Strain Fitness in Bosea sp. OAE506 around ABIE41_RS04970

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS04965 and ABIE41_RS04970 are separated by 233 nucleotidesABIE41_RS04970 and ABIE41_RS04975 overlap by 4 nucleotidesABIE41_RS04975 and ABIE41_RS04980 are separated by 2 nucleotides ABIE41_RS04965: ABIE41_RS04965 - aconitate hydratase AcnA, at 1,033,224 to 1,035,923 _RS04965 ABIE41_RS04970: ABIE41_RS04970 - heme ABC exporter ATP-binding protein CcmA, at 1,036,157 to 1,036,777 _RS04970 ABIE41_RS04975: ABIE41_RS04975 - heme exporter protein CcmB, at 1,036,774 to 1,037,442 _RS04975 ABIE41_RS04980: ABIE41_RS04980 - hypothetical protein, at 1,037,445 to 1,037,687 _RS04980 Position (kb) 1036 1037Strain fitness (log2 ratio) -2 -1 0 1at 1035.999 kb on - strandat 1035.999 kb on - strandat 1035.999 kb on - strandat 1036.077 kb on - strandat 1036.077 kb on - strandat 1036.077 kb on - strandat 1036.077 kb on - strandat 1036.077 kb on - strandat 1036.077 kb on - strandat 1036.079 kb on - strandat 1036.079 kb on - strandat 1036.079 kb on - strandat 1036.079 kb on - strandat 1036.102 kb on - strandat 1036.102 kb on - strandat 1036.102 kb on - strandat 1037.440 kb on + strandat 1037.440 kb on + strandat 1037.440 kb on + strandat 1037.440 kb on + strandat 1037.440 kb on + strandat 1037.441 kb on - strandat 1037.567 kb on + strand, within ABIE41_RS04980at 1037.567 kb on + strand, within ABIE41_RS04980at 1037.567 kb on + strand, within ABIE41_RS04980at 1037.568 kb on - strand, within ABIE41_RS04980at 1037.568 kb on - strand, within ABIE41_RS04980at 1037.755 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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1,035,999 - +1.6
1,035,999 - +0.2
1,035,999 - -0.6
1,036,077 - -0.4
1,036,077 - +0.1
1,036,077 - +0.3
1,036,077 - +0.1
1,036,077 - +0.1
1,036,077 - -0.2
1,036,079 - +0.3
1,036,079 - +0.3
1,036,079 - +0.3
1,036,079 - -0.0
1,036,102 - +0.1
1,036,102 - -1.4
1,036,102 - -1.9
1,037,440 + +1.2
1,037,440 + -1.9
1,037,440 + -0.2
1,037,440 + +0.0
1,037,440 + +0.6
1,037,441 - -0.6
1,037,567 + ABIE41_RS04980 0.50 -1.6
1,037,567 + ABIE41_RS04980 0.50 +0.6
1,037,567 + ABIE41_RS04980 0.50 -0.0
1,037,568 - ABIE41_RS04980 0.51 -0.7
1,037,568 - ABIE41_RS04980 0.51 +0.0
1,037,755 - -0.4

Or see this region's nucleotide sequence