Experiment: R2A with 3-octanone 5.31033333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20770 and ABIE41_RS20775 are separated by 13 nucleotides ABIE41_RS20775 and ABIE41_RS20780 are separated by 239 nucleotides
ABIE41_RS20770: ABIE41_RS20770 - ribulose-bisphosphate carboxylase large subunit family protein, at 4,271,427 to 4,272,686
_RS20770
ABIE41_RS20775: ABIE41_RS20775 - SDR family oxidoreductase, at 4,272,700 to 4,273,494
_RS20775
ABIE41_RS20780: ABIE41_RS20780 - LysR substrate-binding domain-containing protein, at 4,273,734 to 4,274,606
_RS20780
Position (kb)
4272
4273
4274 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4271.815 kb on + strand, within ABIE41_RS20770 at 4271.815 kb on + strand, within ABIE41_RS20770 at 4271.815 kb on + strand, within ABIE41_RS20770 at 4271.815 kb on + strand, within ABIE41_RS20770 at 4271.816 kb on - strand, within ABIE41_RS20770 at 4271.816 kb on - strand, within ABIE41_RS20770 at 4271.816 kb on - strand, within ABIE41_RS20770 at 4271.816 kb on - strand, within ABIE41_RS20770 at 4271.848 kb on + strand, within ABIE41_RS20770 at 4271.849 kb on - strand, within ABIE41_RS20770 at 4272.292 kb on + strand, within ABIE41_RS20770 at 4272.292 kb on + strand, within ABIE41_RS20770 at 4272.658 kb on + strand at 4272.658 kb on + strand at 4272.755 kb on + strand at 4272.756 kb on - strand at 4272.756 kb on - strand at 4272.756 kb on - strand at 4272.756 kb on - strand at 4272.872 kb on + strand, within ABIE41_RS20775 at 4272.872 kb on + strand, within ABIE41_RS20775 at 4272.873 kb on - strand, within ABIE41_RS20775 at 4272.873 kb on - strand, within ABIE41_RS20775 at 4272.873 kb on - strand, within ABIE41_RS20775 at 4272.873 kb on - strand, within ABIE41_RS20775 at 4272.957 kb on - strand, within ABIE41_RS20775 at 4273.007 kb on + strand, within ABIE41_RS20775 at 4273.010 kb on + strand, within ABIE41_RS20775 at 4273.010 kb on + strand, within ABIE41_RS20775 at 4273.010 kb on + strand, within ABIE41_RS20775 at 4273.010 kb on + strand, within ABIE41_RS20775 at 4273.011 kb on - strand, within ABIE41_RS20775 at 4273.019 kb on + strand, within ABIE41_RS20775 at 4273.035 kb on - strand, within ABIE41_RS20775 at 4273.035 kb on - strand, within ABIE41_RS20775 at 4273.093 kb on - strand, within ABIE41_RS20775 at 4273.199 kb on + strand, within ABIE41_RS20775 at 4273.199 kb on + strand, within ABIE41_RS20775 at 4273.654 kb on + strand at 4273.654 kb on + strand at 4273.654 kb on + strand at 4273.655 kb on - strand at 4273.655 kb on - strand at 4273.704 kb on - strand at 4273.908 kb on + strand, within ABIE41_RS20780 at 4273.924 kb on + strand, within ABIE41_RS20780 at 4273.924 kb on + strand, within ABIE41_RS20780 at 4273.925 kb on - strand, within ABIE41_RS20780 at 4274.112 kb on + strand, within ABIE41_RS20780 at 4274.112 kb on + strand, within ABIE41_RS20780 at 4274.113 kb on - strand, within ABIE41_RS20780 at 4274.113 kb on - strand, within ABIE41_RS20780 at 4274.113 kb on - strand, within ABIE41_RS20780 at 4274.242 kb on - strand, within ABIE41_RS20780 at 4274.394 kb on + strand, within ABIE41_RS20780 at 4274.394 kb on + strand, within ABIE41_RS20780
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM remove 4,271,815 + ABIE41_RS20770 0.31 -1.2 4,271,815 + ABIE41_RS20770 0.31 +0.0 4,271,815 + ABIE41_RS20770 0.31 -0.3 4,271,815 + ABIE41_RS20770 0.31 -0.8 4,271,816 - ABIE41_RS20770 0.31 +1.4 4,271,816 - ABIE41_RS20770 0.31 -0.5 4,271,816 - ABIE41_RS20770 0.31 -1.0 4,271,816 - ABIE41_RS20770 0.31 -0.3 4,271,848 + ABIE41_RS20770 0.33 -0.2 4,271,849 - ABIE41_RS20770 0.33 -0.5 4,272,292 + ABIE41_RS20770 0.69 -0.1 4,272,292 + ABIE41_RS20770 0.69 +0.1 4,272,658 + -2.6 4,272,658 + -1.5 4,272,755 + -0.4 4,272,756 - -1.9 4,272,756 - -0.5 4,272,756 - -0.6 4,272,756 - -0.0 4,272,872 + ABIE41_RS20775 0.22 -0.8 4,272,872 + ABIE41_RS20775 0.22 +1.8 4,272,873 - ABIE41_RS20775 0.22 -0.6 4,272,873 - ABIE41_RS20775 0.22 -0.6 4,272,873 - ABIE41_RS20775 0.22 +0.4 4,272,873 - ABIE41_RS20775 0.22 +0.7 4,272,957 - ABIE41_RS20775 0.32 -0.2 4,273,007 + ABIE41_RS20775 0.39 -0.7 4,273,010 + ABIE41_RS20775 0.39 +0.2 4,273,010 + ABIE41_RS20775 0.39 -0.2 4,273,010 + ABIE41_RS20775 0.39 +0.1 4,273,010 + ABIE41_RS20775 0.39 +0.5 4,273,011 - ABIE41_RS20775 0.39 +0.0 4,273,019 + ABIE41_RS20775 0.40 +0.4 4,273,035 - ABIE41_RS20775 0.42 -0.4 4,273,035 - ABIE41_RS20775 0.42 +0.1 4,273,093 - ABIE41_RS20775 0.49 -0.8 4,273,199 + ABIE41_RS20775 0.63 -1.1 4,273,199 + ABIE41_RS20775 0.63 -1.1 4,273,654 + -0.2 4,273,654 + -2.5 4,273,654 + +0.8 4,273,655 - +0.4 4,273,655 - -0.8 4,273,704 - -1.2 4,273,908 + ABIE41_RS20780 0.20 -1.0 4,273,924 + ABIE41_RS20780 0.22 +0.2 4,273,924 + ABIE41_RS20780 0.22 -0.2 4,273,925 - ABIE41_RS20780 0.22 +0.5 4,274,112 + ABIE41_RS20780 0.43 -0.9 4,274,112 + ABIE41_RS20780 0.43 +1.5 4,274,113 - ABIE41_RS20780 0.43 -3.5 4,274,113 - ABIE41_RS20780 0.43 -0.7 4,274,113 - ABIE41_RS20780 0.43 -0.2 4,274,242 - ABIE41_RS20780 0.58 +0.1 4,274,394 + ABIE41_RS20780 0.76 -0.1 4,274,394 + ABIE41_RS20780 0.76 +0.3
Or see this region's nucleotide sequence