Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07985

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS07980 and ABIE41_RS07985 are separated by 10 nucleotidesABIE41_RS07985 and ABIE41_RS07990 are separated by 27 nucleotides ABIE41_RS07980: ABIE41_RS07980 - serine hydrolase, at 1,639,334 to 1,640,917 _RS07980 ABIE41_RS07985: ABIE41_RS07985 - DMT family transporter, at 1,640,928 to 1,641,830 _RS07985 ABIE41_RS07990: ABIE41_RS07990 - GTP-binding protein, at 1,641,858 to 1,643,012 _RS07990 Position (kb) 1640 1641 1642Strain fitness (log2 ratio) -1 0 1 2 3at 1639.943 kb on + strand, within ABIE41_RS07980at 1639.973 kb on + strand, within ABIE41_RS07980at 1639.973 kb on + strand, within ABIE41_RS07980at 1639.973 kb on + strand, within ABIE41_RS07980at 1639.973 kb on + strand, within ABIE41_RS07980at 1639.974 kb on - strand, within ABIE41_RS07980at 1640.129 kb on + strand, within ABIE41_RS07980at 1640.129 kb on + strand, within ABIE41_RS07980at 1640.130 kb on - strand, within ABIE41_RS07980at 1640.130 kb on - strand, within ABIE41_RS07980at 1640.130 kb on - strand, within ABIE41_RS07980at 1640.130 kb on - strand, within ABIE41_RS07980at 1640.130 kb on - strand, within ABIE41_RS07980at 1640.313 kb on + strand, within ABIE41_RS07980at 1640.998 kb on - strandat 1641.198 kb on + strand, within ABIE41_RS07985at 1641.198 kb on + strand, within ABIE41_RS07985at 1641.199 kb on - strand, within ABIE41_RS07985at 1641.199 kb on - strand, within ABIE41_RS07985at 1641.199 kb on - strand, within ABIE41_RS07985at 1641.255 kb on + strand, within ABIE41_RS07985at 1641.256 kb on - strand, within ABIE41_RS07985at 1641.606 kb on + strand, within ABIE41_RS07985at 1641.631 kb on + strand, within ABIE41_RS07985at 1641.632 kb on - strand, within ABIE41_RS07985at 1641.747 kb on + strandat 1641.785 kb on + strandat 1642.483 kb on - strand, within ABIE41_RS07990

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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1,639,943 + ABIE41_RS07980 0.38 -0.6
1,639,973 + ABIE41_RS07980 0.40 -1.1
1,639,973 + ABIE41_RS07980 0.40 -0.3
1,639,973 + ABIE41_RS07980 0.40 +0.1
1,639,973 + ABIE41_RS07980 0.40 +0.5
1,639,974 - ABIE41_RS07980 0.40 +3.4
1,640,129 + ABIE41_RS07980 0.50 +2.8
1,640,129 + ABIE41_RS07980 0.50 -0.8
1,640,130 - ABIE41_RS07980 0.50 -0.7
1,640,130 - ABIE41_RS07980 0.50 -0.1
1,640,130 - ABIE41_RS07980 0.50 -0.5
1,640,130 - ABIE41_RS07980 0.50 -0.6
1,640,130 - ABIE41_RS07980 0.50 +0.5
1,640,313 + ABIE41_RS07980 0.62 -0.9
1,640,998 - -0.1
1,641,198 + ABIE41_RS07985 0.30 +0.1
1,641,198 + ABIE41_RS07985 0.30 -0.4
1,641,199 - ABIE41_RS07985 0.30 -0.0
1,641,199 - ABIE41_RS07985 0.30 -0.2
1,641,199 - ABIE41_RS07985 0.30 -1.1
1,641,255 + ABIE41_RS07985 0.36 +0.5
1,641,256 - ABIE41_RS07985 0.36 -0.2
1,641,606 + ABIE41_RS07985 0.75 -1.4
1,641,631 + ABIE41_RS07985 0.78 +0.5
1,641,632 - ABIE41_RS07985 0.78 -0.2
1,641,747 + +0.2
1,641,785 + +0.4
1,642,483 - ABIE41_RS07990 0.54 +0.0

Or see this region's nucleotide sequence