Strain Fitness in Bosea sp. OAE506 around ABIE41_RS06030

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS06020 and ABIE41_RS06025 are separated by 128 nucleotidesABIE41_RS06025 and ABIE41_RS06030 are separated by 13 nucleotidesABIE41_RS06030 and ABIE41_RS06035 overlap by 1 nucleotidesABIE41_RS06035 and ABIE41_RS06040 are separated by 119 nucleotides ABIE41_RS06020: ABIE41_RS06020 - methyltransferase domain-containing protein, at 1,242,078 to 1,242,845 _RS06020 ABIE41_RS06025: ABIE41_RS06025 - hydroxyacylglutathione hydrolase, at 1,242,974 to 1,243,738 _RS06025 ABIE41_RS06030: ABIE41_RS06030 - cupin domain-containing protein, at 1,243,752 to 1,244,210 _RS06030 ABIE41_RS06035: ABIE41_RS06035 - GNAT family N-acetyltransferase, at 1,244,210 to 1,244,977 _RS06035 ABIE41_RS06040: ABIE41_RS06040 - amidohydrolase family protein, at 1,245,097 to 1,246,332 _RS06040 Position (kb) 1243 1244 1245Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1242.811 kb on + strandat 1242.811 kb on + strandat 1242.811 kb on + strandat 1242.811 kb on + strandat 1242.812 kb on - strandat 1242.812 kb on - strandat 1242.812 kb on - strandat 1242.939 kb on - strandat 1243.300 kb on + strand, within ABIE41_RS06025at 1243.300 kb on + strand, within ABIE41_RS06025at 1243.300 kb on + strand, within ABIE41_RS06025at 1243.300 kb on + strand, within ABIE41_RS06025at 1243.300 kb on + strand, within ABIE41_RS06025at 1243.300 kb on + strand, within ABIE41_RS06025at 1243.487 kb on + strand, within ABIE41_RS06025at 1243.487 kb on + strand, within ABIE41_RS06025at 1243.487 kb on + strand, within ABIE41_RS06025at 1243.487 kb on + strand, within ABIE41_RS06025at 1243.487 kb on + strand, within ABIE41_RS06025at 1243.487 kb on + strand, within ABIE41_RS06025at 1243.488 kb on - strand, within ABIE41_RS06025at 1243.488 kb on - strand, within ABIE41_RS06025at 1243.488 kb on - strand, within ABIE41_RS06025at 1243.488 kb on - strand, within ABIE41_RS06025at 1243.488 kb on - strand, within ABIE41_RS06025at 1243.488 kb on - strand, within ABIE41_RS06025at 1243.488 kb on - strand, within ABIE41_RS06025at 1243.488 kb on - strand, within ABIE41_RS06025at 1243.488 kb on - strand, within ABIE41_RS06025at 1243.488 kb on - strand, within ABIE41_RS06025at 1243.488 kb on - strand, within ABIE41_RS06025at 1243.827 kb on + strand, within ABIE41_RS06030at 1243.828 kb on - strand, within ABIE41_RS06030at 1243.887 kb on + strand, within ABIE41_RS06030at 1243.887 kb on + strand, within ABIE41_RS06030at 1243.887 kb on + strand, within ABIE41_RS06030at 1243.888 kb on - strand, within ABIE41_RS06030at 1243.888 kb on - strand, within ABIE41_RS06030at 1243.888 kb on - strand, within ABIE41_RS06030at 1243.888 kb on - strand, within ABIE41_RS06030at 1243.890 kb on + strand, within ABIE41_RS06030at 1243.890 kb on + strand, within ABIE41_RS06030at 1243.891 kb on - strand, within ABIE41_RS06030at 1243.891 kb on - strand, within ABIE41_RS06030at 1243.891 kb on - strand, within ABIE41_RS06030at 1243.956 kb on + strand, within ABIE41_RS06030at 1243.957 kb on - strand, within ABIE41_RS06030at 1243.957 kb on - strand, within ABIE41_RS06030at 1244.498 kb on + strand, within ABIE41_RS06035at 1244.499 kb on - strand, within ABIE41_RS06035at 1244.499 kb on - strand, within ABIE41_RS06035at 1244.499 kb on - strand, within ABIE41_RS06035at 1244.729 kb on + strand, within ABIE41_RS06035at 1244.871 kb on - strand, within ABIE41_RS06035at 1244.871 kb on - strand, within ABIE41_RS06035at 1244.871 kb on - strand, within ABIE41_RS06035at 1244.912 kb on + strandat 1244.913 kb on - strandat 1244.939 kb on + strandat 1244.940 kb on - strandat 1244.945 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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1,242,811 + -0.3
1,242,811 + -0.9
1,242,811 + +0.9
1,242,811 + -0.3
1,242,812 - +0.5
1,242,812 - +0.4
1,242,812 - +0.6
1,242,939 - -0.6
1,243,300 + ABIE41_RS06025 0.43 +3.8
1,243,300 + ABIE41_RS06025 0.43 +0.2
1,243,300 + ABIE41_RS06025 0.43 +0.1
1,243,300 + ABIE41_RS06025 0.43 +1.6
1,243,300 + ABIE41_RS06025 0.43 -1.8
1,243,300 + ABIE41_RS06025 0.43 +0.3
1,243,487 + ABIE41_RS06025 0.67 -0.6
1,243,487 + ABIE41_RS06025 0.67 +0.5
1,243,487 + ABIE41_RS06025 0.67 -1.0
1,243,487 + ABIE41_RS06025 0.67 +0.2
1,243,487 + ABIE41_RS06025 0.67 +0.2
1,243,487 + ABIE41_RS06025 0.67 +0.5
1,243,488 - ABIE41_RS06025 0.67 +0.6
1,243,488 - ABIE41_RS06025 0.67 -0.2
1,243,488 - ABIE41_RS06025 0.67 -0.0
1,243,488 - ABIE41_RS06025 0.67 -0.3
1,243,488 - ABIE41_RS06025 0.67 +0.9
1,243,488 - ABIE41_RS06025 0.67 +0.3
1,243,488 - ABIE41_RS06025 0.67 +0.6
1,243,488 - ABIE41_RS06025 0.67 +0.3
1,243,488 - ABIE41_RS06025 0.67 +0.3
1,243,488 - ABIE41_RS06025 0.67 +0.1
1,243,488 - ABIE41_RS06025 0.67 +0.4
1,243,827 + ABIE41_RS06030 0.16 +1.0
1,243,828 - ABIE41_RS06030 0.17 +0.2
1,243,887 + ABIE41_RS06030 0.29 +0.8
1,243,887 + ABIE41_RS06030 0.29 +0.2
1,243,887 + ABIE41_RS06030 0.29 +1.0
1,243,888 - ABIE41_RS06030 0.30 +0.2
1,243,888 - ABIE41_RS06030 0.30 +0.6
1,243,888 - ABIE41_RS06030 0.30 -0.2
1,243,888 - ABIE41_RS06030 0.30 -0.5
1,243,890 + ABIE41_RS06030 0.30 -0.5
1,243,890 + ABIE41_RS06030 0.30 -0.8
1,243,891 - ABIE41_RS06030 0.30 +0.7
1,243,891 - ABIE41_RS06030 0.30 +0.1
1,243,891 - ABIE41_RS06030 0.30 +0.0
1,243,956 + ABIE41_RS06030 0.44 +1.1
1,243,957 - ABIE41_RS06030 0.45 -1.1
1,243,957 - ABIE41_RS06030 0.45 +0.6
1,244,498 + ABIE41_RS06035 0.38 -0.5
1,244,499 - ABIE41_RS06035 0.38 +4.1
1,244,499 - ABIE41_RS06035 0.38 +0.5
1,244,499 - ABIE41_RS06035 0.38 +0.5
1,244,729 + ABIE41_RS06035 0.68 -0.1
1,244,871 - ABIE41_RS06035 0.86 -0.2
1,244,871 - ABIE41_RS06035 0.86 -0.2
1,244,871 - ABIE41_RS06035 0.86 +0.8
1,244,912 + -0.2
1,244,913 - +1.4
1,244,939 + -0.1
1,244,940 - -0.8
1,244,945 + +0.2

Or see this region's nucleotide sequence