Experiment: R2A with 3-octanone 5.31033333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS14925 and ABIE41_RS14930 are separated by 118 nucleotides ABIE41_RS14930 and ABIE41_RS14935 are separated by 103 nucleotides ABIE41_RS14935 and ABIE41_RS14940 are separated by 3 nucleotides
ABIE41_RS14925: ABIE41_RS14925 - aminotransferase, at 3,047,867 to 3,049,051
_RS14925
ABIE41_RS14930: ABIE41_RS14930 - Sir2 family NAD-dependent protein deacetylase, at 3,049,170 to 3,049,925
_RS14930
ABIE41_RS14935: ABIE41_RS14935 - DUF3429 domain-containing protein, at 3,050,029 to 3,050,484
_RS14935
ABIE41_RS14940: ABIE41_RS14940 - LysE family translocator, at 3,050,488 to 3,051,120
_RS14940
Position (kb)
3049
3050 Strain fitness (log2 ratio)
-1
0
1
2 at 3048.333 kb on + strand, within ABIE41_RS14925 at 3048.334 kb on - strand, within ABIE41_RS14925 at 3048.367 kb on + strand, within ABIE41_RS14925 at 3048.492 kb on + strand, within ABIE41_RS14925 at 3048.660 kb on + strand, within ABIE41_RS14925 at 3048.660 kb on + strand, within ABIE41_RS14925 at 3048.804 kb on + strand, within ABIE41_RS14925 at 3048.804 kb on + strand, within ABIE41_RS14925 at 3048.804 kb on + strand, within ABIE41_RS14925 at 3048.843 kb on + strand, within ABIE41_RS14925 at 3048.960 kb on + strand at 3048.961 kb on - strand at 3049.153 kb on + strand at 3049.401 kb on + strand, within ABIE41_RS14930 at 3049.401 kb on + strand, within ABIE41_RS14930 at 3049.402 kb on - strand, within ABIE41_RS14930 at 3049.557 kb on + strand, within ABIE41_RS14930 at 3049.557 kb on + strand, within ABIE41_RS14930 at 3049.557 kb on + strand, within ABIE41_RS14930 at 3049.557 kb on + strand, within ABIE41_RS14930 at 3049.557 kb on + strand, within ABIE41_RS14930 at 3049.558 kb on - strand, within ABIE41_RS14930 at 3049.558 kb on - strand, within ABIE41_RS14930 at 3049.558 kb on - strand, within ABIE41_RS14930 at 3049.558 kb on - strand, within ABIE41_RS14930 at 3049.558 kb on - strand, within ABIE41_RS14930 at 3049.558 kb on - strand, within ABIE41_RS14930 at 3049.558 kb on - strand, within ABIE41_RS14930 at 3049.558 kb on - strand, within ABIE41_RS14930 at 3049.558 kb on - strand, within ABIE41_RS14930 at 3049.780 kb on - strand, within ABIE41_RS14930 at 3049.987 kb on + strand at 3049.987 kb on + strand at 3049.987 kb on + strand at 3049.987 kb on + strand at 3049.988 kb on - strand at 3049.988 kb on - strand at 3050.179 kb on + strand, within ABIE41_RS14935 at 3050.180 kb on - strand, within ABIE41_RS14935 at 3050.237 kb on - strand, within ABIE41_RS14935 at 3050.386 kb on + strand, within ABIE41_RS14935 at 3050.387 kb on - strand, within ABIE41_RS14935 at 3050.387 kb on - strand, within ABIE41_RS14935 at 3050.413 kb on + strand, within ABIE41_RS14935 at 3050.873 kb on + strand, within ABIE41_RS14940 at 3050.874 kb on - strand, within ABIE41_RS14940
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM remove 3,048,333 + ABIE41_RS14925 0.39 +1.7 3,048,334 - ABIE41_RS14925 0.39 -0.7 3,048,367 + ABIE41_RS14925 0.42 +0.5 3,048,492 + ABIE41_RS14925 0.53 +0.0 3,048,660 + ABIE41_RS14925 0.67 +1.7 3,048,660 + ABIE41_RS14925 0.67 +0.9 3,048,804 + ABIE41_RS14925 0.79 -0.4 3,048,804 + ABIE41_RS14925 0.79 +0.6 3,048,804 + ABIE41_RS14925 0.79 -0.1 3,048,843 + ABIE41_RS14925 0.82 +0.3 3,048,960 + +0.3 3,048,961 - -0.8 3,049,153 + -0.5 3,049,401 + ABIE41_RS14930 0.31 +0.3 3,049,401 + ABIE41_RS14930 0.31 +0.5 3,049,402 - ABIE41_RS14930 0.31 +0.2 3,049,557 + ABIE41_RS14930 0.51 +0.7 3,049,557 + ABIE41_RS14930 0.51 +0.0 3,049,557 + ABIE41_RS14930 0.51 +0.1 3,049,557 + ABIE41_RS14930 0.51 +2.1 3,049,557 + ABIE41_RS14930 0.51 -1.7 3,049,558 - ABIE41_RS14930 0.51 +0.9 3,049,558 - ABIE41_RS14930 0.51 +1.2 3,049,558 - ABIE41_RS14930 0.51 +1.5 3,049,558 - ABIE41_RS14930 0.51 -0.1 3,049,558 - ABIE41_RS14930 0.51 +2.1 3,049,558 - ABIE41_RS14930 0.51 -0.8 3,049,558 - ABIE41_RS14930 0.51 +0.0 3,049,558 - ABIE41_RS14930 0.51 +0.3 3,049,558 - ABIE41_RS14930 0.51 -0.6 3,049,780 - ABIE41_RS14930 0.81 +1.0 3,049,987 + +0.3 3,049,987 + +0.8 3,049,987 + -1.2 3,049,987 + +2.4 3,049,988 - +0.6 3,049,988 - +1.4 3,050,179 + ABIE41_RS14935 0.33 +0.4 3,050,180 - ABIE41_RS14935 0.33 -0.2 3,050,237 - ABIE41_RS14935 0.46 +0.1 3,050,386 + ABIE41_RS14935 0.78 -0.2 3,050,387 - ABIE41_RS14935 0.79 -1.1 3,050,387 - ABIE41_RS14935 0.79 +0.6 3,050,413 + ABIE41_RS14935 0.84 +2.1 3,050,873 + ABIE41_RS14940 0.61 +0.5 3,050,874 - ABIE41_RS14940 0.61 -0.1
Or see this region's nucleotide sequence