Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS04965 and ABIE41_RS04970 are separated by 233 nucleotides ABIE41_RS04970 and ABIE41_RS04975 overlap by 4 nucleotides ABIE41_RS04975 and ABIE41_RS04980 are separated by 2 nucleotides
ABIE41_RS04965: ABIE41_RS04965 - aconitate hydratase AcnA, at 1,033,224 to 1,035,923
_RS04965
ABIE41_RS04970: ABIE41_RS04970 - heme ABC exporter ATP-binding protein CcmA, at 1,036,157 to 1,036,777
_RS04970
ABIE41_RS04975: ABIE41_RS04975 - heme exporter protein CcmB, at 1,036,774 to 1,037,442
_RS04975
ABIE41_RS04980: ABIE41_RS04980 - hypothetical protein, at 1,037,445 to 1,037,687
_RS04980
Position (kb)
1036
1037 Strain fitness (log2 ratio)
-2
-1
0
1 at 1035.999 kb on - strand at 1035.999 kb on - strand at 1035.999 kb on - strand at 1036.077 kb on - strand at 1036.077 kb on - strand at 1036.077 kb on - strand at 1036.077 kb on - strand at 1036.077 kb on - strand at 1036.077 kb on - strand at 1036.079 kb on - strand at 1036.079 kb on - strand at 1036.079 kb on - strand at 1036.079 kb on - strand at 1036.102 kb on - strand at 1036.102 kb on - strand at 1036.102 kb on - strand at 1037.440 kb on + strand at 1037.440 kb on + strand at 1037.440 kb on + strand at 1037.440 kb on + strand at 1037.440 kb on + strand at 1037.441 kb on - strand at 1037.567 kb on + strand, within ABIE41_RS04980 at 1037.567 kb on + strand, within ABIE41_RS04980 at 1037.567 kb on + strand, within ABIE41_RS04980 at 1037.568 kb on - strand, within ABIE41_RS04980 at 1037.568 kb on - strand, within ABIE41_RS04980 at 1037.755 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 1,035,999 - +1.6 1,035,999 - +0.2 1,035,999 - -0.6 1,036,077 - -0.4 1,036,077 - +0.1 1,036,077 - +0.3 1,036,077 - +0.1 1,036,077 - +0.1 1,036,077 - -0.2 1,036,079 - +0.3 1,036,079 - +0.3 1,036,079 - +0.3 1,036,079 - -0.0 1,036,102 - +0.1 1,036,102 - -1.4 1,036,102 - -1.9 1,037,440 + +1.2 1,037,440 + -1.9 1,037,440 + -0.2 1,037,440 + +0.0 1,037,440 + +0.6 1,037,441 - -0.6 1,037,567 + ABIE41_RS04980 0.50 -1.6 1,037,567 + ABIE41_RS04980 0.50 +0.6 1,037,567 + ABIE41_RS04980 0.50 -0.0 1,037,568 - ABIE41_RS04980 0.51 -0.7 1,037,568 - ABIE41_RS04980 0.51 +0.0 1,037,755 - -0.4
Or see this region's nucleotide sequence