Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07920

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS07915 and ABIE41_RS07920 are separated by 129 nucleotidesABIE41_RS07920 and ABIE41_RS07925 are separated by 22 nucleotides ABIE41_RS07915: ABIE41_RS07915 - bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA, at 1,626,168 to 1,629,260 _RS07915 ABIE41_RS07920: ABIE41_RS07920 - Lrp/AsnC ligand binding domain-containing protein, at 1,629,390 to 1,629,845 _RS07920 ABIE41_RS07925: ABIE41_RS07925 - TerC family protein, at 1,629,868 to 1,630,878 _RS07925 Position (kb) 1629 1630Strain fitness (log2 ratio) -1 0 1 2at 1628.450 kb on - strand, within ABIE41_RS07915at 1628.450 kb on - strand, within ABIE41_RS07915at 1628.626 kb on + strand, within ABIE41_RS07915at 1628.626 kb on + strand, within ABIE41_RS07915at 1628.626 kb on + strand, within ABIE41_RS07915at 1628.626 kb on + strand, within ABIE41_RS07915at 1628.627 kb on - strand, within ABIE41_RS07915at 1628.638 kb on + strand, within ABIE41_RS07915at 1628.638 kb on + strand, within ABIE41_RS07915at 1628.639 kb on - strand, within ABIE41_RS07915at 1628.693 kb on - strand, within ABIE41_RS07915at 1628.699 kb on - strand, within ABIE41_RS07915at 1629.067 kb on + strandat 1629.192 kb on + strandat 1629.192 kb on + strandat 1629.193 kb on - strandat 1629.319 kb on - strandat 1629.348 kb on + strandat 1629.528 kb on + strand, within ABIE41_RS07920at 1629.528 kb on + strand, within ABIE41_RS07920at 1629.528 kb on + strand, within ABIE41_RS07920at 1629.528 kb on + strand, within ABIE41_RS07920at 1629.528 kb on + strand, within ABIE41_RS07920at 1629.528 kb on + strand, within ABIE41_RS07920at 1629.529 kb on - strand, within ABIE41_RS07920at 1629.529 kb on - strand, within ABIE41_RS07920at 1629.529 kb on - strand, within ABIE41_RS07920at 1629.702 kb on + strand, within ABIE41_RS07920at 1629.702 kb on + strand, within ABIE41_RS07920at 1629.702 kb on + strand, within ABIE41_RS07920at 1629.703 kb on - strand, within ABIE41_RS07920at 1629.798 kb on + strand, within ABIE41_RS07920at 1629.798 kb on + strand, within ABIE41_RS07920at 1629.799 kb on - strand, within ABIE41_RS07920at 1629.799 kb on - strand, within ABIE41_RS07920at 1629.866 kb on + strandat 1629.867 kb on - strandat 1630.052 kb on + strand, within ABIE41_RS07925at 1630.052 kb on + strand, within ABIE41_RS07925at 1630.052 kb on + strand, within ABIE41_RS07925at 1630.053 kb on - strand, within ABIE41_RS07925at 1630.088 kb on + strand, within ABIE41_RS07925at 1630.241 kb on + strand, within ABIE41_RS07925at 1630.241 kb on + strand, within ABIE41_RS07925at 1630.241 kb on + strand, within ABIE41_RS07925at 1630.359 kb on + strand, within ABIE41_RS07925at 1630.359 kb on + strand, within ABIE41_RS07925at 1630.359 kb on + strand, within ABIE41_RS07925at 1630.360 kb on - strand, within ABIE41_RS07925at 1630.360 kb on - strand, within ABIE41_RS07925at 1630.442 kb on + strand, within ABIE41_RS07925at 1630.443 kb on - strand, within ABIE41_RS07925at 1630.443 kb on - strand, within ABIE41_RS07925at 1630.532 kb on + strand, within ABIE41_RS07925at 1630.625 kb on + strand, within ABIE41_RS07925at 1630.626 kb on - strand, within ABIE41_RS07925at 1630.626 kb on - strand, within ABIE41_RS07925at 1630.721 kb on + strand, within ABIE41_RS07925at 1630.721 kb on + strand, within ABIE41_RS07925at 1630.721 kb on + strand, within ABIE41_RS07925at 1630.721 kb on + strand, within ABIE41_RS07925at 1630.721 kb on + strand, within ABIE41_RS07925at 1630.721 kb on + strand, within ABIE41_RS07925at 1630.721 kb on + strand, within ABIE41_RS07925at 1630.721 kb on + strand, within ABIE41_RS07925at 1630.722 kb on - strand, within ABIE41_RS07925at 1630.722 kb on - strand, within ABIE41_RS07925at 1630.722 kb on - strand, within ABIE41_RS07925at 1630.722 kb on - strand, within ABIE41_RS07925at 1630.722 kb on - strand, within ABIE41_RS07925

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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1,628,450 - ABIE41_RS07915 0.74 +1.2
1,628,450 - ABIE41_RS07915 0.74 +0.6
1,628,626 + ABIE41_RS07915 0.79 -0.4
1,628,626 + ABIE41_RS07915 0.79 -1.1
1,628,626 + ABIE41_RS07915 0.79 -0.3
1,628,626 + ABIE41_RS07915 0.79 +0.3
1,628,627 - ABIE41_RS07915 0.80 +0.8
1,628,638 + ABIE41_RS07915 0.80 +0.3
1,628,638 + ABIE41_RS07915 0.80 -1.1
1,628,639 - ABIE41_RS07915 0.80 +0.2
1,628,693 - ABIE41_RS07915 0.82 -0.5
1,628,699 - ABIE41_RS07915 0.82 +0.4
1,629,067 + -0.8
1,629,192 + +0.2
1,629,192 + -0.2
1,629,193 - -0.6
1,629,319 - +0.8
1,629,348 + -0.4
1,629,528 + ABIE41_RS07920 0.30 -0.0
1,629,528 + ABIE41_RS07920 0.30 -0.7
1,629,528 + ABIE41_RS07920 0.30 -0.3
1,629,528 + ABIE41_RS07920 0.30 +0.3
1,629,528 + ABIE41_RS07920 0.30 -1.2
1,629,528 + ABIE41_RS07920 0.30 -0.5
1,629,529 - ABIE41_RS07920 0.30 -1.1
1,629,529 - ABIE41_RS07920 0.30 -0.5
1,629,529 - ABIE41_RS07920 0.30 -1.2
1,629,702 + ABIE41_RS07920 0.68 -1.1
1,629,702 + ABIE41_RS07920 0.68 +0.3
1,629,702 + ABIE41_RS07920 0.68 +0.3
1,629,703 - ABIE41_RS07920 0.69 -0.3
1,629,798 + ABIE41_RS07920 0.89 -0.4
1,629,798 + ABIE41_RS07920 0.89 +0.6
1,629,799 - ABIE41_RS07920 0.90 -1.4
1,629,799 - ABIE41_RS07920 0.90 +0.3
1,629,866 + +0.5
1,629,867 - -0.3
1,630,052 + ABIE41_RS07925 0.18 +0.5
1,630,052 + ABIE41_RS07925 0.18 -0.8
1,630,052 + ABIE41_RS07925 0.18 -0.6
1,630,053 - ABIE41_RS07925 0.18 +0.4
1,630,088 + ABIE41_RS07925 0.22 -0.4
1,630,241 + ABIE41_RS07925 0.37 -0.0
1,630,241 + ABIE41_RS07925 0.37 -0.7
1,630,241 + ABIE41_RS07925 0.37 -0.7
1,630,359 + ABIE41_RS07925 0.49 +0.2
1,630,359 + ABIE41_RS07925 0.49 -1.5
1,630,359 + ABIE41_RS07925 0.49 -0.4
1,630,360 - ABIE41_RS07925 0.49 +2.0
1,630,360 - ABIE41_RS07925 0.49 -0.4
1,630,442 + ABIE41_RS07925 0.57 -0.4
1,630,443 - ABIE41_RS07925 0.57 -0.8
1,630,443 - ABIE41_RS07925 0.57 -0.4
1,630,532 + ABIE41_RS07925 0.66 +0.4
1,630,625 + ABIE41_RS07925 0.75 -0.3
1,630,626 - ABIE41_RS07925 0.75 -0.4
1,630,626 - ABIE41_RS07925 0.75 -0.2
1,630,721 + ABIE41_RS07925 0.84 +0.3
1,630,721 + ABIE41_RS07925 0.84 -0.2
1,630,721 + ABIE41_RS07925 0.84 -0.3
1,630,721 + ABIE41_RS07925 0.84 +0.3
1,630,721 + ABIE41_RS07925 0.84 +0.7
1,630,721 + ABIE41_RS07925 0.84 -0.1
1,630,721 + ABIE41_RS07925 0.84 -0.7
1,630,721 + ABIE41_RS07925 0.84 -0.3
1,630,722 - ABIE41_RS07925 0.84 +0.2
1,630,722 - ABIE41_RS07925 0.84 +0.5
1,630,722 - ABIE41_RS07925 0.84 -0.1
1,630,722 - ABIE41_RS07925 0.84 +0.9
1,630,722 - ABIE41_RS07925 0.84 -0.1

Or see this region's nucleotide sequence