Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07600

Experiment: R2A with 3-octanone 2.65516666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS07585 and ABIE41_RS07590 are separated by 270 nucleotidesABIE41_RS07590 and ABIE41_RS07595 are separated by 151 nucleotidesABIE41_RS07595 and ABIE41_RS07600 are separated by 84 nucleotidesABIE41_RS07600 and ABIE41_RS07605 are separated by 193 nucleotidesABIE41_RS07605 and ABIE41_RS07610 are separated by 245 nucleotides ABIE41_RS07585: ABIE41_RS07585 - glutamate 5-kinase, at 1,554,799 to 1,555,941 _RS07585 ABIE41_RS07590: ABIE41_RS07590 - cold-shock protein, at 1,556,212 to 1,556,421 _RS07590 ABIE41_RS07595: ABIE41_RS07595 - 30S ribosomal protein S21, at 1,556,573 to 1,556,836 _RS07595 ABIE41_RS07600: ABIE41_RS07600 - DUF6481 family protein, at 1,556,921 to 1,557,298 _RS07600 ABIE41_RS07605: ABIE41_RS07605 - hypothetical protein, at 1,557,492 to 1,557,812 _RS07605 ABIE41_RS07610: ABIE41_RS07610 - sigma-70 family RNA polymerase sigma factor, at 1,558,058 to 1,558,618 _RS07610 Position (kb) 1556 1557 1558Strain fitness (log2 ratio) -2 -1 0 1 2at 1555.988 kb on - strandat 1555.988 kb on - strandat 1555.989 kb on - strandat 1556.070 kb on - strandat 1556.084 kb on + strandat 1556.084 kb on + strandat 1556.084 kb on + strandat 1556.084 kb on + strandat 1556.085 kb on - strandat 1556.089 kb on - strandat 1556.089 kb on - strandat 1556.191 kb on + strandat 1556.191 kb on + strandat 1556.191 kb on + strandat 1556.191 kb on + strandat 1556.192 kb on - strandat 1556.192 kb on - strandat 1556.192 kb on - strandat 1556.192 kb on - strandat 1556.194 kb on - strandat 1556.359 kb on + strand, within ABIE41_RS07590at 1556.359 kb on + strand, within ABIE41_RS07590at 1556.359 kb on + strand, within ABIE41_RS07590at 1556.444 kb on + strandat 1556.445 kb on - strandat 1556.472 kb on + strandat 1556.472 kb on + strandat 1556.473 kb on - strandat 1556.473 kb on - strandat 1556.473 kb on - strandat 1556.502 kb on - strandat 1556.597 kb on - strandat 1556.597 kb on - strandat 1556.678 kb on + strand, within ABIE41_RS07595at 1556.866 kb on + strandat 1556.916 kb on + strandat 1557.261 kb on - strandat 1557.956 kb on + strandat 1557.957 kb on - strandat 1558.007 kb on + strandat 1558.008 kb on - strandat 1558.008 kb on - strandat 1558.008 kb on - strandat 1558.008 kb on - strandat 1558.008 kb on - strandat 1558.008 kb on - strandat 1558.063 kb on + strandat 1558.064 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 2.65516666666667 mM
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1,555,988 - -0.1
1,555,988 - -0.1
1,555,989 - -0.2
1,556,070 - -0.3
1,556,084 + +1.9
1,556,084 + -0.3
1,556,084 + +0.3
1,556,084 + +0.9
1,556,085 - -0.1
1,556,089 - +0.1
1,556,089 - -0.7
1,556,191 + +0.2
1,556,191 + -0.6
1,556,191 + +0.8
1,556,191 + +1.1
1,556,192 - -0.3
1,556,192 - +0.4
1,556,192 - +0.4
1,556,192 - +2.5
1,556,194 - +0.1
1,556,359 + ABIE41_RS07590 0.70 -0.1
1,556,359 + ABIE41_RS07590 0.70 -1.2
1,556,359 + ABIE41_RS07590 0.70 -0.8
1,556,444 + +2.6
1,556,445 - +0.1
1,556,472 + +0.4
1,556,472 + +0.5
1,556,473 - -0.4
1,556,473 - +0.0
1,556,473 - +1.5
1,556,502 - +0.0
1,556,597 - +0.1
1,556,597 - +0.2
1,556,678 + ABIE41_RS07595 0.40 -0.9
1,556,866 + +1.9
1,556,916 + -2.7
1,557,261 - +0.9
1,557,956 + +0.2
1,557,957 - -0.5
1,558,007 + +0.3
1,558,008 - -2.0
1,558,008 - -0.3
1,558,008 - +0.9
1,558,008 - -0.5
1,558,008 - +0.9
1,558,008 - -0.7
1,558,063 + +0.3
1,558,064 - +0.2

Or see this region's nucleotide sequence