Experiment: R2A with 3-octanone 2.65516666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS11390 and ABIE41_RS11395 are separated by 32 nucleotides ABIE41_RS11395 and ABIE41_RS11400 are separated by 77 nucleotides ABIE41_RS11400 and ABIE41_RS11405 are separated by 202 nucleotides
ABIE41_RS11390: ABIE41_RS11390 - ATP-binding protein, at 2,339,333 to 2,340,754
_RS11390
ABIE41_RS11395: ABIE41_RS11395 - response regulator transcription factor, at 2,340,787 to 2,341,515
_RS11395
ABIE41_RS11400: ABIE41_RS11400 - MarR family transcriptional regulator, at 2,341,593 to 2,342,099
_RS11400
ABIE41_RS11405: ABIE41_RS11405 - branched-chain amino acid aminotransferase, at 2,342,302 to 2,343,189
_RS11405
Position (kb)
2340
2341
2342 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2340.625 kb on - strand at 2341.581 kb on - strand at 2341.749 kb on + strand, within ABIE41_RS11400 at 2341.749 kb on + strand, within ABIE41_RS11400 at 2341.750 kb on - strand, within ABIE41_RS11400 at 2341.750 kb on - strand, within ABIE41_RS11400 at 2341.964 kb on - strand, within ABIE41_RS11400 at 2342.035 kb on + strand, within ABIE41_RS11400 at 2342.035 kb on + strand, within ABIE41_RS11400 at 2342.387 kb on + strand at 2342.387 kb on + strand at 2342.387 kb on + strand at 2342.387 kb on + strand at 2342.388 kb on - strand at 2342.407 kb on + strand, within ABIE41_RS11405 at 2342.440 kb on + strand, within ABIE41_RS11405 at 2342.441 kb on - strand, within ABIE41_RS11405 at 2342.455 kb on + strand, within ABIE41_RS11405 at 2342.456 kb on - strand, within ABIE41_RS11405 at 2342.456 kb on - strand, within ABIE41_RS11405 at 2342.456 kb on - strand, within ABIE41_RS11405 at 2342.456 kb on - strand, within ABIE41_RS11405 at 2342.456 kb on - strand, within ABIE41_RS11405
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM remove 2,340,625 - -0.4 2,341,581 - +0.2 2,341,749 + ABIE41_RS11400 0.31 +0.1 2,341,749 + ABIE41_RS11400 0.31 +0.4 2,341,750 - ABIE41_RS11400 0.31 -0.5 2,341,750 - ABIE41_RS11400 0.31 -1.9 2,341,964 - ABIE41_RS11400 0.73 -0.2 2,342,035 + ABIE41_RS11400 0.87 -0.2 2,342,035 + ABIE41_RS11400 0.87 +0.2 2,342,387 + +0.8 2,342,387 + -1.4 2,342,387 + -0.5 2,342,387 + -0.6 2,342,388 - +0.4 2,342,407 + ABIE41_RS11405 0.12 +0.8 2,342,440 + ABIE41_RS11405 0.16 +2.4 2,342,441 - ABIE41_RS11405 0.16 +2.0 2,342,455 + ABIE41_RS11405 0.17 +0.5 2,342,456 - ABIE41_RS11405 0.17 -1.9 2,342,456 - ABIE41_RS11405 0.17 -0.8 2,342,456 - ABIE41_RS11405 0.17 -1.1 2,342,456 - ABIE41_RS11405 0.17 +1.2 2,342,456 - ABIE41_RS11405 0.17 -1.1
Or see this region's nucleotide sequence