's nucleotide sequence