Experiment: R2A with 3-octanone 2.65516666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS07610 and ABIE41_RS07615 are separated by 99 nucleotides ABIE41_RS07615 and ABIE41_RS07620 are separated by 72 nucleotides ABIE41_RS07620 and ABIE41_RS07625 overlap by 12 nucleotides ABIE41_RS07625 and ABIE41_RS07630 are separated by 122 nucleotides
ABIE41_RS07610: ABIE41_RS07610 - sigma-70 family RNA polymerase sigma factor, at 1,558,058 to 1,558,618
_RS07610
ABIE41_RS07615: ABIE41_RS07615 - hypothetical protein, at 1,558,718 to 1,559,395
_RS07615
ABIE41_RS07620: ABIE41_RS07620 - S8 family serine peptidase, at 1,559,468 to 1,560,907
_RS07620
ABIE41_RS07625: ABIE41_RS07625 - nuclear transport factor 2 family protein, at 1,560,896 to 1,561,357
_RS07625
ABIE41_RS07630: ABIE41_RS07630 - glycosyltransferase, at 1,561,480 to 1,562,634
_RS07630
Position (kb)
1559
1560
1561 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1558.478 kb on + strand, within ABIE41_RS07610 at 1558.478 kb on + strand, within ABIE41_RS07610 at 1558.479 kb on - strand, within ABIE41_RS07610 at 1558.479 kb on - strand, within ABIE41_RS07610 at 1558.479 kb on - strand, within ABIE41_RS07610 at 1558.482 kb on - strand, within ABIE41_RS07610 at 1558.482 kb on - strand, within ABIE41_RS07610 at 1559.721 kb on + strand, within ABIE41_RS07620 at 1560.071 kb on + strand, within ABIE41_RS07620 at 1560.071 kb on + strand, within ABIE41_RS07620 at 1560.071 kb on + strand, within ABIE41_RS07620 at 1560.071 kb on + strand, within ABIE41_RS07620 at 1560.071 kb on + strand, within ABIE41_RS07620 at 1560.071 kb on + strand, within ABIE41_RS07620 at 1560.071 kb on + strand, within ABIE41_RS07620 at 1560.071 kb on + strand, within ABIE41_RS07620 at 1560.071 kb on + strand, within ABIE41_RS07620 at 1560.072 kb on - strand, within ABIE41_RS07620 at 1560.072 kb on - strand, within ABIE41_RS07620 at 1560.200 kb on + strand, within ABIE41_RS07620 at 1560.201 kb on - strand, within ABIE41_RS07620 at 1560.201 kb on - strand, within ABIE41_RS07620 at 1560.201 kb on - strand, within ABIE41_RS07620 at 1560.201 kb on - strand, within ABIE41_RS07620 at 1560.680 kb on + strand, within ABIE41_RS07620 at 1560.680 kb on + strand, within ABIE41_RS07620 at 1560.680 kb on + strand, within ABIE41_RS07620 at 1560.680 kb on + strand, within ABIE41_RS07620 at 1560.772 kb on - strand at 1560.890 kb on - strand at 1560.936 kb on + strand at 1560.936 kb on + strand at 1560.936 kb on + strand at 1560.936 kb on + strand at 1560.937 kb on - strand at 1560.937 kb on - strand at 1560.937 kb on - strand at 1560.937 kb on - strand at 1560.937 kb on - strand at 1561.212 kb on + strand, within ABIE41_RS07625 at 1561.212 kb on + strand, within ABIE41_RS07625 at 1561.212 kb on + strand, within ABIE41_RS07625 at 1561.212 kb on + strand, within ABIE41_RS07625 at 1561.212 kb on + strand, within ABIE41_RS07625 at 1561.212 kb on + strand, within ABIE41_RS07625 at 1561.213 kb on - strand, within ABIE41_RS07625 at 1561.213 kb on - strand, within ABIE41_RS07625 at 1561.213 kb on - strand, within ABIE41_RS07625 at 1561.213 kb on - strand, within ABIE41_RS07625 at 1561.213 kb on - strand, within ABIE41_RS07625 at 1561.213 kb on - strand, within ABIE41_RS07625 at 1561.213 kb on - strand, within ABIE41_RS07625 at 1561.213 kb on - strand, within ABIE41_RS07625 at 1561.213 kb on - strand, within ABIE41_RS07625 at 1561.213 kb on - strand, within ABIE41_RS07625 at 1561.213 kb on - strand, within ABIE41_RS07625 at 1561.242 kb on + strand, within ABIE41_RS07625 at 1561.243 kb on - strand, within ABIE41_RS07625 at 1561.324 kb on + strand at 1561.325 kb on - strand at 1561.384 kb on + strand at 1561.384 kb on + strand at 1561.384 kb on + strand at 1561.384 kb on + strand at 1561.384 kb on + strand at 1561.384 kb on + strand at 1561.384 kb on + strand at 1561.385 kb on - strand at 1561.385 kb on - strand at 1561.385 kb on - strand at 1561.385 kb on - strand at 1561.385 kb on - strand at 1561.385 kb on - strand at 1561.385 kb on - strand at 1561.430 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM remove 1,558,478 + ABIE41_RS07610 0.75 -0.3 1,558,478 + ABIE41_RS07610 0.75 -1.0 1,558,479 - ABIE41_RS07610 0.75 -0.5 1,558,479 - ABIE41_RS07610 0.75 -0.4 1,558,479 - ABIE41_RS07610 0.75 -0.7 1,558,482 - ABIE41_RS07610 0.76 -0.5 1,558,482 - ABIE41_RS07610 0.76 +0.9 1,559,721 + ABIE41_RS07620 0.18 +0.2 1,560,071 + ABIE41_RS07620 0.42 +0.7 1,560,071 + ABIE41_RS07620 0.42 -2.1 1,560,071 + ABIE41_RS07620 0.42 -0.0 1,560,071 + ABIE41_RS07620 0.42 +1.0 1,560,071 + ABIE41_RS07620 0.42 -0.2 1,560,071 + ABIE41_RS07620 0.42 -2.4 1,560,071 + ABIE41_RS07620 0.42 -0.0 1,560,071 + ABIE41_RS07620 0.42 +0.8 1,560,071 + ABIE41_RS07620 0.42 -0.1 1,560,072 - ABIE41_RS07620 0.42 -0.1 1,560,072 - ABIE41_RS07620 0.42 -0.9 1,560,200 + ABIE41_RS07620 0.51 +0.5 1,560,201 - ABIE41_RS07620 0.51 -1.5 1,560,201 - ABIE41_RS07620 0.51 +0.0 1,560,201 - ABIE41_RS07620 0.51 -0.1 1,560,201 - ABIE41_RS07620 0.51 -0.1 1,560,680 + ABIE41_RS07620 0.84 -1.1 1,560,680 + ABIE41_RS07620 0.84 +0.2 1,560,680 + ABIE41_RS07620 0.84 -0.1 1,560,680 + ABIE41_RS07620 0.84 -0.5 1,560,772 - +1.3 1,560,890 - +1.6 1,560,936 + +0.3 1,560,936 + -1.1 1,560,936 + -0.7 1,560,936 + +1.5 1,560,937 - +1.1 1,560,937 - +0.3 1,560,937 - -0.3 1,560,937 - +0.8 1,560,937 - +0.3 1,561,212 + ABIE41_RS07625 0.68 -0.2 1,561,212 + ABIE41_RS07625 0.68 -2.8 1,561,212 + ABIE41_RS07625 0.68 -1.5 1,561,212 + ABIE41_RS07625 0.68 +0.3 1,561,212 + ABIE41_RS07625 0.68 -0.2 1,561,212 + ABIE41_RS07625 0.68 +0.1 1,561,213 - ABIE41_RS07625 0.69 +1.1 1,561,213 - ABIE41_RS07625 0.69 +0.9 1,561,213 - ABIE41_RS07625 0.69 +0.5 1,561,213 - ABIE41_RS07625 0.69 -0.0 1,561,213 - ABIE41_RS07625 0.69 +0.3 1,561,213 - ABIE41_RS07625 0.69 -0.7 1,561,213 - ABIE41_RS07625 0.69 -0.2 1,561,213 - ABIE41_RS07625 0.69 +1.1 1,561,213 - ABIE41_RS07625 0.69 -0.8 1,561,213 - ABIE41_RS07625 0.69 -0.3 1,561,213 - ABIE41_RS07625 0.69 +0.7 1,561,242 + ABIE41_RS07625 0.75 +0.3 1,561,243 - ABIE41_RS07625 0.75 +3.1 1,561,324 + -0.1 1,561,325 - +0.5 1,561,384 + +0.2 1,561,384 + -1.5 1,561,384 + +0.2 1,561,384 + +0.7 1,561,384 + +0.2 1,561,384 + -0.7 1,561,384 + +0.1 1,561,385 - -0.3 1,561,385 - +0.2 1,561,385 - +0.4 1,561,385 - +0.0 1,561,385 - -0.2 1,561,385 - +0.5 1,561,385 - +0.9 1,561,430 + +0.2
Or see this region's nucleotide sequence