Strain Fitness in Bosea sp. OAE506 around ABIE41_RS10065

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS10060 and ABIE41_RS10065 are separated by 12 nucleotidesABIE41_RS10065 and ABIE41_RS10070 are separated by 167 nucleotidesABIE41_RS10070 and ABIE41_RS10075 overlap by 4 nucleotidesABIE41_RS10075 and ABIE41_RS10080 overlap by 4 nucleotides ABIE41_RS10060: ABIE41_RS10060 - hydroxymethylbilane synthase, at 2,077,271 to 2,078,215 _RS10060 ABIE41_RS10065: ABIE41_RS10065 - TspO/MBR family protein, at 2,078,228 to 2,078,707 _RS10065 ABIE41_RS10070: ABIE41_RS10070 - sulfite-sensing transcriptional repressor BigR, at 2,078,875 to 2,079,165 _RS10070 ABIE41_RS10075: ABIE41_RS10075 - YeeE/YedE family protein, at 2,079,162 to 2,079,569 _RS10075 ABIE41_RS10080: ABIE41_RS10080 - YeeE/YedE family protein, at 2,079,566 to 2,080,006 _RS10080 Position (kb) 2078 2079Strain fitness (log2 ratio) -2 -1 0 1 2at 2077.257 kb on + strandat 2077.257 kb on + strandat 2077.257 kb on + strandat 2077.257 kb on + strandat 2078.466 kb on + strand, within ABIE41_RS10065at 2078.466 kb on + strand, within ABIE41_RS10065at 2078.467 kb on - strand, within ABIE41_RS10065at 2078.467 kb on - strand, within ABIE41_RS10065at 2078.467 kb on - strand, within ABIE41_RS10065at 2078.467 kb on - strand, within ABIE41_RS10065at 2078.544 kb on + strand, within ABIE41_RS10065at 2078.544 kb on + strand, within ABIE41_RS10065at 2078.544 kb on + strand, within ABIE41_RS10065at 2078.544 kb on + strand, within ABIE41_RS10065at 2078.544 kb on + strand, within ABIE41_RS10065at 2078.544 kb on + strand, within ABIE41_RS10065at 2078.545 kb on - strand, within ABIE41_RS10065at 2078.545 kb on - strand, within ABIE41_RS10065at 2078.545 kb on - strand, within ABIE41_RS10065at 2078.614 kb on - strand, within ABIE41_RS10065at 2078.715 kb on - strandat 2078.715 kb on - strandat 2078.818 kb on + strandat 2079.133 kb on + strand, within ABIE41_RS10070at 2079.134 kb on - strand, within ABIE41_RS10070at 2079.134 kb on - strand, within ABIE41_RS10070at 2079.175 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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2,077,257 + -0.4
2,077,257 + -0.4
2,077,257 + -0.3
2,077,257 + -0.2
2,078,466 + ABIE41_RS10065 0.50 -0.0
2,078,466 + ABIE41_RS10065 0.50 +1.1
2,078,467 - ABIE41_RS10065 0.50 +1.3
2,078,467 - ABIE41_RS10065 0.50 +2.6
2,078,467 - ABIE41_RS10065 0.50 -0.9
2,078,467 - ABIE41_RS10065 0.50 +1.7
2,078,544 + ABIE41_RS10065 0.66 +1.6
2,078,544 + ABIE41_RS10065 0.66 +0.3
2,078,544 + ABIE41_RS10065 0.66 +0.8
2,078,544 + ABIE41_RS10065 0.66 -1.1
2,078,544 + ABIE41_RS10065 0.66 -0.2
2,078,544 + ABIE41_RS10065 0.66 +0.1
2,078,545 - ABIE41_RS10065 0.66 -0.3
2,078,545 - ABIE41_RS10065 0.66 -0.2
2,078,545 - ABIE41_RS10065 0.66 +0.1
2,078,614 - ABIE41_RS10065 0.80 +0.2
2,078,715 - -0.9
2,078,715 - -0.0
2,078,818 + +0.0
2,079,133 + ABIE41_RS10070 0.89 -2.7
2,079,134 - ABIE41_RS10070 0.89 +1.0
2,079,134 - ABIE41_RS10070 0.89 -0.3
2,079,175 - -1.2

Or see this region's nucleotide sequence