Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS08105 and ABIE41_RS08110 are separated by 1 nucleotides ABIE41_RS08110 and ABIE41_RS08115 are separated by 319 nucleotides
ABIE41_RS08105: ABIE41_RS08105 - HlyD family type I secretion periplasmic adaptor subunit, at 1,674,205 to 1,675,521
_RS08105
ABIE41_RS08110: ABIE41_RS08110 - type I secretion system permease/ATPase, at 1,675,523 to 1,677,247
_RS08110
ABIE41_RS08115: ABIE41_RS08115 - dihydroorotase, at 1,677,567 to 1,678,922
_RS08115
Position (kb) 1675
1676
1677
1678 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1674.882 kb on - strand, within ABIE41_RS08105 at 1674.882 kb on - strand, within ABIE41_RS08105 at 1675.644 kb on + strand at 1675.645 kb on - strand at 1675.645 kb on - strand at 1675.810 kb on - strand, within ABIE41_RS08110 at 1675.887 kb on + strand, within ABIE41_RS08110 at 1675.887 kb on + strand, within ABIE41_RS08110 at 1675.888 kb on - strand, within ABIE41_RS08110 at 1675.888 kb on - strand, within ABIE41_RS08110 at 1676.031 kb on + strand, within ABIE41_RS08110 at 1676.031 kb on + strand, within ABIE41_RS08110 at 1676.032 kb on - strand, within ABIE41_RS08110 at 1676.032 kb on - strand, within ABIE41_RS08110 at 1676.032 kb on - strand, within ABIE41_RS08110 at 1676.580 kb on + strand, within ABIE41_RS08110 at 1676.581 kb on - strand, within ABIE41_RS08110 at 1676.581 kb on - strand, within ABIE41_RS08110 at 1676.790 kb on - strand, within ABIE41_RS08110 at 1676.790 kb on - strand, within ABIE41_RS08110 at 1677.123 kb on + strand at 1677.123 kb on + strand at 1677.123 kb on + strand at 1677.123 kb on + strand at 1677.123 kb on + strand at 1677.123 kb on + strand at 1677.124 kb on - strand at 1677.124 kb on - strand at 1677.138 kb on + strand at 1677.138 kb on + strand at 1677.139 kb on - strand at 1677.139 kb on - strand at 1677.139 kb on - strand at 1677.139 kb on - strand at 1677.139 kb on - strand at 1677.139 kb on - strand at 1677.139 kb on - strand at 1677.139 kb on - strand at 1677.139 kb on - strand at 1677.139 kb on - strand at 1677.309 kb on + strand at 1677.309 kb on + strand at 1677.310 kb on - strand at 1677.847 kb on + strand, within ABIE41_RS08115 at 1677.847 kb on + strand, within ABIE41_RS08115 at 1677.847 kb on + strand, within ABIE41_RS08115 at 1677.848 kb on - strand, within ABIE41_RS08115 at 1677.848 kb on - strand, within ABIE41_RS08115 at 1678.120 kb on + strand, within ABIE41_RS08115 at 1678.120 kb on + strand, within ABIE41_RS08115 at 1678.121 kb on - strand, within ABIE41_RS08115
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 1,674,882 - ABIE41_RS08105 0.51 +1.2 1,674,882 - ABIE41_RS08105 0.51 +0.8 1,675,644 + -0.1 1,675,645 - -0.0 1,675,645 - +0.1 1,675,810 - ABIE41_RS08110 0.17 +0.1 1,675,887 + ABIE41_RS08110 0.21 -0.2 1,675,887 + ABIE41_RS08110 0.21 +0.1 1,675,888 - ABIE41_RS08110 0.21 +0.1 1,675,888 - ABIE41_RS08110 0.21 +0.2 1,676,031 + ABIE41_RS08110 0.29 +3.1 1,676,031 + ABIE41_RS08110 0.29 +0.5 1,676,032 - ABIE41_RS08110 0.30 +2.5 1,676,032 - ABIE41_RS08110 0.30 -0.7 1,676,032 - ABIE41_RS08110 0.30 +1.2 1,676,580 + ABIE41_RS08110 0.61 -0.6 1,676,581 - ABIE41_RS08110 0.61 -0.4 1,676,581 - ABIE41_RS08110 0.61 -0.2 1,676,790 - ABIE41_RS08110 0.73 -0.2 1,676,790 - ABIE41_RS08110 0.73 +0.8 1,677,123 + +2.8 1,677,123 + +0.8 1,677,123 + +0.7 1,677,123 + -0.2 1,677,123 + +0.6 1,677,123 + +0.2 1,677,124 - +0.0 1,677,124 - -2.9 1,677,138 + +0.4 1,677,138 + -0.7 1,677,139 - +0.4 1,677,139 - +0.7 1,677,139 - -0.7 1,677,139 - +0.3 1,677,139 - -0.6 1,677,139 - +0.0 1,677,139 - +0.1 1,677,139 - -0.7 1,677,139 - -0.4 1,677,139 - -0.5 1,677,309 + -0.4 1,677,309 + +0.3 1,677,310 - -0.0 1,677,847 + ABIE41_RS08115 0.21 -0.7 1,677,847 + ABIE41_RS08115 0.21 +1.5 1,677,847 + ABIE41_RS08115 0.21 -0.1 1,677,848 - ABIE41_RS08115 0.21 -0.1 1,677,848 - ABIE41_RS08115 0.21 +0.6 1,678,120 + ABIE41_RS08115 0.41 +0.3 1,678,120 + ABIE41_RS08115 0.41 +0.3 1,678,121 - ABIE41_RS08115 0.41 +0.4
Or see this region's nucleotide sequence