Strain Fitness in Bosea sp. OAE506 around ABIE41_RS16650

Experiment: R2A with 3-octanone 5.31033333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS16645 and ABIE41_RS16650 are separated by 253 nucleotidesABIE41_RS16650 and ABIE41_RS16655 are separated by 38 nucleotides ABIE41_RS16645: ABIE41_RS16645 - LysR family transcriptional regulator, at 3,425,827 to 3,426,741 _RS16645 ABIE41_RS16650: ABIE41_RS16650 - twin-arginine translocation pathway signal, at 3,426,995 to 3,427,495 _RS16650 ABIE41_RS16655: ABIE41_RS16655 - ferric reductase-like transmembrane domain-containing protein, at 3,427,534 to 3,428,130 _RS16655 Position (kb) 3426 3427 3428Strain fitness (log2 ratio) -2 -1 0 1 2at 3426.089 kb on - strand, within ABIE41_RS16645at 3426.089 kb on - strand, within ABIE41_RS16645at 3426.185 kb on - strand, within ABIE41_RS16645at 3426.347 kb on - strand, within ABIE41_RS16645at 3426.397 kb on - strand, within ABIE41_RS16645at 3426.397 kb on - strand, within ABIE41_RS16645at 3426.436 kb on + strand, within ABIE41_RS16645at 3426.436 kb on + strand, within ABIE41_RS16645at 3426.437 kb on - strand, within ABIE41_RS16645at 3426.553 kb on + strand, within ABIE41_RS16645at 3426.554 kb on - strand, within ABIE41_RS16645at 3426.554 kb on - strand, within ABIE41_RS16645at 3426.643 kb on + strand, within ABIE41_RS16645at 3426.643 kb on + strand, within ABIE41_RS16645at 3426.643 kb on + strand, within ABIE41_RS16645at 3426.643 kb on + strand, within ABIE41_RS16645at 3426.643 kb on + strand, within ABIE41_RS16645at 3426.643 kb on + strand, within ABIE41_RS16645at 3426.643 kb on + strand, within ABIE41_RS16645at 3426.643 kb on + strand, within ABIE41_RS16645at 3426.644 kb on - strand, within ABIE41_RS16645at 3426.644 kb on - strand, within ABIE41_RS16645at 3426.644 kb on - strand, within ABIE41_RS16645at 3426.644 kb on - strand, within ABIE41_RS16645at 3426.644 kb on - strand, within ABIE41_RS16645at 3426.644 kb on - strand, within ABIE41_RS16645at 3426.644 kb on - strand, within ABIE41_RS16645at 3426.649 kb on + strand, within ABIE41_RS16645at 3426.649 kb on + strand, within ABIE41_RS16645at 3426.649 kb on + strand, within ABIE41_RS16645at 3426.649 kb on + strand, within ABIE41_RS16645at 3426.649 kb on + strand, within ABIE41_RS16645at 3426.650 kb on - strandat 3426.650 kb on - strandat 3426.650 kb on - strandat 3426.652 kb on + strandat 3426.892 kb on + strandat 3426.892 kb on + strandat 3427.148 kb on + strand, within ABIE41_RS16650at 3427.148 kb on + strand, within ABIE41_RS16650at 3427.148 kb on + strand, within ABIE41_RS16650at 3427.148 kb on + strand, within ABIE41_RS16650at 3427.149 kb on - strand, within ABIE41_RS16650at 3427.149 kb on - strand, within ABIE41_RS16650at 3427.149 kb on - strand, within ABIE41_RS16650at 3427.149 kb on - strand, within ABIE41_RS16650at 3427.270 kb on + strand, within ABIE41_RS16650at 3427.270 kb on + strand, within ABIE41_RS16650at 3427.397 kb on + strand, within ABIE41_RS16650at 3427.398 kb on - strand, within ABIE41_RS16650at 3427.609 kb on + strand, within ABIE41_RS16655at 3427.610 kb on - strand, within ABIE41_RS16655at 3427.610 kb on - strand, within ABIE41_RS16655at 3427.610 kb on - strand, within ABIE41_RS16655at 3427.610 kb on - strand, within ABIE41_RS16655at 3427.611 kb on + strand, within ABIE41_RS16655at 3427.682 kb on - strand, within ABIE41_RS16655at 3428.129 kb on - strandat 3428.180 kb on + strandat 3428.181 kb on - strandat 3428.181 kb on - strandat 3428.181 kb on - strandat 3428.181 kb on - strandat 3428.300 kb on - strandat 3428.437 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM
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3,426,089 - ABIE41_RS16645 0.29 +1.7
3,426,089 - ABIE41_RS16645 0.29 +0.1
3,426,185 - ABIE41_RS16645 0.39 -0.1
3,426,347 - ABIE41_RS16645 0.57 +0.1
3,426,397 - ABIE41_RS16645 0.62 +0.6
3,426,397 - ABIE41_RS16645 0.62 -0.4
3,426,436 + ABIE41_RS16645 0.67 -0.3
3,426,436 + ABIE41_RS16645 0.67 +0.4
3,426,437 - ABIE41_RS16645 0.67 +1.6
3,426,553 + ABIE41_RS16645 0.79 +0.3
3,426,554 - ABIE41_RS16645 0.79 +0.9
3,426,554 - ABIE41_RS16645 0.79 -1.8
3,426,643 + ABIE41_RS16645 0.89 +0.4
3,426,643 + ABIE41_RS16645 0.89 +0.4
3,426,643 + ABIE41_RS16645 0.89 -1.9
3,426,643 + ABIE41_RS16645 0.89 +0.1
3,426,643 + ABIE41_RS16645 0.89 -1.1
3,426,643 + ABIE41_RS16645 0.89 -1.3
3,426,643 + ABIE41_RS16645 0.89 -2.6
3,426,643 + ABIE41_RS16645 0.89 +0.1
3,426,644 - ABIE41_RS16645 0.89 +0.7
3,426,644 - ABIE41_RS16645 0.89 -0.3
3,426,644 - ABIE41_RS16645 0.89 -0.2
3,426,644 - ABIE41_RS16645 0.89 +0.8
3,426,644 - ABIE41_RS16645 0.89 -0.2
3,426,644 - ABIE41_RS16645 0.89 -2.3
3,426,644 - ABIE41_RS16645 0.89 +0.2
3,426,649 + ABIE41_RS16645 0.90 -0.9
3,426,649 + ABIE41_RS16645 0.90 +0.1
3,426,649 + ABIE41_RS16645 0.90 -1.9
3,426,649 + ABIE41_RS16645 0.90 -0.1
3,426,649 + ABIE41_RS16645 0.90 +0.0
3,426,650 - +0.8
3,426,650 - +1.7
3,426,650 - -0.3
3,426,652 + +0.4
3,426,892 + +0.0
3,426,892 + -0.2
3,427,148 + ABIE41_RS16650 0.31 -0.2
3,427,148 + ABIE41_RS16650 0.31 +0.1
3,427,148 + ABIE41_RS16650 0.31 -1.1
3,427,148 + ABIE41_RS16650 0.31 -2.7
3,427,149 - ABIE41_RS16650 0.31 -0.6
3,427,149 - ABIE41_RS16650 0.31 -2.2
3,427,149 - ABIE41_RS16650 0.31 +1.2
3,427,149 - ABIE41_RS16650 0.31 +0.2
3,427,270 + ABIE41_RS16650 0.55 +1.8
3,427,270 + ABIE41_RS16650 0.55 -0.3
3,427,397 + ABIE41_RS16650 0.80 +0.6
3,427,398 - ABIE41_RS16650 0.80 +0.7
3,427,609 + ABIE41_RS16655 0.13 +0.4
3,427,610 - ABIE41_RS16655 0.13 -0.5
3,427,610 - ABIE41_RS16655 0.13 -0.8
3,427,610 - ABIE41_RS16655 0.13 +0.2
3,427,610 - ABIE41_RS16655 0.13 -0.1
3,427,611 + ABIE41_RS16655 0.13 -1.3
3,427,682 - ABIE41_RS16655 0.25 -0.3
3,428,129 - +0.4
3,428,180 + -2.7
3,428,181 - -1.1
3,428,181 - +0.3
3,428,181 - +0.6
3,428,181 - +0.2
3,428,300 - -0.7
3,428,437 + +1.1

Or see this region's nucleotide sequence