Experiment: R2A with 3-octanone 5.31033333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS03155 and ABIE41_RS03160 are separated by 68 nucleotides ABIE41_RS03160 and ABIE41_RS03165 are separated by 178 nucleotides
ABIE41_RS03155: ABIE41_RS03155 - YifB family Mg chelatase-like AAA ATPase, at 659,451 to 660,989
_RS03155
ABIE41_RS03160: ABIE41_RS03160 - TRAP transporter permease, at 661,058 to 663,223
_RS03160
ABIE41_RS03165: ABIE41_RS03165 - TAXI family TRAP transporter solute-binding subunit, at 663,402 to 664,382
_RS03165
Position (kb) 661
662
663
664 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 660.604 kb on + strand, within ABIE41_RS03155 at 660.604 kb on + strand, within ABIE41_RS03155 at 660.605 kb on - strand, within ABIE41_RS03155 at 660.605 kb on - strand, within ABIE41_RS03155 at 660.605 kb on - strand, within ABIE41_RS03155 at 660.682 kb on + strand, within ABIE41_RS03155 at 660.752 kb on - strand, within ABIE41_RS03155 at 660.758 kb on + strand, within ABIE41_RS03155 at 661.106 kb on + strand at 661.375 kb on + strand, within ABIE41_RS03160 at 661.375 kb on + strand, within ABIE41_RS03160 at 661.375 kb on + strand, within ABIE41_RS03160 at 661.375 kb on + strand, within ABIE41_RS03160 at 661.375 kb on + strand, within ABIE41_RS03160 at 661.376 kb on - strand, within ABIE41_RS03160 at 661.376 kb on - strand, within ABIE41_RS03160 at 661.376 kb on - strand, within ABIE41_RS03160 at 661.476 kb on + strand, within ABIE41_RS03160 at 661.476 kb on + strand, within ABIE41_RS03160 at 661.479 kb on + strand, within ABIE41_RS03160 at 661.479 kb on + strand, within ABIE41_RS03160 at 661.479 kb on + strand, within ABIE41_RS03160 at 661.479 kb on + strand, within ABIE41_RS03160 at 661.479 kb on + strand, within ABIE41_RS03160 at 661.479 kb on + strand, within ABIE41_RS03160 at 661.479 kb on + strand, within ABIE41_RS03160 at 661.479 kb on + strand, within ABIE41_RS03160 at 661.479 kb on + strand, within ABIE41_RS03160 at 661.479 kb on + strand, within ABIE41_RS03160 at 661.480 kb on - strand, within ABIE41_RS03160 at 661.480 kb on - strand, within ABIE41_RS03160 at 661.559 kb on + strand, within ABIE41_RS03160 at 661.560 kb on + strand, within ABIE41_RS03160 at 661.560 kb on + strand, within ABIE41_RS03160 at 661.560 kb on + strand, within ABIE41_RS03160 at 661.560 kb on + strand, within ABIE41_RS03160 at 661.560 kb on + strand, within ABIE41_RS03160 at 661.560 kb on + strand, within ABIE41_RS03160 at 661.560 kb on + strand, within ABIE41_RS03160 at 661.560 kb on + strand, within ABIE41_RS03160 at 661.560 kb on + strand, within ABIE41_RS03160 at 661.561 kb on - strand, within ABIE41_RS03160 at 661.561 kb on - strand, within ABIE41_RS03160 at 661.561 kb on - strand, within ABIE41_RS03160 at 661.561 kb on - strand, within ABIE41_RS03160 at 661.561 kb on - strand, within ABIE41_RS03160 at 661.561 kb on - strand, within ABIE41_RS03160 at 661.561 kb on - strand, within ABIE41_RS03160 at 661.561 kb on - strand, within ABIE41_RS03160 at 661.561 kb on - strand, within ABIE41_RS03160 at 661.561 kb on - strand, within ABIE41_RS03160 at 661.806 kb on + strand, within ABIE41_RS03160 at 662.067 kb on + strand, within ABIE41_RS03160 at 662.067 kb on + strand, within ABIE41_RS03160 at 662.068 kb on - strand, within ABIE41_RS03160 at 662.068 kb on - strand, within ABIE41_RS03160 at 662.068 kb on - strand, within ABIE41_RS03160 at 662.268 kb on + strand, within ABIE41_RS03160 at 662.269 kb on - strand, within ABIE41_RS03160 at 662.382 kb on + strand, within ABIE41_RS03160 at 662.382 kb on + strand, within ABIE41_RS03160 at 662.382 kb on + strand, within ABIE41_RS03160 at 662.383 kb on - strand, within ABIE41_RS03160 at 662.383 kb on - strand, within ABIE41_RS03160 at 662.383 kb on - strand, within ABIE41_RS03160 at 662.383 kb on - strand, within ABIE41_RS03160 at 662.509 kb on - strand, within ABIE41_RS03160 at 662.601 kb on + strand, within ABIE41_RS03160 at 662.601 kb on + strand, within ABIE41_RS03160 at 662.601 kb on + strand, within ABIE41_RS03160 at 662.602 kb on - strand, within ABIE41_RS03160 at 662.602 kb on - strand, within ABIE41_RS03160 at 662.602 kb on - strand, within ABIE41_RS03160 at 662.602 kb on - strand, within ABIE41_RS03160 at 662.631 kb on + strand, within ABIE41_RS03160 at 662.631 kb on + strand, within ABIE41_RS03160 at 662.631 kb on + strand, within ABIE41_RS03160 at 662.632 kb on - strand, within ABIE41_RS03160 at 662.632 kb on - strand, within ABIE41_RS03160 at 662.632 kb on - strand, within ABIE41_RS03160 at 662.652 kb on + strand, within ABIE41_RS03160 at 662.652 kb on + strand, within ABIE41_RS03160 at 662.652 kb on + strand, within ABIE41_RS03160 at 662.653 kb on - strand, within ABIE41_RS03160 at 662.653 kb on - strand, within ABIE41_RS03160 at 662.653 kb on - strand, within ABIE41_RS03160 at 662.653 kb on - strand, within ABIE41_RS03160 at 662.653 kb on - strand, within ABIE41_RS03160 at 662.653 kb on - strand, within ABIE41_RS03160 at 662.730 kb on + strand, within ABIE41_RS03160 at 662.730 kb on + strand, within ABIE41_RS03160 at 662.730 kb on + strand, within ABIE41_RS03160 at 662.730 kb on + strand, within ABIE41_RS03160 at 662.730 kb on + strand, within ABIE41_RS03160 at 662.730 kb on + strand, within ABIE41_RS03160 at 662.730 kb on + strand, within ABIE41_RS03160 at 662.730 kb on + strand, within ABIE41_RS03160 at 662.730 kb on + strand, within ABIE41_RS03160 at 662.731 kb on - strand, within ABIE41_RS03160 at 662.731 kb on - strand, within ABIE41_RS03160 at 662.731 kb on - strand, within ABIE41_RS03160 at 662.731 kb on - strand, within ABIE41_RS03160 at 662.731 kb on - strand, within ABIE41_RS03160 at 662.731 kb on - strand, within ABIE41_RS03160 at 662.731 kb on - strand, within ABIE41_RS03160 at 662.886 kb on + strand, within ABIE41_RS03160 at 662.886 kb on + strand, within ABIE41_RS03160 at 662.886 kb on + strand, within ABIE41_RS03160 at 662.886 kb on + strand, within ABIE41_RS03160 at 662.886 kb on + strand, within ABIE41_RS03160 at 662.886 kb on + strand, within ABIE41_RS03160 at 662.886 kb on + strand, within ABIE41_RS03160 at 662.886 kb on + strand, within ABIE41_RS03160 at 662.886 kb on + strand, within ABIE41_RS03160 at 662.887 kb on - strand, within ABIE41_RS03160 at 662.887 kb on - strand, within ABIE41_RS03160 at 662.887 kb on - strand, within ABIE41_RS03160 at 662.887 kb on - strand, within ABIE41_RS03160 at 662.887 kb on - strand, within ABIE41_RS03160 at 662.928 kb on + strand, within ABIE41_RS03160 at 662.928 kb on + strand, within ABIE41_RS03160 at 662.929 kb on - strand, within ABIE41_RS03160 at 662.929 kb on - strand, within ABIE41_RS03160 at 662.929 kb on - strand, within ABIE41_RS03160 at 662.929 kb on - strand, within ABIE41_RS03160 at 662.967 kb on + strand, within ABIE41_RS03160 at 663.084 kb on + strand at 663.084 kb on + strand at 663.084 kb on + strand at 663.085 kb on - strand at 663.087 kb on + strand at 663.087 kb on + strand at 663.087 kb on + strand at 663.088 kb on - strand at 663.088 kb on - strand at 663.088 kb on - strand at 663.402 kb on + strand at 663.403 kb on + strand at 663.403 kb on + strand at 663.403 kb on + strand at 663.403 kb on + strand at 663.403 kb on + strand at 663.403 kb on + strand at 663.403 kb on + strand at 663.403 kb on + strand at 663.403 kb on + strand at 663.404 kb on - strand at 663.404 kb on - strand at 663.404 kb on - strand at 663.404 kb on - strand at 663.404 kb on - strand at 663.427 kb on + strand at 663.428 kb on - strand at 663.569 kb on - strand, within ABIE41_RS03165 at 663.649 kb on + strand, within ABIE41_RS03165 at 663.649 kb on + strand, within ABIE41_RS03165 at 663.649 kb on + strand, within ABIE41_RS03165 at 663.649 kb on + strand, within ABIE41_RS03165 at 663.649 kb on + strand, within ABIE41_RS03165 at 663.650 kb on - strand, within ABIE41_RS03165 at 663.650 kb on - strand, within ABIE41_RS03165 at 663.650 kb on - strand, within ABIE41_RS03165 at 663.650 kb on - strand, within ABIE41_RS03165 at 663.650 kb on - strand, within ABIE41_RS03165 at 663.650 kb on - strand, within ABIE41_RS03165 at 663.650 kb on - strand, within ABIE41_RS03165 at 663.650 kb on - strand, within ABIE41_RS03165 at 663.650 kb on - strand, within ABIE41_RS03165 at 663.650 kb on - strand, within ABIE41_RS03165 at 663.650 kb on - strand, within ABIE41_RS03165 at 663.650 kb on - strand, within ABIE41_RS03165 at 663.857 kb on - strand, within ABIE41_RS03165 at 663.857 kb on - strand, within ABIE41_RS03165 at 663.857 kb on - strand, within ABIE41_RS03165 at 663.857 kb on - strand, within ABIE41_RS03165 at 663.857 kb on - strand, within ABIE41_RS03165 at 664.025 kb on - strand, within ABIE41_RS03165 at 664.025 kb on - strand, within ABIE41_RS03165 at 664.090 kb on + strand, within ABIE41_RS03165 at 664.091 kb on - strand, within ABIE41_RS03165 at 664.091 kb on - strand, within ABIE41_RS03165 at 664.091 kb on - strand, within ABIE41_RS03165 at 664.091 kb on - strand, within ABIE41_RS03165
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM remove 660,604 + ABIE41_RS03155 0.75 -0.8 660,604 + ABIE41_RS03155 0.75 -1.1 660,605 - ABIE41_RS03155 0.75 -0.1 660,605 - ABIE41_RS03155 0.75 +1.2 660,605 - ABIE41_RS03155 0.75 +0.7 660,682 + ABIE41_RS03155 0.80 +0.3 660,752 - ABIE41_RS03155 0.85 +0.3 660,758 + ABIE41_RS03155 0.85 -0.2 661,106 + +2.3 661,375 + ABIE41_RS03160 0.15 -0.5 661,375 + ABIE41_RS03160 0.15 +0.6 661,375 + ABIE41_RS03160 0.15 -0.2 661,375 + ABIE41_RS03160 0.15 -0.1 661,375 + ABIE41_RS03160 0.15 -0.1 661,376 - ABIE41_RS03160 0.15 +0.5 661,376 - ABIE41_RS03160 0.15 -0.3 661,376 - ABIE41_RS03160 0.15 -0.1 661,476 + ABIE41_RS03160 0.19 +1.4 661,476 + ABIE41_RS03160 0.19 +0.4 661,479 + ABIE41_RS03160 0.19 +0.8 661,479 + ABIE41_RS03160 0.19 +0.4 661,479 + ABIE41_RS03160 0.19 -0.5 661,479 + ABIE41_RS03160 0.19 -0.1 661,479 + ABIE41_RS03160 0.19 +2.1 661,479 + ABIE41_RS03160 0.19 +0.4 661,479 + ABIE41_RS03160 0.19 +2.9 661,479 + ABIE41_RS03160 0.19 +0.2 661,479 + ABIE41_RS03160 0.19 -1.7 661,479 + ABIE41_RS03160 0.19 +2.3 661,480 - ABIE41_RS03160 0.19 +0.4 661,480 - ABIE41_RS03160 0.19 -1.3 661,559 + ABIE41_RS03160 0.23 -0.6 661,560 + ABIE41_RS03160 0.23 -0.8 661,560 + ABIE41_RS03160 0.23 +0.4 661,560 + ABIE41_RS03160 0.23 -0.1 661,560 + ABIE41_RS03160 0.23 -1.1 661,560 + ABIE41_RS03160 0.23 +0.5 661,560 + ABIE41_RS03160 0.23 -0.3 661,560 + ABIE41_RS03160 0.23 +0.4 661,560 + ABIE41_RS03160 0.23 +0.1 661,560 + ABIE41_RS03160 0.23 -0.8 661,561 - ABIE41_RS03160 0.23 +0.5 661,561 - ABIE41_RS03160 0.23 +0.2 661,561 - ABIE41_RS03160 0.23 +1.1 661,561 - ABIE41_RS03160 0.23 +2.9 661,561 - ABIE41_RS03160 0.23 -0.5 661,561 - ABIE41_RS03160 0.23 +0.6 661,561 - ABIE41_RS03160 0.23 -0.3 661,561 - ABIE41_RS03160 0.23 +0.8 661,561 - ABIE41_RS03160 0.23 -0.1 661,561 - ABIE41_RS03160 0.23 +0.8 661,806 + ABIE41_RS03160 0.35 -0.3 662,067 + ABIE41_RS03160 0.47 -0.4 662,067 + ABIE41_RS03160 0.47 +1.4 662,068 - ABIE41_RS03160 0.47 -0.0 662,068 - ABIE41_RS03160 0.47 +1.0 662,068 - ABIE41_RS03160 0.47 -0.2 662,268 + ABIE41_RS03160 0.56 +0.2 662,269 - ABIE41_RS03160 0.56 +2.5 662,382 + ABIE41_RS03160 0.61 +1.0 662,382 + ABIE41_RS03160 0.61 +0.3 662,382 + ABIE41_RS03160 0.61 -0.5 662,383 - ABIE41_RS03160 0.61 -0.4 662,383 - ABIE41_RS03160 0.61 -0.1 662,383 - ABIE41_RS03160 0.61 +1.3 662,383 - ABIE41_RS03160 0.61 -0.1 662,509 - ABIE41_RS03160 0.67 -0.8 662,601 + ABIE41_RS03160 0.71 -0.7 662,601 + ABIE41_RS03160 0.71 +0.0 662,601 + ABIE41_RS03160 0.71 +0.5 662,602 - ABIE41_RS03160 0.71 -1.3 662,602 - ABIE41_RS03160 0.71 +0.7 662,602 - ABIE41_RS03160 0.71 -1.0 662,602 - ABIE41_RS03160 0.71 +0.1 662,631 + ABIE41_RS03160 0.73 -0.9 662,631 + ABIE41_RS03160 0.73 -1.7 662,631 + ABIE41_RS03160 0.73 +0.3 662,632 - ABIE41_RS03160 0.73 -0.8 662,632 - ABIE41_RS03160 0.73 -1.5 662,632 - ABIE41_RS03160 0.73 -1.0 662,652 + ABIE41_RS03160 0.74 -2.2 662,652 + ABIE41_RS03160 0.74 -0.8 662,652 + ABIE41_RS03160 0.74 -1.8 662,653 - ABIE41_RS03160 0.74 +0.7 662,653 - ABIE41_RS03160 0.74 -0.3 662,653 - ABIE41_RS03160 0.74 +2.3 662,653 - ABIE41_RS03160 0.74 +0.6 662,653 - ABIE41_RS03160 0.74 -0.5 662,653 - ABIE41_RS03160 0.74 +0.5 662,730 + ABIE41_RS03160 0.77 +1.5 662,730 + ABIE41_RS03160 0.77 +0.2 662,730 + ABIE41_RS03160 0.77 +0.2 662,730 + ABIE41_RS03160 0.77 -0.4 662,730 + ABIE41_RS03160 0.77 +1.1 662,730 + ABIE41_RS03160 0.77 +1.1 662,730 + ABIE41_RS03160 0.77 +0.2 662,730 + ABIE41_RS03160 0.77 +0.3 662,730 + ABIE41_RS03160 0.77 +1.1 662,731 - ABIE41_RS03160 0.77 +2.7 662,731 - ABIE41_RS03160 0.77 +0.7 662,731 - ABIE41_RS03160 0.77 +0.5 662,731 - ABIE41_RS03160 0.77 -0.1 662,731 - ABIE41_RS03160 0.77 -0.1 662,731 - ABIE41_RS03160 0.77 -0.4 662,731 - ABIE41_RS03160 0.77 +1.3 662,886 + ABIE41_RS03160 0.84 +0.2 662,886 + ABIE41_RS03160 0.84 +0.5 662,886 + ABIE41_RS03160 0.84 +1.1 662,886 + ABIE41_RS03160 0.84 +0.3 662,886 + ABIE41_RS03160 0.84 +1.0 662,886 + ABIE41_RS03160 0.84 -0.0 662,886 + ABIE41_RS03160 0.84 -0.9 662,886 + ABIE41_RS03160 0.84 +0.4 662,886 + ABIE41_RS03160 0.84 +1.4 662,887 - ABIE41_RS03160 0.84 +0.6 662,887 - ABIE41_RS03160 0.84 +1.5 662,887 - ABIE41_RS03160 0.84 +1.1 662,887 - ABIE41_RS03160 0.84 +1.7 662,887 - ABIE41_RS03160 0.84 +0.8 662,928 + ABIE41_RS03160 0.86 -0.0 662,928 + ABIE41_RS03160 0.86 -0.7 662,929 - ABIE41_RS03160 0.86 -0.9 662,929 - ABIE41_RS03160 0.86 -0.8 662,929 - ABIE41_RS03160 0.86 -0.8 662,929 - ABIE41_RS03160 0.86 +2.1 662,967 + ABIE41_RS03160 0.88 +0.2 663,084 + +0.1 663,084 + +0.3 663,084 + +0.2 663,085 - -0.6 663,087 + -0.3 663,087 + -0.2 663,087 + -0.0 663,088 - -0.1 663,088 - +0.7 663,088 - +0.8 663,402 + -2.9 663,403 + -0.1 663,403 + -0.4 663,403 + -0.5 663,403 + -0.7 663,403 + +0.7 663,403 + +1.1 663,403 + -0.7 663,403 + +1.2 663,403 + -0.2 663,404 - -0.6 663,404 - -0.4 663,404 - -0.6 663,404 - -0.3 663,404 - -0.3 663,427 + -0.2 663,428 - -1.8 663,569 - ABIE41_RS03165 0.17 -1.0 663,649 + ABIE41_RS03165 0.25 -1.4 663,649 + ABIE41_RS03165 0.25 -0.7 663,649 + ABIE41_RS03165 0.25 +2.3 663,649 + ABIE41_RS03165 0.25 -0.2 663,649 + ABIE41_RS03165 0.25 +0.7 663,650 - ABIE41_RS03165 0.25 +1.3 663,650 - ABIE41_RS03165 0.25 -0.5 663,650 - ABIE41_RS03165 0.25 -0.3 663,650 - ABIE41_RS03165 0.25 -0.7 663,650 - ABIE41_RS03165 0.25 -0.4 663,650 - ABIE41_RS03165 0.25 -0.7 663,650 - ABIE41_RS03165 0.25 +0.5 663,650 - ABIE41_RS03165 0.25 +0.2 663,650 - ABIE41_RS03165 0.25 +0.0 663,650 - ABIE41_RS03165 0.25 +0.4 663,650 - ABIE41_RS03165 0.25 +0.2 663,650 - ABIE41_RS03165 0.25 -0.4 663,857 - ABIE41_RS03165 0.46 -0.2 663,857 - ABIE41_RS03165 0.46 -0.7 663,857 - ABIE41_RS03165 0.46 +0.6 663,857 - ABIE41_RS03165 0.46 -1.1 663,857 - ABIE41_RS03165 0.46 +0.1 664,025 - ABIE41_RS03165 0.64 +1.4 664,025 - ABIE41_RS03165 0.64 +0.7 664,090 + ABIE41_RS03165 0.70 +1.1 664,091 - ABIE41_RS03165 0.70 -0.7 664,091 - ABIE41_RS03165 0.70 +0.0 664,091 - ABIE41_RS03165 0.70 +0.5 664,091 - ABIE41_RS03165 0.70 -0.6
Or see this region's nucleotide sequence