Strain Fitness in Bosea sp. OAE506 around ABIE41_RS11395

Experiment: R2A with 3-octanone 2.65516666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS11390 and ABIE41_RS11395 are separated by 32 nucleotidesABIE41_RS11395 and ABIE41_RS11400 are separated by 77 nucleotidesABIE41_RS11400 and ABIE41_RS11405 are separated by 202 nucleotides ABIE41_RS11390: ABIE41_RS11390 - ATP-binding protein, at 2,339,333 to 2,340,754 _RS11390 ABIE41_RS11395: ABIE41_RS11395 - response regulator transcription factor, at 2,340,787 to 2,341,515 _RS11395 ABIE41_RS11400: ABIE41_RS11400 - MarR family transcriptional regulator, at 2,341,593 to 2,342,099 _RS11400 ABIE41_RS11405: ABIE41_RS11405 - branched-chain amino acid aminotransferase, at 2,342,302 to 2,343,189 _RS11405 Position (kb) 2340 2341 2342Strain fitness (log2 ratio) -2 -1 0 1 2at 2340.625 kb on - strandat 2341.581 kb on - strandat 2341.749 kb on + strand, within ABIE41_RS11400at 2341.749 kb on + strand, within ABIE41_RS11400at 2341.750 kb on - strand, within ABIE41_RS11400at 2341.750 kb on - strand, within ABIE41_RS11400at 2341.964 kb on - strand, within ABIE41_RS11400at 2342.035 kb on + strand, within ABIE41_RS11400at 2342.035 kb on + strand, within ABIE41_RS11400at 2342.387 kb on + strandat 2342.387 kb on + strandat 2342.387 kb on + strandat 2342.387 kb on + strandat 2342.388 kb on - strandat 2342.407 kb on + strand, within ABIE41_RS11405at 2342.440 kb on + strand, within ABIE41_RS11405at 2342.441 kb on - strand, within ABIE41_RS11405at 2342.455 kb on + strand, within ABIE41_RS11405at 2342.456 kb on - strand, within ABIE41_RS11405at 2342.456 kb on - strand, within ABIE41_RS11405at 2342.456 kb on - strand, within ABIE41_RS11405at 2342.456 kb on - strand, within ABIE41_RS11405at 2342.456 kb on - strand, within ABIE41_RS11405

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM
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2,340,625 - -0.4
2,341,581 - +0.2
2,341,749 + ABIE41_RS11400 0.31 +0.1
2,341,749 + ABIE41_RS11400 0.31 +0.4
2,341,750 - ABIE41_RS11400 0.31 -0.5
2,341,750 - ABIE41_RS11400 0.31 -1.9
2,341,964 - ABIE41_RS11400 0.73 -0.2
2,342,035 + ABIE41_RS11400 0.87 -0.2
2,342,035 + ABIE41_RS11400 0.87 +0.2
2,342,387 + +0.8
2,342,387 + -1.4
2,342,387 + -0.5
2,342,387 + -0.6
2,342,388 - +0.4
2,342,407 + ABIE41_RS11405 0.12 +0.8
2,342,440 + ABIE41_RS11405 0.16 +2.4
2,342,441 - ABIE41_RS11405 0.16 +2.0
2,342,455 + ABIE41_RS11405 0.17 +0.5
2,342,456 - ABIE41_RS11405 0.17 -1.9
2,342,456 - ABIE41_RS11405 0.17 -0.8
2,342,456 - ABIE41_RS11405 0.17 -1.1
2,342,456 - ABIE41_RS11405 0.17 +1.2
2,342,456 - ABIE41_RS11405 0.17 -1.1

Or see this region's nucleotide sequence