Experiment: R2A with 3-octanone 2.65516666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS17575 and ABIE41_RS17580 are separated by 22 nucleotides ABIE41_RS17580 and ABIE41_RS17585 are separated by 13 nucleotides ABIE41_RS17585 and ABIE41_RS17590 overlap by 4 nucleotides
ABIE41_RS17575: ABIE41_RS17575 - RIP metalloprotease RseP, at 3,618,048 to 3,619,199
_RS17575
ABIE41_RS17580: ABIE41_RS17580 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 3,619,222 to 3,620,400
_RS17580
ABIE41_RS17585: ABIE41_RS17585 - phosphatidate cytidylyltransferase, at 3,620,414 to 3,621,241
_RS17585
ABIE41_RS17590: ABIE41_RS17590 - isoprenyl transferase, at 3,621,238 to 3,621,996
_RS17590
Position (kb)
3619
3620
3621 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3618.385 kb on + strand, within ABIE41_RS17575 at 3618.390 kb on + strand, within ABIE41_RS17575 at 3618.391 kb on + strand, within ABIE41_RS17575 at 3618.391 kb on + strand, within ABIE41_RS17575 at 3618.391 kb on + strand, within ABIE41_RS17575 at 3618.391 kb on + strand, within ABIE41_RS17575 at 3618.391 kb on + strand, within ABIE41_RS17575 at 3618.392 kb on - strand, within ABIE41_RS17575 at 3618.410 kb on - strand, within ABIE41_RS17575 at 3618.455 kb on - strand, within ABIE41_RS17575 at 3618.455 kb on - strand, within ABIE41_RS17575 at 3618.776 kb on - strand, within ABIE41_RS17575 at 3618.776 kb on - strand, within ABIE41_RS17575 at 3618.964 kb on + strand, within ABIE41_RS17575 at 3619.148 kb on + strand at 3619.148 kb on + strand at 3619.148 kb on + strand at 3619.149 kb on - strand at 3619.150 kb on + strand at 3619.150 kb on + strand at 3619.150 kb on + strand at 3619.150 kb on + strand at 3619.151 kb on - strand at 3619.151 kb on - strand at 3619.151 kb on - strand at 3619.151 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM remove 3,618,385 + ABIE41_RS17575 0.29 -3.3 3,618,390 + ABIE41_RS17575 0.30 -0.8 3,618,391 + ABIE41_RS17575 0.30 -1.5 3,618,391 + ABIE41_RS17575 0.30 -3.2 3,618,391 + ABIE41_RS17575 0.30 -0.9 3,618,391 + ABIE41_RS17575 0.30 -3.5 3,618,391 + ABIE41_RS17575 0.30 -2.0 3,618,392 - ABIE41_RS17575 0.30 -2.3 3,618,410 - ABIE41_RS17575 0.31 -2.1 3,618,455 - ABIE41_RS17575 0.35 -1.0 3,618,455 - ABIE41_RS17575 0.35 -1.6 3,618,776 - ABIE41_RS17575 0.63 -1.3 3,618,776 - ABIE41_RS17575 0.63 -1.9 3,618,964 + ABIE41_RS17575 0.80 -1.9 3,619,148 + -1.4 3,619,148 + -4.2 3,619,148 + +0.8 3,619,149 - -1.7 3,619,150 + -3.4 3,619,150 + -2.3 3,619,150 + -1.9 3,619,150 + -1.8 3,619,151 - -1.3 3,619,151 - +1.0 3,619,151 - -2.3 3,619,151 - -1.3
Or see this region's nucleotide sequence