Strain Fitness in Bosea sp. OAE506 around ABIE41_RS06315

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS06305 and ABIE41_RS06310 are separated by 13 nucleotidesABIE41_RS06310 and ABIE41_RS06315 are separated by 151 nucleotidesABIE41_RS06315 and ABIE41_RS06320 are separated by 43 nucleotidesABIE41_RS06320 and ABIE41_RS06325 are separated by 142 nucleotides ABIE41_RS06305: ABIE41_RS06305 - sodium:solute symporter family protein, at 1,299,562 to 1,301,517 _RS06305 ABIE41_RS06310: ABIE41_RS06310 - DUF4212 domain-containing protein, at 1,301,531 to 1,301,791 _RS06310 ABIE41_RS06315: ABIE41_RS06315 - alpha/beta hydrolase, at 1,301,943 to 1,302,932 _RS06315 ABIE41_RS06320: ABIE41_RS06320 - tetratricopeptide repeat protein, at 1,302,976 to 1,303,641 _RS06320 ABIE41_RS06325: ABIE41_RS06325 - type B 50S ribosomal protein L36, at 1,303,784 to 1,303,909 _RS06325 Position (kb) 1301 1302 1303Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1301.009 kb on + strand, within ABIE41_RS06305at 1301.009 kb on + strand, within ABIE41_RS06305at 1301.009 kb on + strand, within ABIE41_RS06305at 1301.009 kb on + strand, within ABIE41_RS06305at 1301.009 kb on + strand, within ABIE41_RS06305at 1301.009 kb on + strand, within ABIE41_RS06305at 1301.009 kb on + strand, within ABIE41_RS06305at 1301.009 kb on + strand, within ABIE41_RS06305at 1301.009 kb on + strand, within ABIE41_RS06305at 1301.009 kb on + strand, within ABIE41_RS06305at 1301.009 kb on + strand, within ABIE41_RS06305at 1301.009 kb on + strand, within ABIE41_RS06305at 1301.009 kb on + strand, within ABIE41_RS06305at 1301.009 kb on + strand, within ABIE41_RS06305at 1301.009 kb on + strand, within ABIE41_RS06305at 1301.009 kb on + strand, within ABIE41_RS06305at 1301.009 kb on + strand, within ABIE41_RS06305at 1301.009 kb on + strand, within ABIE41_RS06305at 1301.010 kb on - strand, within ABIE41_RS06305at 1301.010 kb on - strand, within ABIE41_RS06305at 1301.010 kb on - strand, within ABIE41_RS06305at 1301.010 kb on - strand, within ABIE41_RS06305at 1301.010 kb on - strand, within ABIE41_RS06305at 1301.010 kb on - strand, within ABIE41_RS06305at 1301.010 kb on - strand, within ABIE41_RS06305at 1301.010 kb on - strand, within ABIE41_RS06305at 1301.010 kb on - strand, within ABIE41_RS06305at 1301.099 kb on + strand, within ABIE41_RS06305at 1301.099 kb on + strand, within ABIE41_RS06305at 1301.099 kb on + strand, within ABIE41_RS06305at 1301.099 kb on + strand, within ABIE41_RS06305at 1301.100 kb on - strand, within ABIE41_RS06305at 1301.100 kb on - strand, within ABIE41_RS06305at 1301.121 kb on - strand, within ABIE41_RS06305at 1301.150 kb on + strand, within ABIE41_RS06305at 1301.150 kb on + strand, within ABIE41_RS06305at 1301.150 kb on + strand, within ABIE41_RS06305at 1301.150 kb on + strand, within ABIE41_RS06305at 1301.150 kb on + strand, within ABIE41_RS06305at 1301.150 kb on + strand, within ABIE41_RS06305at 1301.151 kb on - strand, within ABIE41_RS06305at 1301.151 kb on - strand, within ABIE41_RS06305at 1301.151 kb on - strand, within ABIE41_RS06305at 1301.151 kb on - strand, within ABIE41_RS06305at 1301.151 kb on - strand, within ABIE41_RS06305at 1301.190 kb on - strand, within ABIE41_RS06305at 1301.201 kb on + strand, within ABIE41_RS06305at 1301.201 kb on + strand, within ABIE41_RS06305at 1301.201 kb on + strand, within ABIE41_RS06305at 1301.202 kb on - strand, within ABIE41_RS06305at 1301.202 kb on - strand, within ABIE41_RS06305at 1301.270 kb on + strand, within ABIE41_RS06305at 1301.270 kb on + strand, within ABIE41_RS06305at 1301.270 kb on + strand, within ABIE41_RS06305at 1301.270 kb on + strand, within ABIE41_RS06305at 1301.270 kb on + strand, within ABIE41_RS06305at 1301.271 kb on - strand, within ABIE41_RS06305at 1301.300 kb on + strand, within ABIE41_RS06305at 1301.300 kb on + strand, within ABIE41_RS06305at 1301.300 kb on + strand, within ABIE41_RS06305at 1301.300 kb on + strand, within ABIE41_RS06305at 1301.300 kb on + strand, within ABIE41_RS06305at 1301.300 kb on + strand, within ABIE41_RS06305at 1301.301 kb on - strand, within ABIE41_RS06305at 1301.301 kb on - strand, within ABIE41_RS06305at 1301.301 kb on - strand, within ABIE41_RS06305at 1301.301 kb on - strand, within ABIE41_RS06305at 1301.302 kb on - strand, within ABIE41_RS06305at 1301.303 kb on + strand, within ABIE41_RS06305at 1301.303 kb on + strand, within ABIE41_RS06305at 1301.304 kb on - strand, within ABIE41_RS06305at 1301.348 kb on + strandat 1301.348 kb on + strandat 1301.348 kb on + strandat 1301.348 kb on + strandat 1301.348 kb on + strandat 1301.348 kb on + strandat 1301.349 kb on - strandat 1301.349 kb on - strandat 1301.379 kb on - strandat 1301.454 kb on + strandat 1301.457 kb on - strandat 1301.457 kb on - strandat 1301.457 kb on - strandat 1301.465 kb on + strandat 1301.465 kb on + strandat 1301.465 kb on + strandat 1301.553 kb on + strandat 1301.553 kb on + strandat 1301.554 kb on - strandat 1301.554 kb on - strandat 1301.609 kb on + strand, within ABIE41_RS06310at 1301.610 kb on - strand, within ABIE41_RS06310at 1301.610 kb on - strand, within ABIE41_RS06310at 1301.636 kb on - strand, within ABIE41_RS06310at 1301.637 kb on + strand, within ABIE41_RS06310at 1301.637 kb on + strand, within ABIE41_RS06310at 1301.637 kb on + strand, within ABIE41_RS06310at 1301.637 kb on + strand, within ABIE41_RS06310at 1301.692 kb on + strand, within ABIE41_RS06310at 1301.692 kb on + strand, within ABIE41_RS06310at 1301.692 kb on + strand, within ABIE41_RS06310at 1301.693 kb on - strand, within ABIE41_RS06310at 1301.693 kb on - strand, within ABIE41_RS06310at 1301.693 kb on - strand, within ABIE41_RS06310at 1301.693 kb on - strand, within ABIE41_RS06310at 1301.693 kb on - strand, within ABIE41_RS06310at 1301.736 kb on + strand, within ABIE41_RS06310at 1301.736 kb on + strand, within ABIE41_RS06310at 1301.736 kb on + strand, within ABIE41_RS06310at 1301.736 kb on + strand, within ABIE41_RS06310at 1301.736 kb on + strand, within ABIE41_RS06310at 1301.736 kb on + strand, within ABIE41_RS06310at 1301.737 kb on - strand, within ABIE41_RS06310at 1301.880 kb on - strandat 1301.937 kb on - strandat 1301.937 kb on - strandat 1301.937 kb on - strandat 1301.938 kb on + strandat 1301.938 kb on + strandat 1301.939 kb on - strandat 1301.944 kb on + strandat 1301.944 kb on + strandat 1301.944 kb on + strandat 1301.945 kb on - strandat 1301.950 kb on + strandat 1301.950 kb on + strandat 1302.169 kb on - strand, within ABIE41_RS06315at 1302.292 kb on + strand, within ABIE41_RS06315at 1302.293 kb on - strand, within ABIE41_RS06315at 1302.421 kb on + strand, within ABIE41_RS06315at 1302.421 kb on + strand, within ABIE41_RS06315at 1302.421 kb on + strand, within ABIE41_RS06315at 1302.422 kb on - strand, within ABIE41_RS06315at 1302.422 kb on - strand, within ABIE41_RS06315at 1302.422 kb on - strand, within ABIE41_RS06315at 1302.422 kb on - strand, within ABIE41_RS06315at 1302.422 kb on - strand, within ABIE41_RS06315at 1302.422 kb on - strand, within ABIE41_RS06315at 1302.680 kb on - strand, within ABIE41_RS06315at 1302.790 kb on + strand, within ABIE41_RS06315at 1302.825 kb on - strand, within ABIE41_RS06315at 1303.046 kb on + strand, within ABIE41_RS06320at 1303.046 kb on + strand, within ABIE41_RS06320at 1303.047 kb on - strand, within ABIE41_RS06320at 1303.047 kb on - strand, within ABIE41_RS06320at 1303.047 kb on - strand, within ABIE41_RS06320at 1303.047 kb on - strand, within ABIE41_RS06320at 1303.136 kb on + strand, within ABIE41_RS06320at 1303.137 kb on - strand, within ABIE41_RS06320at 1303.652 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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1,301,009 + ABIE41_RS06305 0.74 +2.1
1,301,009 + ABIE41_RS06305 0.74 -0.1
1,301,009 + ABIE41_RS06305 0.74 +0.4
1,301,009 + ABIE41_RS06305 0.74 -0.5
1,301,009 + ABIE41_RS06305 0.74 +0.4
1,301,009 + ABIE41_RS06305 0.74 +1.8
1,301,009 + ABIE41_RS06305 0.74 +0.0
1,301,009 + ABIE41_RS06305 0.74 +0.4
1,301,009 + ABIE41_RS06305 0.74 -0.3
1,301,009 + ABIE41_RS06305 0.74 +0.5
1,301,009 + ABIE41_RS06305 0.74 +0.1
1,301,009 + ABIE41_RS06305 0.74 +0.2
1,301,009 + ABIE41_RS06305 0.74 -0.5
1,301,009 + ABIE41_RS06305 0.74 +0.2
1,301,009 + ABIE41_RS06305 0.74 +0.2
1,301,009 + ABIE41_RS06305 0.74 -0.3
1,301,009 + ABIE41_RS06305 0.74 +0.2
1,301,009 + ABIE41_RS06305 0.74 -0.3
1,301,010 - ABIE41_RS06305 0.74 +0.4
1,301,010 - ABIE41_RS06305 0.74 -0.0
1,301,010 - ABIE41_RS06305 0.74 -0.2
1,301,010 - ABIE41_RS06305 0.74 -0.5
1,301,010 - ABIE41_RS06305 0.74 +1.2
1,301,010 - ABIE41_RS06305 0.74 +1.4
1,301,010 - ABIE41_RS06305 0.74 -0.3
1,301,010 - ABIE41_RS06305 0.74 +0.0
1,301,010 - ABIE41_RS06305 0.74 +0.6
1,301,099 + ABIE41_RS06305 0.79 -0.2
1,301,099 + ABIE41_RS06305 0.79 +0.2
1,301,099 + ABIE41_RS06305 0.79 -0.8
1,301,099 + ABIE41_RS06305 0.79 +0.0
1,301,100 - ABIE41_RS06305 0.79 -0.2
1,301,100 - ABIE41_RS06305 0.79 -0.4
1,301,121 - ABIE41_RS06305 0.80 -0.4
1,301,150 + ABIE41_RS06305 0.81 -0.6
1,301,150 + ABIE41_RS06305 0.81 -0.0
1,301,150 + ABIE41_RS06305 0.81 -0.8
1,301,150 + ABIE41_RS06305 0.81 +0.9
1,301,150 + ABIE41_RS06305 0.81 +0.2
1,301,150 + ABIE41_RS06305 0.81 -0.5
1,301,151 - ABIE41_RS06305 0.81 -0.0
1,301,151 - ABIE41_RS06305 0.81 +0.2
1,301,151 - ABIE41_RS06305 0.81 +0.1
1,301,151 - ABIE41_RS06305 0.81 +0.1
1,301,151 - ABIE41_RS06305 0.81 -0.0
1,301,190 - ABIE41_RS06305 0.83 +0.2
1,301,201 + ABIE41_RS06305 0.84 -1.1
1,301,201 + ABIE41_RS06305 0.84 +1.3
1,301,201 + ABIE41_RS06305 0.84 -0.3
1,301,202 - ABIE41_RS06305 0.84 +3.1
1,301,202 - ABIE41_RS06305 0.84 +0.1
1,301,270 + ABIE41_RS06305 0.87 +0.1
1,301,270 + ABIE41_RS06305 0.87 -0.5
1,301,270 + ABIE41_RS06305 0.87 +0.1
1,301,270 + ABIE41_RS06305 0.87 +0.3
1,301,270 + ABIE41_RS06305 0.87 +0.5
1,301,271 - ABIE41_RS06305 0.87 -1.8
1,301,300 + ABIE41_RS06305 0.89 +0.3
1,301,300 + ABIE41_RS06305 0.89 +0.1
1,301,300 + ABIE41_RS06305 0.89 -1.3
1,301,300 + ABIE41_RS06305 0.89 +0.4
1,301,300 + ABIE41_RS06305 0.89 +0.2
1,301,300 + ABIE41_RS06305 0.89 +0.3
1,301,301 - ABIE41_RS06305 0.89 +0.0
1,301,301 - ABIE41_RS06305 0.89 -0.3
1,301,301 - ABIE41_RS06305 0.89 -0.8
1,301,301 - ABIE41_RS06305 0.89 -0.4
1,301,302 - ABIE41_RS06305 0.89 -0.4
1,301,303 + ABIE41_RS06305 0.89 -2.0
1,301,303 + ABIE41_RS06305 0.89 -0.1
1,301,304 - ABIE41_RS06305 0.89 +0.1
1,301,348 + -1.2
1,301,348 + +0.1
1,301,348 + +0.1
1,301,348 + -0.4
1,301,348 + +1.1
1,301,348 + -0.3
1,301,349 - -0.1
1,301,349 - +0.5
1,301,379 - +0.0
1,301,454 + -0.2
1,301,457 - +0.5
1,301,457 - -0.7
1,301,457 - +0.1
1,301,465 + -0.2
1,301,465 + +0.3
1,301,465 + +0.2
1,301,553 + -0.6
1,301,553 + -0.2
1,301,554 - -0.8
1,301,554 - +0.8
1,301,609 + ABIE41_RS06310 0.30 +0.4
1,301,610 - ABIE41_RS06310 0.30 +0.2
1,301,610 - ABIE41_RS06310 0.30 -0.5
1,301,636 - ABIE41_RS06310 0.40 +1.0
1,301,637 + ABIE41_RS06310 0.41 +1.5
1,301,637 + ABIE41_RS06310 0.41 -1.6
1,301,637 + ABIE41_RS06310 0.41 -0.3
1,301,637 + ABIE41_RS06310 0.41 -0.4
1,301,692 + ABIE41_RS06310 0.62 -0.4
1,301,692 + ABIE41_RS06310 0.62 +0.1
1,301,692 + ABIE41_RS06310 0.62 +0.3
1,301,693 - ABIE41_RS06310 0.62 +0.8
1,301,693 - ABIE41_RS06310 0.62 -0.2
1,301,693 - ABIE41_RS06310 0.62 +0.2
1,301,693 - ABIE41_RS06310 0.62 +0.5
1,301,693 - ABIE41_RS06310 0.62 -1.0
1,301,736 + ABIE41_RS06310 0.79 +1.7
1,301,736 + ABIE41_RS06310 0.79 +0.3
1,301,736 + ABIE41_RS06310 0.79 +1.4
1,301,736 + ABIE41_RS06310 0.79 +1.5
1,301,736 + ABIE41_RS06310 0.79 +0.7
1,301,736 + ABIE41_RS06310 0.79 +1.2
1,301,737 - ABIE41_RS06310 0.79 -0.0
1,301,880 - +0.9
1,301,937 - +0.1
1,301,937 - -1.1
1,301,937 - +1.3
1,301,938 + +2.0
1,301,938 + -0.4
1,301,939 - +1.6
1,301,944 + -0.0
1,301,944 + +0.6
1,301,944 + +1.0
1,301,945 - -1.0
1,301,950 + -1.1
1,301,950 + -0.4
1,302,169 - ABIE41_RS06315 0.23 -0.7
1,302,292 + ABIE41_RS06315 0.35 +0.2
1,302,293 - ABIE41_RS06315 0.35 -0.5
1,302,421 + ABIE41_RS06315 0.48 -1.1
1,302,421 + ABIE41_RS06315 0.48 -0.9
1,302,421 + ABIE41_RS06315 0.48 +0.5
1,302,422 - ABIE41_RS06315 0.48 +0.2
1,302,422 - ABIE41_RS06315 0.48 +1.1
1,302,422 - ABIE41_RS06315 0.48 -0.0
1,302,422 - ABIE41_RS06315 0.48 -0.1
1,302,422 - ABIE41_RS06315 0.48 -0.1
1,302,422 - ABIE41_RS06315 0.48 -0.0
1,302,680 - ABIE41_RS06315 0.74 +0.4
1,302,790 + ABIE41_RS06315 0.86 -1.0
1,302,825 - ABIE41_RS06315 0.89 -0.7
1,303,046 + ABIE41_RS06320 0.11 -0.2
1,303,046 + ABIE41_RS06320 0.11 -0.5
1,303,047 - ABIE41_RS06320 0.11 +0.1
1,303,047 - ABIE41_RS06320 0.11 -0.3
1,303,047 - ABIE41_RS06320 0.11 -0.5
1,303,047 - ABIE41_RS06320 0.11 +0.7
1,303,136 + ABIE41_RS06320 0.24 +0.1
1,303,137 - ABIE41_RS06320 0.24 -0.4
1,303,652 + +0.1

Or see this region's nucleotide sequence