Experiment: R2A with 3-octanone 5.31033333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS16875 and ABIE41_RS16880 are separated by 214 nucleotides ABIE41_RS16880 and ABIE41_RS16885 are separated by 59 nucleotides ABIE41_RS16885 and ABIE41_RS16890 are separated by 303 nucleotides ABIE41_RS16890 and ABIE41_RS16895 are separated by 93 nucleotides
ABIE41_RS16875: ABIE41_RS16875 - hypothetical protein, at 3,477,294 to 3,477,509
_RS16875
ABIE41_RS16880: ABIE41_RS16880 - PRC-barrel domain-containing protein, at 3,477,724 to 3,478,305
_RS16880
ABIE41_RS16885: ABIE41_RS16885 - NAD(P)H-hydrate dehydratase, at 3,478,365 to 3,479,870
_RS16885
ABIE41_RS16890: ABIE41_RS16890 - P-II family nitrogen regulator, at 3,480,174 to 3,480,512
_RS16890
ABIE41_RS16895: ABIE41_RS16895 - type I glutamate--ammonia ligase, at 3,480,606 to 3,482,015
_RS16895
Position (kb)
3478
3479
3480 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 3477.931 kb on + strand, within ABIE41_RS16880 at 3477.932 kb on - strand, within ABIE41_RS16880 at 3477.932 kb on - strand, within ABIE41_RS16880 at 3477.932 kb on - strand, within ABIE41_RS16880 at 3477.932 kb on - strand, within ABIE41_RS16880 at 3477.932 kb on - strand, within ABIE41_RS16880 at 3478.229 kb on - strand, within ABIE41_RS16880 at 3478.291 kb on + strand at 3478.292 kb on - strand at 3479.137 kb on + strand, within ABIE41_RS16885 at 3479.138 kb on - strand, within ABIE41_RS16885 at 3479.141 kb on + strand, within ABIE41_RS16885 at 3479.141 kb on + strand, within ABIE41_RS16885 at 3479.141 kb on + strand, within ABIE41_RS16885 at 3479.141 kb on + strand, within ABIE41_RS16885 at 3479.141 kb on + strand, within ABIE41_RS16885 at 3479.142 kb on - strand, within ABIE41_RS16885 at 3479.142 kb on - strand, within ABIE41_RS16885 at 3479.142 kb on - strand, within ABIE41_RS16885 at 3479.142 kb on - strand, within ABIE41_RS16885 at 3479.142 kb on - strand, within ABIE41_RS16885 at 3479.142 kb on - strand, within ABIE41_RS16885 at 3479.142 kb on - strand, within ABIE41_RS16885 at 3479.142 kb on - strand, within ABIE41_RS16885 at 3479.142 kb on - strand, within ABIE41_RS16885 at 3479.148 kb on - strand, within ABIE41_RS16885 at 3479.226 kb on - strand, within ABIE41_RS16885 at 3479.226 kb on - strand, within ABIE41_RS16885 at 3479.622 kb on + strand, within ABIE41_RS16885 at 3479.951 kb on + strand at 3480.030 kb on + strand at 3480.553 kb on + strand at 3480.590 kb on + strand at 3480.590 kb on + strand at 3480.590 kb on + strand at 3480.590 kb on + strand at 3480.590 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM remove 3,477,931 + ABIE41_RS16880 0.36 -0.0 3,477,932 - ABIE41_RS16880 0.36 +0.3 3,477,932 - ABIE41_RS16880 0.36 +1.2 3,477,932 - ABIE41_RS16880 0.36 -0.4 3,477,932 - ABIE41_RS16880 0.36 +0.1 3,477,932 - ABIE41_RS16880 0.36 +0.9 3,478,229 - ABIE41_RS16880 0.87 -0.0 3,478,291 + +0.5 3,478,292 - -0.2 3,479,137 + ABIE41_RS16885 0.51 -0.4 3,479,138 - ABIE41_RS16885 0.51 +0.3 3,479,141 + ABIE41_RS16885 0.52 -0.5 3,479,141 + ABIE41_RS16885 0.52 +0.3 3,479,141 + ABIE41_RS16885 0.52 -0.5 3,479,141 + ABIE41_RS16885 0.52 +0.4 3,479,141 + ABIE41_RS16885 0.52 -1.8 3,479,142 - ABIE41_RS16885 0.52 +0.0 3,479,142 - ABIE41_RS16885 0.52 -0.4 3,479,142 - ABIE41_RS16885 0.52 +0.4 3,479,142 - ABIE41_RS16885 0.52 -0.7 3,479,142 - ABIE41_RS16885 0.52 +0.4 3,479,142 - ABIE41_RS16885 0.52 +1.6 3,479,142 - ABIE41_RS16885 0.52 +0.8 3,479,142 - ABIE41_RS16885 0.52 +1.6 3,479,142 - ABIE41_RS16885 0.52 +0.4 3,479,148 - ABIE41_RS16885 0.52 -0.6 3,479,226 - ABIE41_RS16885 0.57 -0.8 3,479,226 - ABIE41_RS16885 0.57 -0.3 3,479,622 + ABIE41_RS16885 0.83 +1.7 3,479,951 + -1.1 3,480,030 + +5.3 3,480,553 + +0.2 3,480,590 + -1.7 3,480,590 + +1.0 3,480,590 + -0.8 3,480,590 + +0.9 3,480,590 + -0.5
Or see this region's nucleotide sequence