Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS14895 and ABIE41_RS14900 are separated by 190 nucleotides ABIE41_RS14900 and ABIE41_RS14905 overlap by 1 nucleotides ABIE41_RS14905 and ABIE41_RS14910 are separated by 155 nucleotides
ABIE41_RS14895: ABIE41_RS14895 - phasin family protein, at 3,043,334 to 3,043,675
_RS14895
ABIE41_RS14900: ABIE41_RS14900 - AbrB/MazE/SpoVT family DNA-binding domain-containing protein, at 3,043,866 to 3,044,078
_RS14900
ABIE41_RS14905: ABIE41_RS14905 - type II toxin-antitoxin system VapC family toxin, at 3,044,078 to 3,044,461
_RS14905
ABIE41_RS14910: ABIE41_RS14910 - altronate dehydratase family protein, at 3,044,617 to 3,046,146
_RS14910
Position (kb)
3044
3045 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3043.086 kb on - strand at 3043.107 kb on + strand at 3043.108 kb on - strand at 3043.145 kb on - strand at 3043.544 kb on + strand, within ABIE41_RS14895 at 3043.545 kb on - strand, within ABIE41_RS14895 at 3043.601 kb on + strand, within ABIE41_RS14895 at 3043.602 kb on - strand, within ABIE41_RS14895 at 3043.627 kb on + strand, within ABIE41_RS14895 at 3043.725 kb on - strand at 3043.828 kb on - strand at 3044.361 kb on - strand, within ABIE41_RS14905 at 3044.435 kb on + strand at 3044.435 kb on + strand at 3044.436 kb on - strand at 3044.436 kb on - strand at 3044.459 kb on + strand at 3044.459 kb on + strand at 3044.643 kb on + strand at 3044.995 kb on + strand, within ABIE41_RS14910 at 3044.995 kb on + strand, within ABIE41_RS14910 at 3044.995 kb on + strand, within ABIE41_RS14910 at 3044.995 kb on + strand, within ABIE41_RS14910 at 3044.996 kb on - strand, within ABIE41_RS14910 at 3044.996 kb on - strand, within ABIE41_RS14910 at 3045.142 kb on + strand, within ABIE41_RS14910 at 3045.142 kb on + strand, within ABIE41_RS14910 at 3045.143 kb on - strand, within ABIE41_RS14910 at 3045.144 kb on + strand, within ABIE41_RS14910 at 3045.144 kb on + strand, within ABIE41_RS14910 at 3045.144 kb on + strand, within ABIE41_RS14910 at 3045.145 kb on - strand, within ABIE41_RS14910 at 3045.145 kb on - strand, within ABIE41_RS14910 at 3045.187 kb on + strand, within ABIE41_RS14910 at 3045.188 kb on - strand, within ABIE41_RS14910 at 3045.271 kb on + strand, within ABIE41_RS14910 at 3045.271 kb on + strand, within ABIE41_RS14910 at 3045.271 kb on + strand, within ABIE41_RS14910 at 3045.272 kb on - strand, within ABIE41_RS14910
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 3,043,086 - +1.7 3,043,107 + -0.7 3,043,108 - +1.7 3,043,145 - -0.2 3,043,544 + ABIE41_RS14895 0.61 +0.8 3,043,545 - ABIE41_RS14895 0.62 -0.2 3,043,601 + ABIE41_RS14895 0.78 -0.0 3,043,602 - ABIE41_RS14895 0.78 +1.7 3,043,627 + ABIE41_RS14895 0.86 -0.1 3,043,725 - +0.8 3,043,828 - +0.9 3,044,361 - ABIE41_RS14905 0.74 -1.0 3,044,435 + +0.1 3,044,435 + -0.3 3,044,436 - +0.1 3,044,436 - +0.6 3,044,459 + -0.4 3,044,459 + -3.7 3,044,643 + +0.7 3,044,995 + ABIE41_RS14910 0.25 -0.1 3,044,995 + ABIE41_RS14910 0.25 +0.6 3,044,995 + ABIE41_RS14910 0.25 -0.7 3,044,995 + ABIE41_RS14910 0.25 +0.1 3,044,996 - ABIE41_RS14910 0.25 +0.5 3,044,996 - ABIE41_RS14910 0.25 -0.3 3,045,142 + ABIE41_RS14910 0.34 +0.6 3,045,142 + ABIE41_RS14910 0.34 -0.9 3,045,143 - ABIE41_RS14910 0.34 -0.1 3,045,144 + ABIE41_RS14910 0.34 -0.3 3,045,144 + ABIE41_RS14910 0.34 -0.3 3,045,144 + ABIE41_RS14910 0.34 +0.5 3,045,145 - ABIE41_RS14910 0.35 +0.2 3,045,145 - ABIE41_RS14910 0.35 -0.2 3,045,187 + ABIE41_RS14910 0.37 +0.3 3,045,188 - ABIE41_RS14910 0.37 +0.2 3,045,271 + ABIE41_RS14910 0.43 +1.2 3,045,271 + ABIE41_RS14910 0.43 +0.1 3,045,271 + ABIE41_RS14910 0.43 +0.1 3,045,272 - ABIE41_RS14910 0.43 -0.5
Or see this region's nucleotide sequence