Experiment: R2A with 3-octanone 2.65516666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS19765 and ABIE41_RS19770 are separated by 19 nucleotides ABIE41_RS19770 and ABIE41_RS19775 are separated by 1 nucleotides ABIE41_RS19775 and ABIE41_RS19780 are separated by 56 nucleotides ABIE41_RS19780 and ABIE41_RS19785 are separated by 207 nucleotides
ABIE41_RS19765: ABIE41_RS19765 - transcriptional regulator NrdR, at 4,058,028 to 4,058,525
_RS19765
ABIE41_RS19770: ABIE41_RS19770 - PIN domain-containing protein, at 4,058,545 to 4,058,988
_RS19770
ABIE41_RS19775: ABIE41_RS19775 - hypothetical protein, at 4,058,990 to 4,059,223
_RS19775
ABIE41_RS19780: ABIE41_RS19780 - serine hydroxymethyltransferase, at 4,059,280 to 4,060,581
_RS19780
ABIE41_RS19785: ABIE41_RS19785 - Na+/H+ antiporter NhaA, at 4,060,789 to 4,061,994
_RS19785
Position (kb) 4059
4060
4061 Strain fitness (log2 ratio) -1
0
1
2 at 4058.576 kb on - strand at 4058.576 kb on - strand at 4059.250 kb on - strand at 4059.284 kb on + strand at 4059.284 kb on + strand at 4059.284 kb on + strand at 4060.687 kb on - strand at 4060.687 kb on - strand at 4060.954 kb on + strand, within ABIE41_RS19785 at 4060.954 kb on + strand, within ABIE41_RS19785 at 4060.954 kb on + strand, within ABIE41_RS19785 at 4060.954 kb on + strand, within ABIE41_RS19785 at 4060.955 kb on - strand, within ABIE41_RS19785 at 4060.955 kb on - strand, within ABIE41_RS19785 at 4060.955 kb on - strand, within ABIE41_RS19785 at 4060.955 kb on - strand, within ABIE41_RS19785 at 4060.955 kb on - strand, within ABIE41_RS19785 at 4061.131 kb on + strand, within ABIE41_RS19785 at 4061.131 kb on + strand, within ABIE41_RS19785 at 4061.131 kb on + strand, within ABIE41_RS19785 at 4061.131 kb on + strand, within ABIE41_RS19785 at 4061.320 kb on + strand, within ABIE41_RS19785 at 4061.321 kb on - strand, within ABIE41_RS19785 at 4061.419 kb on + strand, within ABIE41_RS19785
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM remove 4,058,576 - -0.8 4,058,576 - +1.9 4,059,250 - +0.4 4,059,284 + -0.1 4,059,284 + +1.4 4,059,284 + -0.3 4,060,687 - +0.2 4,060,687 - +0.6 4,060,954 + ABIE41_RS19785 0.14 +0.4 4,060,954 + ABIE41_RS19785 0.14 +0.9 4,060,954 + ABIE41_RS19785 0.14 +1.9 4,060,954 + ABIE41_RS19785 0.14 -0.5 4,060,955 - ABIE41_RS19785 0.14 -0.1 4,060,955 - ABIE41_RS19785 0.14 +0.5 4,060,955 - ABIE41_RS19785 0.14 -0.5 4,060,955 - ABIE41_RS19785 0.14 -0.4 4,060,955 - ABIE41_RS19785 0.14 +0.6 4,061,131 + ABIE41_RS19785 0.28 +0.1 4,061,131 + ABIE41_RS19785 0.28 -0.2 4,061,131 + ABIE41_RS19785 0.28 +0.6 4,061,131 + ABIE41_RS19785 0.28 +0.5 4,061,320 + ABIE41_RS19785 0.44 +0.2 4,061,321 - ABIE41_RS19785 0.44 +0.2 4,061,419 + ABIE41_RS19785 0.52 +0.3
Or see this region's nucleotide sequence