Strain Fitness in Bosea sp. OAE506 around ABIE41_RS06205

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS06195 and ABIE41_RS06200 are separated by 22 nucleotidesABIE41_RS06200 and ABIE41_RS06205 overlap by 4 nucleotidesABIE41_RS06205 and ABIE41_RS06210 are separated by 336 nucleotidesABIE41_RS06210 and ABIE41_RS06215 are separated by 99 nucleotides ABIE41_RS06195: ABIE41_RS06195 - class I SAM-dependent methyltransferase, at 1,279,493 to 1,280,350 _RS06195 ABIE41_RS06200: ABIE41_RS06200 - ABC transporter permease, at 1,280,373 to 1,281,167 _RS06200 ABIE41_RS06205: ABIE41_RS06205 - ABC transporter ATP-binding protein, at 1,281,164 to 1,282,090 _RS06205 ABIE41_RS06210: ABIE41_RS06210 - hypothetical protein, at 1,282,427 to 1,282,933 _RS06210 ABIE41_RS06215: ABIE41_RS06215 - hypothetical protein, at 1,283,033 to 1,283,656 _RS06215 Position (kb) 1281 1282 1283Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1280.260 kb on + strand, within ABIE41_RS06195at 1280.519 kb on - strand, within ABIE41_RS06200at 1280.578 kb on + strand, within ABIE41_RS06200at 1280.579 kb on - strand, within ABIE41_RS06200at 1280.579 kb on - strand, within ABIE41_RS06200at 1280.818 kb on + strand, within ABIE41_RS06200at 1280.818 kb on + strand, within ABIE41_RS06200at 1280.818 kb on + strand, within ABIE41_RS06200at 1280.866 kb on + strand, within ABIE41_RS06200at 1280.866 kb on + strand, within ABIE41_RS06200at 1280.867 kb on - strand, within ABIE41_RS06200at 1280.867 kb on - strand, within ABIE41_RS06200at 1280.879 kb on + strand, within ABIE41_RS06200at 1280.893 kb on + strand, within ABIE41_RS06200at 1280.893 kb on + strand, within ABIE41_RS06200at 1280.893 kb on + strand, within ABIE41_RS06200at 1280.893 kb on + strand, within ABIE41_RS06200at 1280.893 kb on + strand, within ABIE41_RS06200at 1280.893 kb on + strand, within ABIE41_RS06200at 1280.894 kb on - strand, within ABIE41_RS06200at 1280.894 kb on - strand, within ABIE41_RS06200at 1280.894 kb on - strand, within ABIE41_RS06200at 1280.894 kb on - strand, within ABIE41_RS06200at 1281.031 kb on + strand, within ABIE41_RS06200at 1281.032 kb on - strand, within ABIE41_RS06200at 1281.106 kb on + strandat 1281.106 kb on + strandat 1281.106 kb on + strandat 1281.107 kb on - strandat 1281.107 kb on - strandat 1281.107 kb on - strandat 1281.107 kb on - strandat 1281.107 kb on - strandat 1281.107 kb on - strandat 1281.107 kb on - strandat 1281.303 kb on + strand, within ABIE41_RS06205at 1281.303 kb on + strand, within ABIE41_RS06205at 1281.303 kb on + strand, within ABIE41_RS06205at 1281.303 kb on + strand, within ABIE41_RS06205at 1281.303 kb on + strand, within ABIE41_RS06205at 1281.303 kb on + strand, within ABIE41_RS06205at 1281.304 kb on - strand, within ABIE41_RS06205at 1281.304 kb on - strand, within ABIE41_RS06205at 1281.304 kb on - strand, within ABIE41_RS06205at 1281.304 kb on - strand, within ABIE41_RS06205at 1281.304 kb on - strand, within ABIE41_RS06205at 1281.304 kb on - strand, within ABIE41_RS06205at 1281.304 kb on - strand, within ABIE41_RS06205at 1281.304 kb on - strand, within ABIE41_RS06205at 1281.513 kb on + strand, within ABIE41_RS06205at 1281.513 kb on + strand, within ABIE41_RS06205at 1281.513 kb on + strand, within ABIE41_RS06205at 1281.513 kb on + strand, within ABIE41_RS06205at 1281.513 kb on + strand, within ABIE41_RS06205at 1281.513 kb on + strand, within ABIE41_RS06205at 1281.514 kb on - strand, within ABIE41_RS06205at 1281.514 kb on - strand, within ABIE41_RS06205at 1281.514 kb on - strand, within ABIE41_RS06205at 1281.514 kb on - strand, within ABIE41_RS06205at 1281.514 kb on - strand, within ABIE41_RS06205at 1281.514 kb on - strand, within ABIE41_RS06205at 1281.514 kb on - strand, within ABIE41_RS06205at 1281.514 kb on - strand, within ABIE41_RS06205at 1281.873 kb on + strand, within ABIE41_RS06205at 1281.873 kb on + strand, within ABIE41_RS06205at 1282.050 kb on + strandat 1282.050 kb on + strandat 1282.050 kb on + strandat 1282.050 kb on + strandat 1282.050 kb on + strandat 1282.050 kb on + strandat 1282.050 kb on + strandat 1282.051 kb on - strandat 1282.051 kb on - strandat 1282.051 kb on - strandat 1282.051 kb on - strandat 1282.051 kb on - strandat 1282.051 kb on - strandat 1282.051 kb on - strandat 1282.051 kb on - strandat 1282.051 kb on - strandat 1282.051 kb on - strandat 1282.051 kb on - strandat 1282.099 kb on + strandat 1282.100 kb on - strandat 1282.100 kb on - strandat 1282.100 kb on - strandat 1282.101 kb on + strandat 1282.101 kb on + strandat 1282.101 kb on + strandat 1282.101 kb on + strandat 1282.101 kb on + strandat 1282.101 kb on + strandat 1282.101 kb on + strandat 1282.101 kb on + strandat 1282.102 kb on - strandat 1282.102 kb on - strandat 1282.102 kb on - strandat 1282.102 kb on - strandat 1282.102 kb on - strandat 1282.102 kb on - strandat 1282.103 kb on - strandat 1282.168 kb on + strandat 1282.169 kb on - strandat 1282.283 kb on + strandat 1282.283 kb on + strandat 1282.283 kb on + strandat 1282.283 kb on + strandat 1282.284 kb on - strandat 1282.284 kb on - strandat 1282.428 kb on + strandat 1282.429 kb on - strandat 1282.503 kb on + strand, within ABIE41_RS06210at 1282.503 kb on + strand, within ABIE41_RS06210at 1282.503 kb on + strand, within ABIE41_RS06210at 1282.504 kb on - strand, within ABIE41_RS06210at 1282.504 kb on - strand, within ABIE41_RS06210at 1282.504 kb on - strand, within ABIE41_RS06210at 1282.554 kb on + strand, within ABIE41_RS06210at 1282.554 kb on + strand, within ABIE41_RS06210at 1282.555 kb on - strand, within ABIE41_RS06210at 1282.555 kb on - strand, within ABIE41_RS06210at 1282.600 kb on + strand, within ABIE41_RS06210at 1282.601 kb on - strand, within ABIE41_RS06210at 1282.680 kb on + strand, within ABIE41_RS06210at 1282.681 kb on - strand, within ABIE41_RS06210at 1282.681 kb on - strand, within ABIE41_RS06210at 1282.681 kb on - strand, within ABIE41_RS06210at 1282.681 kb on - strand, within ABIE41_RS06210at 1282.743 kb on + strand, within ABIE41_RS06210at 1282.743 kb on + strand, within ABIE41_RS06210at 1282.743 kb on + strand, within ABIE41_RS06210at 1282.743 kb on + strand, within ABIE41_RS06210at 1282.743 kb on + strand, within ABIE41_RS06210at 1282.743 kb on + strand, within ABIE41_RS06210at 1282.743 kb on + strand, within ABIE41_RS06210at 1282.743 kb on + strand, within ABIE41_RS06210at 1282.743 kb on + strand, within ABIE41_RS06210at 1282.743 kb on + strand, within ABIE41_RS06210at 1282.743 kb on + strand, within ABIE41_RS06210at 1282.743 kb on + strand, within ABIE41_RS06210at 1282.743 kb on + strand, within ABIE41_RS06210at 1282.743 kb on + strand, within ABIE41_RS06210at 1282.743 kb on + strand, within ABIE41_RS06210at 1282.743 kb on + strand, within ABIE41_RS06210at 1282.743 kb on + strand, within ABIE41_RS06210at 1282.743 kb on + strand, within ABIE41_RS06210at 1282.743 kb on + strand, within ABIE41_RS06210at 1282.743 kb on + strand, within ABIE41_RS06210at 1282.743 kb on + strand, within ABIE41_RS06210at 1282.744 kb on - strand, within ABIE41_RS06210at 1282.744 kb on - strand, within ABIE41_RS06210at 1282.744 kb on - strand, within ABIE41_RS06210at 1282.744 kb on - strand, within ABIE41_RS06210at 1282.744 kb on - strand, within ABIE41_RS06210at 1282.744 kb on - strand, within ABIE41_RS06210at 1282.744 kb on - strand, within ABIE41_RS06210at 1282.744 kb on - strand, within ABIE41_RS06210at 1282.744 kb on - strand, within ABIE41_RS06210at 1282.744 kb on - strand, within ABIE41_RS06210at 1282.744 kb on - strand, within ABIE41_RS06210at 1282.744 kb on - strand, within ABIE41_RS06210at 1282.744 kb on - strand, within ABIE41_RS06210at 1282.744 kb on - strand, within ABIE41_RS06210at 1282.744 kb on - strand, within ABIE41_RS06210at 1282.744 kb on - strand, within ABIE41_RS06210at 1282.744 kb on - strand, within ABIE41_RS06210at 1282.744 kb on - strand, within ABIE41_RS06210

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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1,280,260 + ABIE41_RS06195 0.89 +0.2
1,280,519 - ABIE41_RS06200 0.18 +0.3
1,280,578 + ABIE41_RS06200 0.26 -0.3
1,280,579 - ABIE41_RS06200 0.26 -0.1
1,280,579 - ABIE41_RS06200 0.26 +0.3
1,280,818 + ABIE41_RS06200 0.56 -0.0
1,280,818 + ABIE41_RS06200 0.56 +1.6
1,280,818 + ABIE41_RS06200 0.56 -0.2
1,280,866 + ABIE41_RS06200 0.62 -0.3
1,280,866 + ABIE41_RS06200 0.62 -0.9
1,280,867 - ABIE41_RS06200 0.62 -1.1
1,280,867 - ABIE41_RS06200 0.62 -0.9
1,280,879 + ABIE41_RS06200 0.64 -0.8
1,280,893 + ABIE41_RS06200 0.65 +0.2
1,280,893 + ABIE41_RS06200 0.65 +0.0
1,280,893 + ABIE41_RS06200 0.65 -0.9
1,280,893 + ABIE41_RS06200 0.65 +0.4
1,280,893 + ABIE41_RS06200 0.65 +0.5
1,280,893 + ABIE41_RS06200 0.65 -0.3
1,280,894 - ABIE41_RS06200 0.66 -0.4
1,280,894 - ABIE41_RS06200 0.66 +0.0
1,280,894 - ABIE41_RS06200 0.66 +0.0
1,280,894 - ABIE41_RS06200 0.66 +0.8
1,281,031 + ABIE41_RS06200 0.83 +0.6
1,281,032 - ABIE41_RS06200 0.83 +1.2
1,281,106 + +0.0
1,281,106 + +0.0
1,281,106 + -0.6
1,281,107 - +0.2
1,281,107 - +1.4
1,281,107 - -0.3
1,281,107 - -0.6
1,281,107 - -0.1
1,281,107 - +0.1
1,281,107 - -2.0
1,281,303 + ABIE41_RS06205 0.15 +1.2
1,281,303 + ABIE41_RS06205 0.15 +0.2
1,281,303 + ABIE41_RS06205 0.15 -0.1
1,281,303 + ABIE41_RS06205 0.15 -0.3
1,281,303 + ABIE41_RS06205 0.15 +0.0
1,281,303 + ABIE41_RS06205 0.15 +0.1
1,281,304 - ABIE41_RS06205 0.15 +0.4
1,281,304 - ABIE41_RS06205 0.15 -1.2
1,281,304 - ABIE41_RS06205 0.15 -1.1
1,281,304 - ABIE41_RS06205 0.15 +1.0
1,281,304 - ABIE41_RS06205 0.15 +0.3
1,281,304 - ABIE41_RS06205 0.15 +0.8
1,281,304 - ABIE41_RS06205 0.15 +0.3
1,281,304 - ABIE41_RS06205 0.15 +1.1
1,281,513 + ABIE41_RS06205 0.38 +1.2
1,281,513 + ABIE41_RS06205 0.38 +0.1
1,281,513 + ABIE41_RS06205 0.38 +0.3
1,281,513 + ABIE41_RS06205 0.38 -0.0
1,281,513 + ABIE41_RS06205 0.38 +0.4
1,281,513 + ABIE41_RS06205 0.38 +0.8
1,281,514 - ABIE41_RS06205 0.38 -0.1
1,281,514 - ABIE41_RS06205 0.38 +0.4
1,281,514 - ABIE41_RS06205 0.38 -1.1
1,281,514 - ABIE41_RS06205 0.38 +1.6
1,281,514 - ABIE41_RS06205 0.38 -1.4
1,281,514 - ABIE41_RS06205 0.38 +0.5
1,281,514 - ABIE41_RS06205 0.38 +1.3
1,281,514 - ABIE41_RS06205 0.38 -0.5
1,281,873 + ABIE41_RS06205 0.76 +1.5
1,281,873 + ABIE41_RS06205 0.76 +0.8
1,282,050 + +1.0
1,282,050 + -0.3
1,282,050 + +0.3
1,282,050 + -1.1
1,282,050 + +0.6
1,282,050 + +0.2
1,282,050 + -0.5
1,282,051 - -1.2
1,282,051 - +0.8
1,282,051 - -0.1
1,282,051 - +0.5
1,282,051 - +0.2
1,282,051 - +0.3
1,282,051 - -1.1
1,282,051 - +2.5
1,282,051 - -0.7
1,282,051 - +1.2
1,282,051 - -0.4
1,282,099 + +1.8
1,282,100 - +0.2
1,282,100 - -0.4
1,282,100 - -0.1
1,282,101 + -1.0
1,282,101 + +0.9
1,282,101 + -0.3
1,282,101 + +0.4
1,282,101 + +2.0
1,282,101 + -0.9
1,282,101 + -0.5
1,282,101 + -0.4
1,282,102 - -0.7
1,282,102 - +1.8
1,282,102 - -1.2
1,282,102 - -0.8
1,282,102 - -0.1
1,282,102 - +0.7
1,282,103 - +0.2
1,282,168 + -0.1
1,282,169 - +0.6
1,282,283 + +0.4
1,282,283 + +0.2
1,282,283 + +0.2
1,282,283 + -0.3
1,282,284 - +1.2
1,282,284 - -1.2
1,282,428 + -0.3
1,282,429 - +0.6
1,282,503 + ABIE41_RS06210 0.15 -0.1
1,282,503 + ABIE41_RS06210 0.15 +0.3
1,282,503 + ABIE41_RS06210 0.15 +0.5
1,282,504 - ABIE41_RS06210 0.15 -0.2
1,282,504 - ABIE41_RS06210 0.15 -0.6
1,282,504 - ABIE41_RS06210 0.15 +0.3
1,282,554 + ABIE41_RS06210 0.25 +0.4
1,282,554 + ABIE41_RS06210 0.25 +0.2
1,282,555 - ABIE41_RS06210 0.25 -1.0
1,282,555 - ABIE41_RS06210 0.25 -1.4
1,282,600 + ABIE41_RS06210 0.34 -0.3
1,282,601 - ABIE41_RS06210 0.34 -0.6
1,282,680 + ABIE41_RS06210 0.50 +0.2
1,282,681 - ABIE41_RS06210 0.50 -1.4
1,282,681 - ABIE41_RS06210 0.50 -0.7
1,282,681 - ABIE41_RS06210 0.50 +0.5
1,282,681 - ABIE41_RS06210 0.50 -0.3
1,282,743 + ABIE41_RS06210 0.62 +0.3
1,282,743 + ABIE41_RS06210 0.62 -0.3
1,282,743 + ABIE41_RS06210 0.62 +0.3
1,282,743 + ABIE41_RS06210 0.62 +0.2
1,282,743 + ABIE41_RS06210 0.62 -0.4
1,282,743 + ABIE41_RS06210 0.62 +0.2
1,282,743 + ABIE41_RS06210 0.62 +0.0
1,282,743 + ABIE41_RS06210 0.62 -0.0
1,282,743 + ABIE41_RS06210 0.62 -0.5
1,282,743 + ABIE41_RS06210 0.62 -0.4
1,282,743 + ABIE41_RS06210 0.62 +0.1
1,282,743 + ABIE41_RS06210 0.62 -1.5
1,282,743 + ABIE41_RS06210 0.62 -0.9
1,282,743 + ABIE41_RS06210 0.62 -0.3
1,282,743 + ABIE41_RS06210 0.62 -0.8
1,282,743 + ABIE41_RS06210 0.62 +0.6
1,282,743 + ABIE41_RS06210 0.62 -0.5
1,282,743 + ABIE41_RS06210 0.62 -0.6
1,282,743 + ABIE41_RS06210 0.62 +0.3
1,282,743 + ABIE41_RS06210 0.62 +0.8
1,282,743 + ABIE41_RS06210 0.62 -0.1
1,282,744 - ABIE41_RS06210 0.63 +0.8
1,282,744 - ABIE41_RS06210 0.63 -0.2
1,282,744 - ABIE41_RS06210 0.63 +4.8
1,282,744 - ABIE41_RS06210 0.63 +0.6
1,282,744 - ABIE41_RS06210 0.63 +0.4
1,282,744 - ABIE41_RS06210 0.63 -0.2
1,282,744 - ABIE41_RS06210 0.63 +0.3
1,282,744 - ABIE41_RS06210 0.63 +3.1
1,282,744 - ABIE41_RS06210 0.63 -1.5
1,282,744 - ABIE41_RS06210 0.63 -0.0
1,282,744 - ABIE41_RS06210 0.63 -1.0
1,282,744 - ABIE41_RS06210 0.63 +0.9
1,282,744 - ABIE41_RS06210 0.63 -0.1
1,282,744 - ABIE41_RS06210 0.63 +0.5
1,282,744 - ABIE41_RS06210 0.63 -0.9
1,282,744 - ABIE41_RS06210 0.63 +0.2
1,282,744 - ABIE41_RS06210 0.63 -0.4
1,282,744 - ABIE41_RS06210 0.63 +0.3

Or see this region's nucleotide sequence