Strain Fitness in Bosea sp. OAE506 around ABIE41_RS10080

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS10065 and ABIE41_RS10070 are separated by 167 nucleotidesABIE41_RS10070 and ABIE41_RS10075 overlap by 4 nucleotidesABIE41_RS10075 and ABIE41_RS10080 overlap by 4 nucleotidesABIE41_RS10080 and ABIE41_RS10085 are separated by 125 nucleotidesABIE41_RS10085 and ABIE41_RS10090 are separated by 53 nucleotidesABIE41_RS10090 and ABIE41_RS10095 overlap by 88 nucleotides ABIE41_RS10065: ABIE41_RS10065 - TspO/MBR family protein, at 2,078,228 to 2,078,707 _RS10065 ABIE41_RS10070: ABIE41_RS10070 - sulfite-sensing transcriptional repressor BigR, at 2,078,875 to 2,079,165 _RS10070 ABIE41_RS10075: ABIE41_RS10075 - YeeE/YedE family protein, at 2,079,162 to 2,079,569 _RS10075 ABIE41_RS10080: ABIE41_RS10080 - YeeE/YedE family protein, at 2,079,566 to 2,080,006 _RS10080 ABIE41_RS10085: ABIE41_RS10085 - hypothetical protein, at 2,080,132 to 2,080,275 _RS10085 ABIE41_RS10090: ABIE41_RS10090 - hypothetical protein, at 2,080,329 to 2,080,835 _RS10090 ABIE41_RS10095: ABIE41_RS10095 - IS3 family transposase, at 2,080,748 to 2,081,847 _RS10095 Position (kb) 2079 2080 2081Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2078.614 kb on - strand, within ABIE41_RS10065at 2078.715 kb on - strandat 2078.715 kb on - strandat 2078.818 kb on + strandat 2079.133 kb on + strand, within ABIE41_RS10070at 2079.134 kb on - strand, within ABIE41_RS10070at 2079.134 kb on - strand, within ABIE41_RS10070at 2079.175 kb on - strandat 2079.720 kb on + strand, within ABIE41_RS10080at 2079.721 kb on - strand, within ABIE41_RS10080at 2080.201 kb on + strand, within ABIE41_RS10085at 2080.201 kb on + strand, within ABIE41_RS10085at 2080.201 kb on + strand, within ABIE41_RS10085at 2080.201 kb on + strand, within ABIE41_RS10085at 2080.201 kb on + strand, within ABIE41_RS10085at 2080.201 kb on + strand, within ABIE41_RS10085at 2080.201 kb on + strand, within ABIE41_RS10085at 2080.201 kb on + strand, within ABIE41_RS10085at 2080.201 kb on + strand, within ABIE41_RS10085at 2080.201 kb on + strand, within ABIE41_RS10085at 2080.202 kb on - strand, within ABIE41_RS10085at 2080.202 kb on - strand, within ABIE41_RS10085at 2080.202 kb on - strand, within ABIE41_RS10085at 2080.202 kb on - strand, within ABIE41_RS10085at 2080.202 kb on - strand, within ABIE41_RS10085at 2080.202 kb on - strand, within ABIE41_RS10085at 2080.202 kb on - strand, within ABIE41_RS10085at 2080.202 kb on - strand, within ABIE41_RS10085at 2080.202 kb on - strand, within ABIE41_RS10085at 2080.202 kb on - strand, within ABIE41_RS10085at 2080.203 kb on + strand, within ABIE41_RS10085at 2080.203 kb on + strand, within ABIE41_RS10085at 2080.203 kb on + strand, within ABIE41_RS10085at 2080.203 kb on + strand, within ABIE41_RS10085at 2080.204 kb on - strand, within ABIE41_RS10085at 2080.204 kb on - strand, within ABIE41_RS10085at 2080.444 kb on + strand, within ABIE41_RS10090at 2080.445 kb on - strand, within ABIE41_RS10090at 2080.445 kb on - strand, within ABIE41_RS10090at 2080.475 kb on - strand, within ABIE41_RS10090

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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2,078,614 - ABIE41_RS10065 0.80 +0.2
2,078,715 - -0.9
2,078,715 - -0.0
2,078,818 + +0.0
2,079,133 + ABIE41_RS10070 0.89 -2.7
2,079,134 - ABIE41_RS10070 0.89 +1.0
2,079,134 - ABIE41_RS10070 0.89 -0.3
2,079,175 - -1.2
2,079,720 + ABIE41_RS10080 0.35 +0.4
2,079,721 - ABIE41_RS10080 0.35 +0.3
2,080,201 + ABIE41_RS10085 0.48 -0.4
2,080,201 + ABIE41_RS10085 0.48 +0.9
2,080,201 + ABIE41_RS10085 0.48 -0.1
2,080,201 + ABIE41_RS10085 0.48 -0.3
2,080,201 + ABIE41_RS10085 0.48 -0.2
2,080,201 + ABIE41_RS10085 0.48 +0.9
2,080,201 + ABIE41_RS10085 0.48 +2.9
2,080,201 + ABIE41_RS10085 0.48 -0.0
2,080,201 + ABIE41_RS10085 0.48 +1.4
2,080,201 + ABIE41_RS10085 0.48 -0.0
2,080,202 - ABIE41_RS10085 0.49 +0.6
2,080,202 - ABIE41_RS10085 0.49 -1.0
2,080,202 - ABIE41_RS10085 0.49 +4.0
2,080,202 - ABIE41_RS10085 0.49 +0.3
2,080,202 - ABIE41_RS10085 0.49 +0.7
2,080,202 - ABIE41_RS10085 0.49 -0.1
2,080,202 - ABIE41_RS10085 0.49 +0.4
2,080,202 - ABIE41_RS10085 0.49 +1.2
2,080,202 - ABIE41_RS10085 0.49 +0.1
2,080,202 - ABIE41_RS10085 0.49 +0.1
2,080,203 + ABIE41_RS10085 0.49 -0.5
2,080,203 + ABIE41_RS10085 0.49 +0.7
2,080,203 + ABIE41_RS10085 0.49 -0.5
2,080,203 + ABIE41_RS10085 0.49 +1.5
2,080,204 - ABIE41_RS10085 0.50 +0.4
2,080,204 - ABIE41_RS10085 0.50 +0.5
2,080,444 + ABIE41_RS10090 0.23 -0.3
2,080,445 - ABIE41_RS10090 0.23 +0.0
2,080,445 - ABIE41_RS10090 0.23 -0.0
2,080,475 - ABIE41_RS10090 0.29 -0.4

Or see this region's nucleotide sequence