Strain Fitness in Bosea sp. OAE506 around ABIE41_RS03450

Experiment: R2A with 3-octanone 5.31033333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS03445 and ABIE41_RS03450 are separated by 229 nucleotidesABIE41_RS03450 and ABIE41_RS03455 are separated by 65 nucleotidesABIE41_RS03455 and ABIE41_RS03460 overlap by 1 nucleotides ABIE41_RS03445: ABIE41_RS03445 - fumarylacetoacetate hydrolase family protein, at 715,891 to 717,069 _RS03445 ABIE41_RS03450: ABIE41_RS03450 - sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB, at 717,299 to 718,597 _RS03450 ABIE41_RS03455: ABIE41_RS03455 - sn-glycerol-3-phosphate ABC transporter permease UgpA, at 718,663 to 719,544 _RS03455 ABIE41_RS03460: ABIE41_RS03460 - sn-glycerol-3-phosphate ABC transporter permease UgpE, at 719,544 to 720,392 _RS03460 Position (kb) 717 718 719Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 716.397 kb on + strand, within ABIE41_RS03445at 716.398 kb on - strand, within ABIE41_RS03445at 716.398 kb on - strand, within ABIE41_RS03445at 716.399 kb on - strand, within ABIE41_RS03445at 716.552 kb on + strand, within ABIE41_RS03445at 716.552 kb on + strand, within ABIE41_RS03445at 716.552 kb on + strand, within ABIE41_RS03445at 716.553 kb on - strand, within ABIE41_RS03445at 716.553 kb on - strand, within ABIE41_RS03445at 717.215 kb on + strandat 717.215 kb on + strandat 717.215 kb on + strandat 717.215 kb on + strandat 717.215 kb on + strandat 717.215 kb on + strandat 717.215 kb on + strandat 717.215 kb on + strandat 717.215 kb on + strandat 717.215 kb on + strandat 717.215 kb on + strandat 717.215 kb on + strandat 717.216 kb on - strandat 717.216 kb on - strandat 717.216 kb on - strandat 717.216 kb on - strandat 717.216 kb on - strandat 717.216 kb on - strandat 717.216 kb on - strandat 717.440 kb on + strand, within ABIE41_RS03450at 717.440 kb on + strand, within ABIE41_RS03450at 717.440 kb on + strand, within ABIE41_RS03450at 717.440 kb on + strand, within ABIE41_RS03450at 717.441 kb on - strand, within ABIE41_RS03450at 717.441 kb on - strand, within ABIE41_RS03450at 717.441 kb on - strand, within ABIE41_RS03450at 717.441 kb on - strand, within ABIE41_RS03450at 717.441 kb on - strand, within ABIE41_RS03450at 717.441 kb on - strand, within ABIE41_RS03450at 717.441 kb on - strand, within ABIE41_RS03450at 717.441 kb on - strand, within ABIE41_RS03450at 717.458 kb on + strand, within ABIE41_RS03450at 717.458 kb on + strand, within ABIE41_RS03450at 717.458 kb on + strand, within ABIE41_RS03450at 717.459 kb on - strand, within ABIE41_RS03450at 717.459 kb on - strand, within ABIE41_RS03450at 717.459 kb on - strand, within ABIE41_RS03450at 717.459 kb on - strand, within ABIE41_RS03450at 717.460 kb on + strand, within ABIE41_RS03450at 717.461 kb on - strand, within ABIE41_RS03450at 717.461 kb on - strand, within ABIE41_RS03450at 717.470 kb on + strand, within ABIE41_RS03450at 717.638 kb on + strand, within ABIE41_RS03450at 717.638 kb on + strand, within ABIE41_RS03450at 717.638 kb on + strand, within ABIE41_RS03450at 717.638 kb on + strand, within ABIE41_RS03450at 717.639 kb on - strand, within ABIE41_RS03450at 717.639 kb on - strand, within ABIE41_RS03450at 717.639 kb on - strand, within ABIE41_RS03450at 717.639 kb on - strand, within ABIE41_RS03450at 717.639 kb on - strand, within ABIE41_RS03450at 717.639 kb on - strand, within ABIE41_RS03450at 717.659 kb on + strand, within ABIE41_RS03450at 717.659 kb on + strand, within ABIE41_RS03450at 717.659 kb on + strand, within ABIE41_RS03450at 717.660 kb on - strand, within ABIE41_RS03450at 717.660 kb on - strand, within ABIE41_RS03450at 717.662 kb on + strand, within ABIE41_RS03450at 717.662 kb on + strand, within ABIE41_RS03450at 717.663 kb on - strand, within ABIE41_RS03450at 717.663 kb on - strand, within ABIE41_RS03450at 717.663 kb on - strand, within ABIE41_RS03450at 717.725 kb on + strand, within ABIE41_RS03450at 717.725 kb on + strand, within ABIE41_RS03450at 717.725 kb on + strand, within ABIE41_RS03450at 717.725 kb on + strand, within ABIE41_RS03450at 717.726 kb on - strand, within ABIE41_RS03450at 717.726 kb on - strand, within ABIE41_RS03450at 717.726 kb on - strand, within ABIE41_RS03450at 717.726 kb on - strand, within ABIE41_RS03450at 717.726 kb on - strand, within ABIE41_RS03450at 717.726 kb on - strand, within ABIE41_RS03450at 718.022 kb on + strand, within ABIE41_RS03450at 718.155 kb on - strand, within ABIE41_RS03450at 718.157 kb on + strand, within ABIE41_RS03450at 718.158 kb on - strand, within ABIE41_RS03450at 718.158 kb on - strand, within ABIE41_RS03450at 718.241 kb on + strand, within ABIE41_RS03450at 718.242 kb on - strand, within ABIE41_RS03450at 718.242 kb on - strand, within ABIE41_RS03450at 718.242 kb on - strand, within ABIE41_RS03450at 718.316 kb on + strand, within ABIE41_RS03450at 718.317 kb on - strand, within ABIE41_RS03450at 718.331 kb on - strand, within ABIE41_RS03450at 718.340 kb on + strand, within ABIE41_RS03450at 718.340 kb on + strand, within ABIE41_RS03450at 718.341 kb on - strand, within ABIE41_RS03450at 718.341 kb on - strand, within ABIE41_RS03450at 718.341 kb on - strand, within ABIE41_RS03450at 718.341 kb on - strand, within ABIE41_RS03450at 718.368 kb on - strand, within ABIE41_RS03450at 718.368 kb on - strand, within ABIE41_RS03450at 718.368 kb on - strand, within ABIE41_RS03450at 718.368 kb on - strand, within ABIE41_RS03450at 718.678 kb on + strandat 718.679 kb on - strandat 718.679 kb on - strandat 718.679 kb on - strandat 718.747 kb on + strandat 718.748 kb on - strandat 718.748 kb on - strandat 718.748 kb on - strandat 718.834 kb on + strand, within ABIE41_RS03455at 718.834 kb on + strand, within ABIE41_RS03455at 718.834 kb on + strand, within ABIE41_RS03455at 718.834 kb on + strand, within ABIE41_RS03455at 718.834 kb on + strand, within ABIE41_RS03455at 718.834 kb on + strand, within ABIE41_RS03455at 718.835 kb on - strand, within ABIE41_RS03455at 718.835 kb on - strand, within ABIE41_RS03455at 718.835 kb on - strand, within ABIE41_RS03455at 718.978 kb on + strand, within ABIE41_RS03455at 718.978 kb on + strand, within ABIE41_RS03455at 718.979 kb on - strand, within ABIE41_RS03455at 718.979 kb on - strand, within ABIE41_RS03455at 718.979 kb on - strand, within ABIE41_RS03455at 719.002 kb on + strand, within ABIE41_RS03455at 719.003 kb on - strand, within ABIE41_RS03455at 719.003 kb on - strand, within ABIE41_RS03455at 719.174 kb on - strand, within ABIE41_RS03455at 719.174 kb on - strand, within ABIE41_RS03455at 719.333 kb on - strand, within ABIE41_RS03455at 719.333 kb on - strand, within ABIE41_RS03455at 719.333 kb on - strand, within ABIE41_RS03455at 719.333 kb on - strand, within ABIE41_RS03455at 719.410 kb on + strand, within ABIE41_RS03455at 719.410 kb on + strand, within ABIE41_RS03455at 719.410 kb on + strand, within ABIE41_RS03455at 719.410 kb on + strand, within ABIE41_RS03455at 719.411 kb on - strand, within ABIE41_RS03455at 719.411 kb on - strand, within ABIE41_RS03455at 719.484 kb on + strandat 719.539 kb on + strandat 719.539 kb on + strandat 719.539 kb on + strandat 719.539 kb on + strandat 719.539 kb on + strandat 719.539 kb on + strandat 719.540 kb on - strandat 719.540 kb on - strandat 719.540 kb on - strandat 719.540 kb on - strandat 719.540 kb on - strandat 719.580 kb on + strandat 719.580 kb on + strandat 719.581 kb on - strandat 719.581 kb on - strandat 719.581 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM
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716,397 + ABIE41_RS03445 0.43 +1.3
716,398 - ABIE41_RS03445 0.43 -2.9
716,398 - ABIE41_RS03445 0.43 +0.0
716,399 - ABIE41_RS03445 0.43 -0.7
716,552 + ABIE41_RS03445 0.56 +0.1
716,552 + ABIE41_RS03445 0.56 -1.7
716,552 + ABIE41_RS03445 0.56 -0.9
716,553 - ABIE41_RS03445 0.56 +0.7
716,553 - ABIE41_RS03445 0.56 +0.2
717,215 + -0.2
717,215 + -0.5
717,215 + -0.7
717,215 + +0.2
717,215 + -0.6
717,215 + -1.3
717,215 + -1.4
717,215 + +1.5
717,215 + -0.5
717,215 + -0.3
717,215 + -0.5
717,215 + -0.7
717,216 - +1.0
717,216 - +0.0
717,216 - +1.7
717,216 - +0.1
717,216 - +0.2
717,216 - -1.1
717,216 - +0.3
717,440 + ABIE41_RS03450 0.11 -2.1
717,440 + ABIE41_RS03450 0.11 -1.9
717,440 + ABIE41_RS03450 0.11 +0.2
717,440 + ABIE41_RS03450 0.11 +0.6
717,441 - ABIE41_RS03450 0.11 +0.4
717,441 - ABIE41_RS03450 0.11 -0.3
717,441 - ABIE41_RS03450 0.11 +1.6
717,441 - ABIE41_RS03450 0.11 +2.7
717,441 - ABIE41_RS03450 0.11 -0.8
717,441 - ABIE41_RS03450 0.11 -0.0
717,441 - ABIE41_RS03450 0.11 +1.0
717,441 - ABIE41_RS03450 0.11 -1.2
717,458 + ABIE41_RS03450 0.12 -0.5
717,458 + ABIE41_RS03450 0.12 -1.0
717,458 + ABIE41_RS03450 0.12 +0.7
717,459 - ABIE41_RS03450 0.12 +0.1
717,459 - ABIE41_RS03450 0.12 -0.5
717,459 - ABIE41_RS03450 0.12 +0.4
717,459 - ABIE41_RS03450 0.12 -0.9
717,460 + ABIE41_RS03450 0.12 -1.1
717,461 - ABIE41_RS03450 0.12 -1.4
717,461 - ABIE41_RS03450 0.12 -0.3
717,470 + ABIE41_RS03450 0.13 +2.0
717,638 + ABIE41_RS03450 0.26 +0.8
717,638 + ABIE41_RS03450 0.26 -0.7
717,638 + ABIE41_RS03450 0.26 +0.3
717,638 + ABIE41_RS03450 0.26 -0.9
717,639 - ABIE41_RS03450 0.26 +0.0
717,639 - ABIE41_RS03450 0.26 -0.2
717,639 - ABIE41_RS03450 0.26 -2.1
717,639 - ABIE41_RS03450 0.26 +0.2
717,639 - ABIE41_RS03450 0.26 +0.8
717,639 - ABIE41_RS03450 0.26 -0.5
717,659 + ABIE41_RS03450 0.28 +0.3
717,659 + ABIE41_RS03450 0.28 +2.0
717,659 + ABIE41_RS03450 0.28 -1.3
717,660 - ABIE41_RS03450 0.28 +0.3
717,660 - ABIE41_RS03450 0.28 +0.5
717,662 + ABIE41_RS03450 0.28 -2.2
717,662 + ABIE41_RS03450 0.28 +2.5
717,663 - ABIE41_RS03450 0.28 -0.3
717,663 - ABIE41_RS03450 0.28 +0.9
717,663 - ABIE41_RS03450 0.28 +0.7
717,725 + ABIE41_RS03450 0.33 +0.7
717,725 + ABIE41_RS03450 0.33 -0.1
717,725 + ABIE41_RS03450 0.33 +0.9
717,725 + ABIE41_RS03450 0.33 +0.4
717,726 - ABIE41_RS03450 0.33 +0.1
717,726 - ABIE41_RS03450 0.33 -0.7
717,726 - ABIE41_RS03450 0.33 -0.3
717,726 - ABIE41_RS03450 0.33 -0.0
717,726 - ABIE41_RS03450 0.33 -0.1
717,726 - ABIE41_RS03450 0.33 -0.6
718,022 + ABIE41_RS03450 0.56 -1.3
718,155 - ABIE41_RS03450 0.66 +0.4
718,157 + ABIE41_RS03450 0.66 -0.1
718,158 - ABIE41_RS03450 0.66 +1.8
718,158 - ABIE41_RS03450 0.66 -0.4
718,241 + ABIE41_RS03450 0.73 +0.3
718,242 - ABIE41_RS03450 0.73 -0.2
718,242 - ABIE41_RS03450 0.73 +0.5
718,242 - ABIE41_RS03450 0.73 -0.9
718,316 + ABIE41_RS03450 0.78 -1.1
718,317 - ABIE41_RS03450 0.78 -0.7
718,331 - ABIE41_RS03450 0.79 -0.1
718,340 + ABIE41_RS03450 0.80 +0.3
718,340 + ABIE41_RS03450 0.80 -1.1
718,341 - ABIE41_RS03450 0.80 -0.2
718,341 - ABIE41_RS03450 0.80 +1.1
718,341 - ABIE41_RS03450 0.80 -1.5
718,341 - ABIE41_RS03450 0.80 +0.3
718,368 - ABIE41_RS03450 0.82 -2.5
718,368 - ABIE41_RS03450 0.82 -0.2
718,368 - ABIE41_RS03450 0.82 -0.0
718,368 - ABIE41_RS03450 0.82 -0.3
718,678 + -0.9
718,679 - +1.1
718,679 - +0.5
718,679 - -0.1
718,747 + -0.6
718,748 - +0.6
718,748 - -0.6
718,748 - +1.5
718,834 + ABIE41_RS03455 0.19 +0.9
718,834 + ABIE41_RS03455 0.19 -0.2
718,834 + ABIE41_RS03455 0.19 +0.5
718,834 + ABIE41_RS03455 0.19 -1.7
718,834 + ABIE41_RS03455 0.19 -0.5
718,834 + ABIE41_RS03455 0.19 +1.6
718,835 - ABIE41_RS03455 0.20 +0.9
718,835 - ABIE41_RS03455 0.20 +0.3
718,835 - ABIE41_RS03455 0.20 +0.2
718,978 + ABIE41_RS03455 0.36 +0.5
718,978 + ABIE41_RS03455 0.36 +0.8
718,979 - ABIE41_RS03455 0.36 -0.8
718,979 - ABIE41_RS03455 0.36 +0.1
718,979 - ABIE41_RS03455 0.36 +0.5
719,002 + ABIE41_RS03455 0.38 +0.7
719,003 - ABIE41_RS03455 0.39 -0.6
719,003 - ABIE41_RS03455 0.39 +0.4
719,174 - ABIE41_RS03455 0.58 +0.6
719,174 - ABIE41_RS03455 0.58 -0.1
719,333 - ABIE41_RS03455 0.76 +1.0
719,333 - ABIE41_RS03455 0.76 -1.3
719,333 - ABIE41_RS03455 0.76 -0.4
719,333 - ABIE41_RS03455 0.76 +0.6
719,410 + ABIE41_RS03455 0.85 +0.0
719,410 + ABIE41_RS03455 0.85 +0.2
719,410 + ABIE41_RS03455 0.85 -0.8
719,410 + ABIE41_RS03455 0.85 +1.5
719,411 - ABIE41_RS03455 0.85 +0.2
719,411 - ABIE41_RS03455 0.85 -0.6
719,484 + -0.2
719,539 + +0.3
719,539 + -1.4
719,539 + +1.3
719,539 + +0.2
719,539 + +0.2
719,539 + -0.0
719,540 - +3.3
719,540 - -0.9
719,540 - -0.1
719,540 - -2.4
719,540 - -0.1
719,580 + +0.9
719,580 + -0.0
719,581 - -0.7
719,581 - +1.0
719,581 - -0.2

Or see this region's nucleotide sequence