Strain Fitness in Bosea sp. OAE506 around ABIE41_RS13780

Experiment: R2A with 3-octanone 5.31033333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS13770 and ABIE41_RS13775 are separated by 154 nucleotidesABIE41_RS13775 and ABIE41_RS13780 are separated by 79 nucleotidesABIE41_RS13780 and ABIE41_RS13785 are separated by 25 nucleotides ABIE41_RS13770: ABIE41_RS13770 - cellulose biosynthesis protein BcsS, at 2,824,541 to 2,825,299 _RS13770 ABIE41_RS13775: ABIE41_RS13775 - usg protein, at 2,825,454 to 2,825,723 _RS13775 ABIE41_RS13780: ABIE41_RS13780 - exopolysaccharide biosynthesis protein, at 2,825,803 to 2,826,402 _RS13780 ABIE41_RS13785: ABIE41_RS13785 - EAL domain-containing protein, at 2,826,428 to 2,828,647 _RS13785 Position (kb) 2825 2826 2827Strain fitness (log2 ratio) -2 -1 0 1 2at 2824.803 kb on + strand, within ABIE41_RS13770at 2824.803 kb on + strand, within ABIE41_RS13770at 2824.938 kb on + strand, within ABIE41_RS13770at 2824.938 kb on + strand, within ABIE41_RS13770at 2824.939 kb on - strand, within ABIE41_RS13770at 2824.939 kb on - strand, within ABIE41_RS13770at 2824.974 kb on + strand, within ABIE41_RS13770at 2825.004 kb on + strand, within ABIE41_RS13770at 2825.004 kb on + strand, within ABIE41_RS13770at 2825.252 kb on + strandat 2825.292 kb on + strandat 2825.293 kb on - strandat 2825.553 kb on + strand, within ABIE41_RS13775at 2825.553 kb on + strand, within ABIE41_RS13775at 2825.553 kb on + strand, within ABIE41_RS13775at 2825.554 kb on - strand, within ABIE41_RS13775at 2825.554 kb on - strand, within ABIE41_RS13775at 2825.554 kb on - strand, within ABIE41_RS13775at 2825.554 kb on - strand, within ABIE41_RS13775at 2825.555 kb on + strand, within ABIE41_RS13775at 2825.568 kb on + strand, within ABIE41_RS13775at 2825.568 kb on + strand, within ABIE41_RS13775at 2825.768 kb on - strandat 2826.166 kb on + strand, within ABIE41_RS13780at 2826.166 kb on + strand, within ABIE41_RS13780at 2826.167 kb on - strand, within ABIE41_RS13780at 2826.364 kb on + strandat 2826.666 kb on + strand, within ABIE41_RS13785at 2826.666 kb on + strand, within ABIE41_RS13785at 2826.667 kb on - strand, within ABIE41_RS13785at 2826.667 kb on - strand, within ABIE41_RS13785at 2826.667 kb on - strand, within ABIE41_RS13785at 2826.667 kb on - strand, within ABIE41_RS13785at 2826.667 kb on - strand, within ABIE41_RS13785at 2826.667 kb on - strand, within ABIE41_RS13785at 2826.667 kb on - strand, within ABIE41_RS13785at 2826.720 kb on + strand, within ABIE41_RS13785at 2826.721 kb on - strand, within ABIE41_RS13785at 2827.146 kb on + strand, within ABIE41_RS13785at 2827.146 kb on + strand, within ABIE41_RS13785at 2827.146 kb on + strand, within ABIE41_RS13785at 2827.147 kb on - strand, within ABIE41_RS13785

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM
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2,824,803 + ABIE41_RS13770 0.35 -0.0
2,824,803 + ABIE41_RS13770 0.35 +0.0
2,824,938 + ABIE41_RS13770 0.52 +0.9
2,824,938 + ABIE41_RS13770 0.52 +1.9
2,824,939 - ABIE41_RS13770 0.52 -0.5
2,824,939 - ABIE41_RS13770 0.52 -0.1
2,824,974 + ABIE41_RS13770 0.57 +0.1
2,825,004 + ABIE41_RS13770 0.61 +2.5
2,825,004 + ABIE41_RS13770 0.61 -0.5
2,825,252 + -1.9
2,825,292 + -0.1
2,825,293 - +0.0
2,825,553 + ABIE41_RS13775 0.37 +0.8
2,825,553 + ABIE41_RS13775 0.37 +2.1
2,825,553 + ABIE41_RS13775 0.37 -0.5
2,825,554 - ABIE41_RS13775 0.37 +0.6
2,825,554 - ABIE41_RS13775 0.37 -1.0
2,825,554 - ABIE41_RS13775 0.37 +0.1
2,825,554 - ABIE41_RS13775 0.37 -0.3
2,825,555 + ABIE41_RS13775 0.37 +1.2
2,825,568 + ABIE41_RS13775 0.42 +0.3
2,825,568 + ABIE41_RS13775 0.42 -2.6
2,825,768 - -2.1
2,826,166 + ABIE41_RS13780 0.60 -0.5
2,826,166 + ABIE41_RS13780 0.60 +0.9
2,826,167 - ABIE41_RS13780 0.61 +2.7
2,826,364 + -0.1
2,826,666 + ABIE41_RS13785 0.11 +2.0
2,826,666 + ABIE41_RS13785 0.11 +0.6
2,826,667 - ABIE41_RS13785 0.11 -0.1
2,826,667 - ABIE41_RS13785 0.11 +0.5
2,826,667 - ABIE41_RS13785 0.11 +0.5
2,826,667 - ABIE41_RS13785 0.11 -2.4
2,826,667 - ABIE41_RS13785 0.11 +0.5
2,826,667 - ABIE41_RS13785 0.11 +1.3
2,826,667 - ABIE41_RS13785 0.11 +0.1
2,826,720 + ABIE41_RS13785 0.13 -1.9
2,826,721 - ABIE41_RS13785 0.13 -0.2
2,827,146 + ABIE41_RS13785 0.32 -1.5
2,827,146 + ABIE41_RS13785 0.32 -0.6
2,827,146 + ABIE41_RS13785 0.32 -0.3
2,827,147 - ABIE41_RS13785 0.32 +2.1

Or see this region's nucleotide sequence