Strain Fitness in Bosea sp. OAE506 around ABIE41_RS16885

Experiment: R2A with 3-octanone 5.31033333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS16875 and ABIE41_RS16880 are separated by 214 nucleotidesABIE41_RS16880 and ABIE41_RS16885 are separated by 59 nucleotidesABIE41_RS16885 and ABIE41_RS16890 are separated by 303 nucleotidesABIE41_RS16890 and ABIE41_RS16895 are separated by 93 nucleotides ABIE41_RS16875: ABIE41_RS16875 - hypothetical protein, at 3,477,294 to 3,477,509 _RS16875 ABIE41_RS16880: ABIE41_RS16880 - PRC-barrel domain-containing protein, at 3,477,724 to 3,478,305 _RS16880 ABIE41_RS16885: ABIE41_RS16885 - NAD(P)H-hydrate dehydratase, at 3,478,365 to 3,479,870 _RS16885 ABIE41_RS16890: ABIE41_RS16890 - P-II family nitrogen regulator, at 3,480,174 to 3,480,512 _RS16890 ABIE41_RS16895: ABIE41_RS16895 - type I glutamate--ammonia ligase, at 3,480,606 to 3,482,015 _RS16895 Position (kb) 3478 3479 3480Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3477.931 kb on + strand, within ABIE41_RS16880at 3477.932 kb on - strand, within ABIE41_RS16880at 3477.932 kb on - strand, within ABIE41_RS16880at 3477.932 kb on - strand, within ABIE41_RS16880at 3477.932 kb on - strand, within ABIE41_RS16880at 3477.932 kb on - strand, within ABIE41_RS16880at 3478.229 kb on - strand, within ABIE41_RS16880at 3478.291 kb on + strandat 3478.292 kb on - strandat 3479.137 kb on + strand, within ABIE41_RS16885at 3479.138 kb on - strand, within ABIE41_RS16885at 3479.141 kb on + strand, within ABIE41_RS16885at 3479.141 kb on + strand, within ABIE41_RS16885at 3479.141 kb on + strand, within ABIE41_RS16885at 3479.141 kb on + strand, within ABIE41_RS16885at 3479.141 kb on + strand, within ABIE41_RS16885at 3479.142 kb on - strand, within ABIE41_RS16885at 3479.142 kb on - strand, within ABIE41_RS16885at 3479.142 kb on - strand, within ABIE41_RS16885at 3479.142 kb on - strand, within ABIE41_RS16885at 3479.142 kb on - strand, within ABIE41_RS16885at 3479.142 kb on - strand, within ABIE41_RS16885at 3479.142 kb on - strand, within ABIE41_RS16885at 3479.142 kb on - strand, within ABIE41_RS16885at 3479.142 kb on - strand, within ABIE41_RS16885at 3479.148 kb on - strand, within ABIE41_RS16885at 3479.226 kb on - strand, within ABIE41_RS16885at 3479.226 kb on - strand, within ABIE41_RS16885at 3479.622 kb on + strand, within ABIE41_RS16885at 3479.951 kb on + strandat 3480.030 kb on + strandat 3480.553 kb on + strandat 3480.590 kb on + strandat 3480.590 kb on + strandat 3480.590 kb on + strandat 3480.590 kb on + strandat 3480.590 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM
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3,477,931 + ABIE41_RS16880 0.36 -0.0
3,477,932 - ABIE41_RS16880 0.36 +0.3
3,477,932 - ABIE41_RS16880 0.36 +1.2
3,477,932 - ABIE41_RS16880 0.36 -0.4
3,477,932 - ABIE41_RS16880 0.36 +0.1
3,477,932 - ABIE41_RS16880 0.36 +0.9
3,478,229 - ABIE41_RS16880 0.87 -0.0
3,478,291 + +0.5
3,478,292 - -0.2
3,479,137 + ABIE41_RS16885 0.51 -0.4
3,479,138 - ABIE41_RS16885 0.51 +0.3
3,479,141 + ABIE41_RS16885 0.52 -0.5
3,479,141 + ABIE41_RS16885 0.52 +0.3
3,479,141 + ABIE41_RS16885 0.52 -0.5
3,479,141 + ABIE41_RS16885 0.52 +0.4
3,479,141 + ABIE41_RS16885 0.52 -1.8
3,479,142 - ABIE41_RS16885 0.52 +0.0
3,479,142 - ABIE41_RS16885 0.52 -0.4
3,479,142 - ABIE41_RS16885 0.52 +0.4
3,479,142 - ABIE41_RS16885 0.52 -0.7
3,479,142 - ABIE41_RS16885 0.52 +0.4
3,479,142 - ABIE41_RS16885 0.52 +1.6
3,479,142 - ABIE41_RS16885 0.52 +0.8
3,479,142 - ABIE41_RS16885 0.52 +1.6
3,479,142 - ABIE41_RS16885 0.52 +0.4
3,479,148 - ABIE41_RS16885 0.52 -0.6
3,479,226 - ABIE41_RS16885 0.57 -0.8
3,479,226 - ABIE41_RS16885 0.57 -0.3
3,479,622 + ABIE41_RS16885 0.83 +1.7
3,479,951 + -1.1
3,480,030 + +5.3
3,480,553 + +0.2
3,480,590 + -1.7
3,480,590 + +1.0
3,480,590 + -0.8
3,480,590 + +0.9
3,480,590 + -0.5

Or see this region's nucleotide sequence