Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS00155 and ABIE41_RS00160 are separated by 57 nucleotides ABIE41_RS00160 and ABIE41_RS00165 are separated by 22 nucleotides ABIE41_RS00165 and ABIE41_RS00170 overlap by 1 nucleotides
ABIE41_RS00155: ABIE41_RS00155 - succinyl-diaminopimelate desuccinylase, at 24,432 to 25,635
_RS00155
ABIE41_RS00160: ABIE41_RS00160 - hypothetical protein, at 25,693 to 26,277
_RS00160
ABIE41_RS00165: ABIE41_RS00165 - tRNA pseudouridine(38-40) synthase TruA, at 26,300 to 27,037
_RS00165
ABIE41_RS00170: ABIE41_RS00170 - methionyl-tRNA formyltransferase, at 27,037 to 27,966
_RS00170
Position (kb)
26
27
28 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 25.336 kb on - strand, within ABIE41_RS00155 at 25.492 kb on - strand, within ABIE41_RS00155 at 25.492 kb on - strand, within ABIE41_RS00155 at 25.492 kb on - strand, within ABIE41_RS00155 at 25.492 kb on - strand, within ABIE41_RS00155 at 25.492 kb on - strand, within ABIE41_RS00155 at 25.493 kb on - strand, within ABIE41_RS00155 at 25.511 kb on - strand, within ABIE41_RS00155 at 25.609 kb on + strand at 25.609 kb on + strand at 25.610 kb on - strand at 25.657 kb on + strand at 25.657 kb on + strand at 25.658 kb on - strand at 25.678 kb on + strand at 25.678 kb on + strand at 25.678 kb on + strand at 25.810 kb on + strand, within ABIE41_RS00160 at 25.810 kb on + strand, within ABIE41_RS00160 at 25.811 kb on - strand, within ABIE41_RS00160 at 25.811 kb on - strand, within ABIE41_RS00160 at 26.323 kb on - strand at 26.323 kb on - strand at 26.481 kb on + strand, within ABIE41_RS00165 at 26.481 kb on + strand, within ABIE41_RS00165 at 26.482 kb on - strand, within ABIE41_RS00165 at 26.642 kb on + strand, within ABIE41_RS00165 at 26.701 kb on - strand, within ABIE41_RS00165 at 26.701 kb on - strand, within ABIE41_RS00165 at 26.706 kb on + strand, within ABIE41_RS00165 at 26.707 kb on - strand, within ABIE41_RS00165 at 26.710 kb on - strand, within ABIE41_RS00165 at 27.976 kb on - strand at 27.979 kb on - strand at 27.979 kb on - strand at 27.979 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 25,336 - ABIE41_RS00155 0.75 -0.6 25,492 - ABIE41_RS00155 0.88 +0.4 25,492 - ABIE41_RS00155 0.88 +1.3 25,492 - ABIE41_RS00155 0.88 +0.0 25,492 - ABIE41_RS00155 0.88 -1.2 25,492 - ABIE41_RS00155 0.88 -0.1 25,493 - ABIE41_RS00155 0.88 -0.6 25,511 - ABIE41_RS00155 0.90 -0.2 25,609 + -0.9 25,609 + +0.5 25,610 - -0.2 25,657 + +0.3 25,657 + +0.1 25,658 - +1.8 25,678 + -1.0 25,678 + -0.3 25,678 + -0.9 25,810 + ABIE41_RS00160 0.20 +0.3 25,810 + ABIE41_RS00160 0.20 +0.5 25,811 - ABIE41_RS00160 0.20 -0.6 25,811 - ABIE41_RS00160 0.20 -0.8 26,323 - +0.2 26,323 - -2.1 26,481 + ABIE41_RS00165 0.25 -1.8 26,481 + ABIE41_RS00165 0.25 -2.0 26,482 - ABIE41_RS00165 0.25 -1.3 26,642 + ABIE41_RS00165 0.46 -1.0 26,701 - ABIE41_RS00165 0.54 +1.2 26,701 - ABIE41_RS00165 0.54 -2.8 26,706 + ABIE41_RS00165 0.55 -1.2 26,707 - ABIE41_RS00165 0.55 -1.2 26,710 - ABIE41_RS00165 0.56 -1.0 27,976 - -0.1 27,979 - +2.6 27,979 - +0.8 27,979 - -0.1
Or see this region's nucleotide sequence