Strain Fitness in Bosea sp. OAE506 around ABIE41_RS11025

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS11020 and ABIE41_RS11025 are separated by 101 nucleotidesABIE41_RS11025 and ABIE41_RS11030 overlap by 1 nucleotides ABIE41_RS11020: ABIE41_RS11020 - hypothetical protein, at 2,262,304 to 2,263,557 _RS11020 ABIE41_RS11025: ABIE41_RS11025 - sugar kinase, at 2,263,659 to 2,264,603 _RS11025 ABIE41_RS11030: ABIE41_RS11030 - TIGR01459 family HAD-type hydrolase, at 2,264,603 to 2,265,463 _RS11030 Position (kb) 2263 2264 2265Strain fitness (log2 ratio) -1 0 1 2 3 4at 2262.913 kb on + strand, within ABIE41_RS11020at 2262.913 kb on + strand, within ABIE41_RS11020at 2262.914 kb on - strand, within ABIE41_RS11020at 2262.914 kb on - strand, within ABIE41_RS11020at 2262.914 kb on - strand, within ABIE41_RS11020at 2262.914 kb on - strand, within ABIE41_RS11020at 2263.302 kb on + strand, within ABIE41_RS11020at 2263.602 kb on + strandat 2263.602 kb on + strandat 2263.603 kb on - strandat 2263.812 kb on + strand, within ABIE41_RS11025at 2263.812 kb on + strand, within ABIE41_RS11025at 2263.813 kb on - strand, within ABIE41_RS11025at 2263.813 kb on - strand, within ABIE41_RS11025at 2263.813 kb on - strand, within ABIE41_RS11025at 2263.926 kb on + strand, within ABIE41_RS11025at 2263.926 kb on + strand, within ABIE41_RS11025at 2263.926 kb on + strand, within ABIE41_RS11025at 2263.927 kb on - strand, within ABIE41_RS11025at 2263.965 kb on + strand, within ABIE41_RS11025at 2264.142 kb on + strand, within ABIE41_RS11025at 2264.143 kb on - strand, within ABIE41_RS11025at 2264.295 kb on + strand, within ABIE41_RS11025at 2264.296 kb on - strand, within ABIE41_RS11025at 2264.296 kb on - strand, within ABIE41_RS11025at 2264.430 kb on + strand, within ABIE41_RS11025at 2264.430 kb on + strand, within ABIE41_RS11025at 2264.431 kb on - strand, within ABIE41_RS11025at 2264.431 kb on - strand, within ABIE41_RS11025at 2264.431 kb on - strand, within ABIE41_RS11025at 2264.431 kb on - strand, within ABIE41_RS11025at 2264.431 kb on - strand, within ABIE41_RS11025at 2264.431 kb on - strand, within ABIE41_RS11025at 2264.454 kb on + strand, within ABIE41_RS11025at 2264.454 kb on + strand, within ABIE41_RS11025at 2264.454 kb on + strand, within ABIE41_RS11025at 2264.454 kb on + strand, within ABIE41_RS11025at 2264.455 kb on - strand, within ABIE41_RS11025at 2264.455 kb on - strand, within ABIE41_RS11025at 2264.455 kb on - strand, within ABIE41_RS11025at 2264.455 kb on - strand, within ABIE41_RS11025at 2264.455 kb on - strand, within ABIE41_RS11025at 2264.455 kb on - strand, within ABIE41_RS11025at 2264.455 kb on - strand, within ABIE41_RS11025at 2264.490 kb on + strand, within ABIE41_RS11025at 2265.152 kb on + strand, within ABIE41_RS11030at 2265.153 kb on - strand, within ABIE41_RS11030at 2265.207 kb on - strand, within ABIE41_RS11030at 2265.491 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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2,262,913 + ABIE41_RS11020 0.49 +1.1
2,262,913 + ABIE41_RS11020 0.49 -0.1
2,262,914 - ABIE41_RS11020 0.49 +0.5
2,262,914 - ABIE41_RS11020 0.49 +4.3
2,262,914 - ABIE41_RS11020 0.49 +0.6
2,262,914 - ABIE41_RS11020 0.49 +0.0
2,263,302 + ABIE41_RS11020 0.80 -0.3
2,263,602 + +0.5
2,263,602 + +0.2
2,263,603 - +0.0
2,263,812 + ABIE41_RS11025 0.16 -0.2
2,263,812 + ABIE41_RS11025 0.16 -1.3
2,263,813 - ABIE41_RS11025 0.16 -0.4
2,263,813 - ABIE41_RS11025 0.16 +2.3
2,263,813 - ABIE41_RS11025 0.16 -0.9
2,263,926 + ABIE41_RS11025 0.28 -0.4
2,263,926 + ABIE41_RS11025 0.28 -0.0
2,263,926 + ABIE41_RS11025 0.28 +0.4
2,263,927 - ABIE41_RS11025 0.28 +0.2
2,263,965 + ABIE41_RS11025 0.32 -0.5
2,264,142 + ABIE41_RS11025 0.51 -0.1
2,264,143 - ABIE41_RS11025 0.51 -0.2
2,264,295 + ABIE41_RS11025 0.67 +0.6
2,264,296 - ABIE41_RS11025 0.67 +0.0
2,264,296 - ABIE41_RS11025 0.67 +0.4
2,264,430 + ABIE41_RS11025 0.82 +2.7
2,264,430 + ABIE41_RS11025 0.82 -1.1
2,264,431 - ABIE41_RS11025 0.82 -0.6
2,264,431 - ABIE41_RS11025 0.82 -0.1
2,264,431 - ABIE41_RS11025 0.82 -0.1
2,264,431 - ABIE41_RS11025 0.82 +0.1
2,264,431 - ABIE41_RS11025 0.82 -0.1
2,264,431 - ABIE41_RS11025 0.82 -0.4
2,264,454 + ABIE41_RS11025 0.84 +0.0
2,264,454 + ABIE41_RS11025 0.84 +0.3
2,264,454 + ABIE41_RS11025 0.84 -0.2
2,264,454 + ABIE41_RS11025 0.84 -0.4
2,264,455 - ABIE41_RS11025 0.84 -0.2
2,264,455 - ABIE41_RS11025 0.84 -0.4
2,264,455 - ABIE41_RS11025 0.84 -0.6
2,264,455 - ABIE41_RS11025 0.84 -0.5
2,264,455 - ABIE41_RS11025 0.84 -0.0
2,264,455 - ABIE41_RS11025 0.84 -0.1
2,264,455 - ABIE41_RS11025 0.84 +1.0
2,264,490 + ABIE41_RS11025 0.88 -0.1
2,265,152 + ABIE41_RS11030 0.64 -0.6
2,265,153 - ABIE41_RS11030 0.64 -0.4
2,265,207 - ABIE41_RS11030 0.70 -1.2
2,265,491 + -0.8

Or see this region's nucleotide sequence