Experiment: R2A with 3-octanone 2.65516666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS07585 and ABIE41_RS07590 are separated by 270 nucleotides ABIE41_RS07590 and ABIE41_RS07595 are separated by 151 nucleotides ABIE41_RS07595 and ABIE41_RS07600 are separated by 84 nucleotides ABIE41_RS07600 and ABIE41_RS07605 are separated by 193 nucleotides ABIE41_RS07605 and ABIE41_RS07610 are separated by 245 nucleotides
ABIE41_RS07585: ABIE41_RS07585 - glutamate 5-kinase, at 1,554,799 to 1,555,941
_RS07585
ABIE41_RS07590: ABIE41_RS07590 - cold-shock protein, at 1,556,212 to 1,556,421
_RS07590
ABIE41_RS07595: ABIE41_RS07595 - 30S ribosomal protein S21, at 1,556,573 to 1,556,836
_RS07595
ABIE41_RS07600: ABIE41_RS07600 - DUF6481 family protein, at 1,556,921 to 1,557,298
_RS07600
ABIE41_RS07605: ABIE41_RS07605 - hypothetical protein, at 1,557,492 to 1,557,812
_RS07605
ABIE41_RS07610: ABIE41_RS07610 - sigma-70 family RNA polymerase sigma factor, at 1,558,058 to 1,558,618
_RS07610
Position (kb)
1556
1557
1558 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1555.988 kb on - strand at 1555.988 kb on - strand at 1555.989 kb on - strand at 1556.070 kb on - strand at 1556.084 kb on + strand at 1556.084 kb on + strand at 1556.084 kb on + strand at 1556.084 kb on + strand at 1556.085 kb on - strand at 1556.089 kb on - strand at 1556.089 kb on - strand at 1556.191 kb on + strand at 1556.191 kb on + strand at 1556.191 kb on + strand at 1556.191 kb on + strand at 1556.192 kb on - strand at 1556.192 kb on - strand at 1556.192 kb on - strand at 1556.192 kb on - strand at 1556.194 kb on - strand at 1556.359 kb on + strand, within ABIE41_RS07590 at 1556.359 kb on + strand, within ABIE41_RS07590 at 1556.359 kb on + strand, within ABIE41_RS07590 at 1556.444 kb on + strand at 1556.445 kb on - strand at 1556.472 kb on + strand at 1556.472 kb on + strand at 1556.473 kb on - strand at 1556.473 kb on - strand at 1556.473 kb on - strand at 1556.502 kb on - strand at 1556.597 kb on - strand at 1556.597 kb on - strand at 1556.678 kb on + strand, within ABIE41_RS07595 at 1556.866 kb on + strand at 1556.916 kb on + strand at 1557.261 kb on - strand at 1557.956 kb on + strand at 1557.957 kb on - strand at 1558.007 kb on + strand at 1558.008 kb on - strand at 1558.008 kb on - strand at 1558.008 kb on - strand at 1558.008 kb on - strand at 1558.008 kb on - strand at 1558.008 kb on - strand at 1558.063 kb on + strand at 1558.064 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM remove 1,555,988 - -0.1 1,555,988 - -0.1 1,555,989 - -0.2 1,556,070 - -0.3 1,556,084 + +1.9 1,556,084 + -0.3 1,556,084 + +0.3 1,556,084 + +0.9 1,556,085 - -0.1 1,556,089 - +0.1 1,556,089 - -0.7 1,556,191 + +0.2 1,556,191 + -0.6 1,556,191 + +0.8 1,556,191 + +1.1 1,556,192 - -0.3 1,556,192 - +0.4 1,556,192 - +0.4 1,556,192 - +2.5 1,556,194 - +0.1 1,556,359 + ABIE41_RS07590 0.70 -0.1 1,556,359 + ABIE41_RS07590 0.70 -1.2 1,556,359 + ABIE41_RS07590 0.70 -0.8 1,556,444 + +2.6 1,556,445 - +0.1 1,556,472 + +0.4 1,556,472 + +0.5 1,556,473 - -0.4 1,556,473 - +0.0 1,556,473 - +1.5 1,556,502 - +0.0 1,556,597 - +0.1 1,556,597 - +0.2 1,556,678 + ABIE41_RS07595 0.40 -0.9 1,556,866 + +1.9 1,556,916 + -2.7 1,557,261 - +0.9 1,557,956 + +0.2 1,557,957 - -0.5 1,558,007 + +0.3 1,558,008 - -2.0 1,558,008 - -0.3 1,558,008 - +0.9 1,558,008 - -0.5 1,558,008 - +0.9 1,558,008 - -0.7 1,558,063 + +0.3 1,558,064 - +0.2
Or see this region's nucleotide sequence