Strain Fitness in Bosea sp. OAE506 around ABIE41_RS20840

Experiment: R2A with 3-octanone 5.31033333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS20835 and ABIE41_RS20840 are separated by 6 nucleotidesABIE41_RS20840 and ABIE41_RS20845 are separated by 91 nucleotides ABIE41_RS20835: ABIE41_RS20835 - cytochrome P450, at 4,282,979 to 4,284,343 _RS20835 ABIE41_RS20840: ABIE41_RS20840 - hypothetical protein, at 4,284,350 to 4,284,838 _RS20840 ABIE41_RS20845: ABIE41_RS20845 - ABC transporter ATP-binding protein/permease, at 4,284,930 to 4,286,843 _RS20845 Position (kb) 4284 4285Strain fitness (log2 ratio) -2 -1 0 1 2at 4283.534 kb on + strand, within ABIE41_RS20835at 4283.534 kb on + strand, within ABIE41_RS20835at 4283.534 kb on + strand, within ABIE41_RS20835at 4283.534 kb on + strand, within ABIE41_RS20835at 4283.534 kb on + strand, within ABIE41_RS20835at 4283.534 kb on + strand, within ABIE41_RS20835at 4283.534 kb on + strand, within ABIE41_RS20835at 4283.535 kb on - strand, within ABIE41_RS20835at 4283.546 kb on + strand, within ABIE41_RS20835at 4283.546 kb on + strand, within ABIE41_RS20835at 4283.547 kb on - strand, within ABIE41_RS20835at 4283.547 kb on - strand, within ABIE41_RS20835at 4283.615 kb on + strand, within ABIE41_RS20835at 4283.616 kb on - strand, within ABIE41_RS20835at 4283.616 kb on - strand, within ABIE41_RS20835at 4283.905 kb on + strand, within ABIE41_RS20835at 4283.958 kb on - strand, within ABIE41_RS20835at 4283.958 kb on - strand, within ABIE41_RS20835at 4284.041 kb on + strand, within ABIE41_RS20835at 4284.041 kb on + strand, within ABIE41_RS20835at 4284.041 kb on + strand, within ABIE41_RS20835at 4284.042 kb on - strand, within ABIE41_RS20835at 4284.042 kb on - strand, within ABIE41_RS20835at 4284.042 kb on - strand, within ABIE41_RS20835at 4284.078 kb on + strand, within ABIE41_RS20835at 4284.079 kb on - strand, within ABIE41_RS20835at 4284.079 kb on - strand, within ABIE41_RS20835at 4284.079 kb on - strand, within ABIE41_RS20835at 4284.147 kb on - strand, within ABIE41_RS20835at 4284.147 kb on - strand, within ABIE41_RS20835at 4284.152 kb on + strand, within ABIE41_RS20835at 4284.153 kb on - strand, within ABIE41_RS20835at 4284.153 kb on - strand, within ABIE41_RS20835at 4284.153 kb on - strand, within ABIE41_RS20835at 4284.153 kb on - strand, within ABIE41_RS20835at 4284.367 kb on - strandat 4284.528 kb on + strand, within ABIE41_RS20840at 4284.528 kb on + strand, within ABIE41_RS20840at 4284.529 kb on - strand, within ABIE41_RS20840at 4284.529 kb on - strand, within ABIE41_RS20840at 4284.547 kb on + strand, within ABIE41_RS20840at 4284.555 kb on + strand, within ABIE41_RS20840at 4284.556 kb on - strand, within ABIE41_RS20840at 4284.556 kb on - strand, within ABIE41_RS20840at 4284.556 kb on - strand, within ABIE41_RS20840at 4284.556 kb on - strand, within ABIE41_RS20840at 4285.036 kb on + strandat 4285.036 kb on + strandat 4285.037 kb on - strandat 4285.037 kb on - strandat 4285.343 kb on - strand, within ABIE41_RS20845at 4285.444 kb on + strand, within ABIE41_RS20845at 4285.473 kb on - strand, within ABIE41_RS20845at 4285.570 kb on + strand, within ABIE41_RS20845at 4285.571 kb on - strand, within ABIE41_RS20845at 4285.571 kb on - strand, within ABIE41_RS20845at 4285.571 kb on - strand, within ABIE41_RS20845at 4285.691 kb on + strand, within ABIE41_RS20845at 4285.692 kb on - strand, within ABIE41_RS20845at 4285.693 kb on + strand, within ABIE41_RS20845at 4285.693 kb on + strand, within ABIE41_RS20845at 4285.693 kb on + strand, within ABIE41_RS20845at 4285.693 kb on + strand, within ABIE41_RS20845at 4285.693 kb on + strand, within ABIE41_RS20845at 4285.693 kb on + strand, within ABIE41_RS20845at 4285.693 kb on + strand, within ABIE41_RS20845at 4285.693 kb on + strand, within ABIE41_RS20845at 4285.693 kb on + strand, within ABIE41_RS20845at 4285.693 kb on + strand, within ABIE41_RS20845at 4285.694 kb on - strand, within ABIE41_RS20845at 4285.694 kb on - strand, within ABIE41_RS20845at 4285.694 kb on - strand, within ABIE41_RS20845at 4285.694 kb on - strand, within ABIE41_RS20845at 4285.694 kb on - strand, within ABIE41_RS20845at 4285.694 kb on - strand, within ABIE41_RS20845

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM
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4,283,534 + ABIE41_RS20835 0.41 +1.6
4,283,534 + ABIE41_RS20835 0.41 +0.8
4,283,534 + ABIE41_RS20835 0.41 -0.3
4,283,534 + ABIE41_RS20835 0.41 -0.1
4,283,534 + ABIE41_RS20835 0.41 +2.0
4,283,534 + ABIE41_RS20835 0.41 -0.4
4,283,534 + ABIE41_RS20835 0.41 -0.6
4,283,535 - ABIE41_RS20835 0.41 +1.0
4,283,546 + ABIE41_RS20835 0.42 +0.0
4,283,546 + ABIE41_RS20835 0.42 -1.1
4,283,547 - ABIE41_RS20835 0.42 +0.3
4,283,547 - ABIE41_RS20835 0.42 -0.6
4,283,615 + ABIE41_RS20835 0.47 -0.1
4,283,616 - ABIE41_RS20835 0.47 +0.1
4,283,616 - ABIE41_RS20835 0.47 -1.0
4,283,905 + ABIE41_RS20835 0.68 +1.2
4,283,958 - ABIE41_RS20835 0.72 +1.4
4,283,958 - ABIE41_RS20835 0.72 +0.2
4,284,041 + ABIE41_RS20835 0.78 -0.2
4,284,041 + ABIE41_RS20835 0.78 -0.3
4,284,041 + ABIE41_RS20835 0.78 +0.6
4,284,042 - ABIE41_RS20835 0.78 -0.9
4,284,042 - ABIE41_RS20835 0.78 -0.4
4,284,042 - ABIE41_RS20835 0.78 +1.2
4,284,078 + ABIE41_RS20835 0.81 +1.0
4,284,079 - ABIE41_RS20835 0.81 -0.2
4,284,079 - ABIE41_RS20835 0.81 +0.2
4,284,079 - ABIE41_RS20835 0.81 +0.0
4,284,147 - ABIE41_RS20835 0.86 +0.6
4,284,147 - ABIE41_RS20835 0.86 +0.7
4,284,152 + ABIE41_RS20835 0.86 -0.6
4,284,153 - ABIE41_RS20835 0.86 +0.5
4,284,153 - ABIE41_RS20835 0.86 +1.0
4,284,153 - ABIE41_RS20835 0.86 -0.6
4,284,153 - ABIE41_RS20835 0.86 -0.7
4,284,367 - +0.2
4,284,528 + ABIE41_RS20840 0.36 +1.2
4,284,528 + ABIE41_RS20840 0.36 +0.4
4,284,529 - ABIE41_RS20840 0.37 +1.2
4,284,529 - ABIE41_RS20840 0.37 -0.8
4,284,547 + ABIE41_RS20840 0.40 +0.5
4,284,555 + ABIE41_RS20840 0.42 -2.2
4,284,556 - ABIE41_RS20840 0.42 -0.4
4,284,556 - ABIE41_RS20840 0.42 +0.8
4,284,556 - ABIE41_RS20840 0.42 -0.1
4,284,556 - ABIE41_RS20840 0.42 +0.6
4,285,036 + -0.7
4,285,036 + +0.8
4,285,037 - +0.4
4,285,037 - +0.6
4,285,343 - ABIE41_RS20845 0.22 -0.5
4,285,444 + ABIE41_RS20845 0.27 -2.4
4,285,473 - ABIE41_RS20845 0.28 -0.1
4,285,570 + ABIE41_RS20845 0.33 -0.2
4,285,571 - ABIE41_RS20845 0.33 -0.3
4,285,571 - ABIE41_RS20845 0.33 +1.6
4,285,571 - ABIE41_RS20845 0.33 +1.0
4,285,691 + ABIE41_RS20845 0.40 -1.3
4,285,692 - ABIE41_RS20845 0.40 -2.5
4,285,693 + ABIE41_RS20845 0.40 -0.1
4,285,693 + ABIE41_RS20845 0.40 +0.6
4,285,693 + ABIE41_RS20845 0.40 -1.4
4,285,693 + ABIE41_RS20845 0.40 +0.6
4,285,693 + ABIE41_RS20845 0.40 -0.8
4,285,693 + ABIE41_RS20845 0.40 -1.1
4,285,693 + ABIE41_RS20845 0.40 -0.5
4,285,693 + ABIE41_RS20845 0.40 -2.7
4,285,693 + ABIE41_RS20845 0.40 -1.4
4,285,693 + ABIE41_RS20845 0.40 +1.4
4,285,694 - ABIE41_RS20845 0.40 -0.2
4,285,694 - ABIE41_RS20845 0.40 -0.5
4,285,694 - ABIE41_RS20845 0.40 +0.6
4,285,694 - ABIE41_RS20845 0.40 -1.6
4,285,694 - ABIE41_RS20845 0.40 +1.2
4,285,694 - ABIE41_RS20845 0.40 -0.4

Or see this region's nucleotide sequence