Experiment: R2A with 3-octanone 5.31033333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS03355 and ABIE41_RS03360 are separated by 2 nucleotides ABIE41_RS03360 and ABIE41_RS03365 are separated by 3 nucleotides ABIE41_RS03365 and ABIE41_RS03370 are separated by 180 nucleotides
ABIE41_RS03355: ABIE41_RS03355 - ABC transporter permease, at 699,389 to 700,489
_RS03355
ABIE41_RS03360: ABIE41_RS03360 - ABC transporter permease, at 700,492 to 701,466
_RS03360
ABIE41_RS03365: ABIE41_RS03365 - cytidine deaminase, at 701,470 to 701,889
_RS03365
ABIE41_RS03370: ABIE41_RS03370 - purine-nucleoside phosphorylase, at 702,070 to 702,882
_RS03370
Position (kb) 700
701
702 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 699.575 kb on + strand, within ABIE41_RS03355 at 699.575 kb on + strand, within ABIE41_RS03355 at 699.576 kb on - strand, within ABIE41_RS03355 at 699.578 kb on + strand, within ABIE41_RS03355 at 699.578 kb on + strand, within ABIE41_RS03355 at 699.578 kb on + strand, within ABIE41_RS03355 at 699.578 kb on + strand, within ABIE41_RS03355 at 699.579 kb on - strand, within ABIE41_RS03355 at 699.579 kb on - strand, within ABIE41_RS03355 at 699.637 kb on - strand, within ABIE41_RS03355 at 699.826 kb on + strand, within ABIE41_RS03355 at 699.826 kb on + strand, within ABIE41_RS03355 at 699.827 kb on - strand, within ABIE41_RS03355 at 699.869 kb on + strand, within ABIE41_RS03355 at 699.869 kb on + strand, within ABIE41_RS03355 at 699.869 kb on + strand, within ABIE41_RS03355 at 699.869 kb on + strand, within ABIE41_RS03355 at 699.869 kb on + strand, within ABIE41_RS03355 at 699.870 kb on - strand, within ABIE41_RS03355 at 699.870 kb on - strand, within ABIE41_RS03355 at 700.334 kb on + strand, within ABIE41_RS03355 at 700.334 kb on + strand, within ABIE41_RS03355 at 700.334 kb on + strand, within ABIE41_RS03355 at 700.942 kb on + strand, within ABIE41_RS03360 at 700.942 kb on + strand, within ABIE41_RS03360 at 700.942 kb on + strand, within ABIE41_RS03360 at 700.942 kb on + strand, within ABIE41_RS03360 at 700.942 kb on + strand, within ABIE41_RS03360 at 700.942 kb on + strand, within ABIE41_RS03360 at 700.943 kb on - strand, within ABIE41_RS03360 at 700.943 kb on - strand, within ABIE41_RS03360 at 700.943 kb on - strand, within ABIE41_RS03360 at 700.978 kb on + strand, within ABIE41_RS03360 at 701.158 kb on + strand, within ABIE41_RS03360 at 701.159 kb on - strand, within ABIE41_RS03360 at 701.159 kb on - strand, within ABIE41_RS03360 at 701.159 kb on - strand, within ABIE41_RS03360 at 701.196 kb on + strand, within ABIE41_RS03360 at 701.196 kb on + strand, within ABIE41_RS03360 at 701.196 kb on + strand, within ABIE41_RS03360 at 701.197 kb on - strand, within ABIE41_RS03360 at 701.197 kb on - strand, within ABIE41_RS03360 at 701.197 kb on - strand, within ABIE41_RS03360 at 701.197 kb on - strand, within ABIE41_RS03360 at 701.197 kb on - strand, within ABIE41_RS03360 at 701.378 kb on - strand at 701.378 kb on - strand at 701.378 kb on - strand at 701.450 kb on - strand at 701.453 kb on + strand at 701.453 kb on + strand at 701.453 kb on + strand at 701.453 kb on + strand at 701.453 kb on + strand at 701.453 kb on + strand at 701.454 kb on - strand at 701.454 kb on - strand at 701.454 kb on - strand at 701.454 kb on - strand at 701.542 kb on + strand, within ABIE41_RS03365 at 701.543 kb on - strand, within ABIE41_RS03365 at 701.543 kb on - strand, within ABIE41_RS03365 at 701.551 kb on + strand, within ABIE41_RS03365 at 701.603 kb on - strand, within ABIE41_RS03365 at 702.063 kb on + strand at 702.064 kb on - strand at 702.064 kb on - strand at 702.187 kb on - strand, within ABIE41_RS03370 at 702.187 kb on - strand, within ABIE41_RS03370 at 702.211 kb on + strand, within ABIE41_RS03370 at 702.268 kb on + strand, within ABIE41_RS03370 at 702.268 kb on + strand, within ABIE41_RS03370 at 702.268 kb on + strand, within ABIE41_RS03370 at 702.269 kb on - strand, within ABIE41_RS03370 at 702.269 kb on - strand, within ABIE41_RS03370 at 702.269 kb on - strand, within ABIE41_RS03370 at 702.269 kb on - strand, within ABIE41_RS03370 at 702.269 kb on - strand, within ABIE41_RS03370 at 702.269 kb on - strand, within ABIE41_RS03370 at 702.304 kb on + strand, within ABIE41_RS03370 at 702.304 kb on + strand, within ABIE41_RS03370 at 702.304 kb on + strand, within ABIE41_RS03370 at 702.304 kb on + strand, within ABIE41_RS03370 at 702.304 kb on + strand, within ABIE41_RS03370 at 702.304 kb on + strand, within ABIE41_RS03370 at 702.304 kb on + strand, within ABIE41_RS03370 at 702.304 kb on + strand, within ABIE41_RS03370 at 702.322 kb on + strand, within ABIE41_RS03370 at 702.322 kb on + strand, within ABIE41_RS03370 at 702.322 kb on + strand, within ABIE41_RS03370 at 702.323 kb on - strand, within ABIE41_RS03370 at 702.325 kb on + strand, within ABIE41_RS03370 at 702.325 kb on + strand, within ABIE41_RS03370 at 702.325 kb on + strand, within ABIE41_RS03370 at 702.325 kb on + strand, within ABIE41_RS03370 at 702.325 kb on + strand, within ABIE41_RS03370 at 702.325 kb on + strand, within ABIE41_RS03370 at 702.325 kb on + strand, within ABIE41_RS03370 at 702.326 kb on - strand, within ABIE41_RS03370 at 702.326 kb on - strand, within ABIE41_RS03370 at 702.326 kb on - strand, within ABIE41_RS03370 at 702.326 kb on - strand, within ABIE41_RS03370 at 702.326 kb on - strand, within ABIE41_RS03370 at 702.380 kb on + strand, within ABIE41_RS03370 at 702.380 kb on + strand, within ABIE41_RS03370
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM remove 699,575 + ABIE41_RS03355 0.17 +2.6 699,575 + ABIE41_RS03355 0.17 -0.1 699,576 - ABIE41_RS03355 0.17 -2.3 699,578 + ABIE41_RS03355 0.17 +1.0 699,578 + ABIE41_RS03355 0.17 -0.8 699,578 + ABIE41_RS03355 0.17 +0.7 699,578 + ABIE41_RS03355 0.17 -1.0 699,579 - ABIE41_RS03355 0.17 -0.6 699,579 - ABIE41_RS03355 0.17 -0.1 699,637 - ABIE41_RS03355 0.23 -0.0 699,826 + ABIE41_RS03355 0.40 +0.0 699,826 + ABIE41_RS03355 0.40 -2.0 699,827 - ABIE41_RS03355 0.40 -2.5 699,869 + ABIE41_RS03355 0.44 +0.1 699,869 + ABIE41_RS03355 0.44 +0.0 699,869 + ABIE41_RS03355 0.44 -2.1 699,869 + ABIE41_RS03355 0.44 -0.3 699,869 + ABIE41_RS03355 0.44 +1.3 699,870 - ABIE41_RS03355 0.44 -0.9 699,870 - ABIE41_RS03355 0.44 -0.9 700,334 + ABIE41_RS03355 0.86 -0.4 700,334 + ABIE41_RS03355 0.86 -0.5 700,334 + ABIE41_RS03355 0.86 +0.4 700,942 + ABIE41_RS03360 0.46 -1.8 700,942 + ABIE41_RS03360 0.46 +0.3 700,942 + ABIE41_RS03360 0.46 +0.5 700,942 + ABIE41_RS03360 0.46 +0.4 700,942 + ABIE41_RS03360 0.46 +1.5 700,942 + ABIE41_RS03360 0.46 +0.1 700,943 - ABIE41_RS03360 0.46 -0.3 700,943 - ABIE41_RS03360 0.46 -0.7 700,943 - ABIE41_RS03360 0.46 -0.4 700,978 + ABIE41_RS03360 0.50 +0.1 701,158 + ABIE41_RS03360 0.68 -2.3 701,159 - ABIE41_RS03360 0.68 -1.2 701,159 - ABIE41_RS03360 0.68 +0.3 701,159 - ABIE41_RS03360 0.68 -2.5 701,196 + ABIE41_RS03360 0.72 +0.0 701,196 + ABIE41_RS03360 0.72 +1.4 701,196 + ABIE41_RS03360 0.72 +1.1 701,197 - ABIE41_RS03360 0.72 +0.2 701,197 - ABIE41_RS03360 0.72 -0.2 701,197 - ABIE41_RS03360 0.72 -0.5 701,197 - ABIE41_RS03360 0.72 -0.7 701,197 - ABIE41_RS03360 0.72 +0.2 701,378 - +0.2 701,378 - -0.1 701,378 - -0.3 701,450 - +0.2 701,453 + +0.1 701,453 + -2.4 701,453 + +0.0 701,453 + +0.6 701,453 + +1.1 701,453 + +0.5 701,454 - +0.7 701,454 - +1.2 701,454 - -0.2 701,454 - +0.4 701,542 + ABIE41_RS03365 0.17 -1.5 701,543 - ABIE41_RS03365 0.17 -1.0 701,543 - ABIE41_RS03365 0.17 -0.5 701,551 + ABIE41_RS03365 0.19 -0.7 701,603 - ABIE41_RS03365 0.32 +1.3 702,063 + +0.7 702,064 - +0.7 702,064 - +0.5 702,187 - ABIE41_RS03370 0.14 +0.3 702,187 - ABIE41_RS03370 0.14 -0.0 702,211 + ABIE41_RS03370 0.17 -1.4 702,268 + ABIE41_RS03370 0.24 -2.8 702,268 + ABIE41_RS03370 0.24 -0.7 702,268 + ABIE41_RS03370 0.24 -0.3 702,269 - ABIE41_RS03370 0.24 +0.4 702,269 - ABIE41_RS03370 0.24 -1.1 702,269 - ABIE41_RS03370 0.24 +2.1 702,269 - ABIE41_RS03370 0.24 +0.6 702,269 - ABIE41_RS03370 0.24 -0.7 702,269 - ABIE41_RS03370 0.24 +0.1 702,304 + ABIE41_RS03370 0.29 +0.2 702,304 + ABIE41_RS03370 0.29 -0.2 702,304 + ABIE41_RS03370 0.29 -0.3 702,304 + ABIE41_RS03370 0.29 +1.7 702,304 + ABIE41_RS03370 0.29 -0.8 702,304 + ABIE41_RS03370 0.29 -0.5 702,304 + ABIE41_RS03370 0.29 +0.3 702,304 + ABIE41_RS03370 0.29 +0.1 702,322 + ABIE41_RS03370 0.31 -0.7 702,322 + ABIE41_RS03370 0.31 +0.1 702,322 + ABIE41_RS03370 0.31 -0.7 702,323 - ABIE41_RS03370 0.31 -2.1 702,325 + ABIE41_RS03370 0.31 +0.2 702,325 + ABIE41_RS03370 0.31 +1.1 702,325 + ABIE41_RS03370 0.31 -2.5 702,325 + ABIE41_RS03370 0.31 -0.4 702,325 + ABIE41_RS03370 0.31 +1.5 702,325 + ABIE41_RS03370 0.31 -0.5 702,325 + ABIE41_RS03370 0.31 +0.1 702,326 - ABIE41_RS03370 0.31 +1.9 702,326 - ABIE41_RS03370 0.31 -0.5 702,326 - ABIE41_RS03370 0.31 -0.5 702,326 - ABIE41_RS03370 0.31 +1.5 702,326 - ABIE41_RS03370 0.31 -0.2 702,380 + ABIE41_RS03370 0.38 +0.1 702,380 + ABIE41_RS03370 0.38 -0.0
Or see this region's nucleotide sequence