Strain Fitness in Bosea sp. OAE506 around ABIE41_RS20775

Experiment: R2A with 3-octanone 5.31033333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS20770 and ABIE41_RS20775 are separated by 13 nucleotidesABIE41_RS20775 and ABIE41_RS20780 are separated by 239 nucleotides ABIE41_RS20770: ABIE41_RS20770 - ribulose-bisphosphate carboxylase large subunit family protein, at 4,271,427 to 4,272,686 _RS20770 ABIE41_RS20775: ABIE41_RS20775 - SDR family oxidoreductase, at 4,272,700 to 4,273,494 _RS20775 ABIE41_RS20780: ABIE41_RS20780 - LysR substrate-binding domain-containing protein, at 4,273,734 to 4,274,606 _RS20780 Position (kb) 4272 4273 4274Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4271.815 kb on + strand, within ABIE41_RS20770at 4271.815 kb on + strand, within ABIE41_RS20770at 4271.815 kb on + strand, within ABIE41_RS20770at 4271.815 kb on + strand, within ABIE41_RS20770at 4271.816 kb on - strand, within ABIE41_RS20770at 4271.816 kb on - strand, within ABIE41_RS20770at 4271.816 kb on - strand, within ABIE41_RS20770at 4271.816 kb on - strand, within ABIE41_RS20770at 4271.848 kb on + strand, within ABIE41_RS20770at 4271.849 kb on - strand, within ABIE41_RS20770at 4272.292 kb on + strand, within ABIE41_RS20770at 4272.292 kb on + strand, within ABIE41_RS20770at 4272.658 kb on + strandat 4272.658 kb on + strandat 4272.755 kb on + strandat 4272.756 kb on - strandat 4272.756 kb on - strandat 4272.756 kb on - strandat 4272.756 kb on - strandat 4272.872 kb on + strand, within ABIE41_RS20775at 4272.872 kb on + strand, within ABIE41_RS20775at 4272.873 kb on - strand, within ABIE41_RS20775at 4272.873 kb on - strand, within ABIE41_RS20775at 4272.873 kb on - strand, within ABIE41_RS20775at 4272.873 kb on - strand, within ABIE41_RS20775at 4272.957 kb on - strand, within ABIE41_RS20775at 4273.007 kb on + strand, within ABIE41_RS20775at 4273.010 kb on + strand, within ABIE41_RS20775at 4273.010 kb on + strand, within ABIE41_RS20775at 4273.010 kb on + strand, within ABIE41_RS20775at 4273.010 kb on + strand, within ABIE41_RS20775at 4273.011 kb on - strand, within ABIE41_RS20775at 4273.019 kb on + strand, within ABIE41_RS20775at 4273.035 kb on - strand, within ABIE41_RS20775at 4273.035 kb on - strand, within ABIE41_RS20775at 4273.093 kb on - strand, within ABIE41_RS20775at 4273.199 kb on + strand, within ABIE41_RS20775at 4273.199 kb on + strand, within ABIE41_RS20775at 4273.654 kb on + strandat 4273.654 kb on + strandat 4273.654 kb on + strandat 4273.655 kb on - strandat 4273.655 kb on - strandat 4273.704 kb on - strandat 4273.908 kb on + strand, within ABIE41_RS20780at 4273.924 kb on + strand, within ABIE41_RS20780at 4273.924 kb on + strand, within ABIE41_RS20780at 4273.925 kb on - strand, within ABIE41_RS20780at 4274.112 kb on + strand, within ABIE41_RS20780at 4274.112 kb on + strand, within ABIE41_RS20780at 4274.113 kb on - strand, within ABIE41_RS20780at 4274.113 kb on - strand, within ABIE41_RS20780at 4274.113 kb on - strand, within ABIE41_RS20780at 4274.242 kb on - strand, within ABIE41_RS20780at 4274.394 kb on + strand, within ABIE41_RS20780at 4274.394 kb on + strand, within ABIE41_RS20780

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM
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4,271,815 + ABIE41_RS20770 0.31 -1.2
4,271,815 + ABIE41_RS20770 0.31 +0.0
4,271,815 + ABIE41_RS20770 0.31 -0.3
4,271,815 + ABIE41_RS20770 0.31 -0.8
4,271,816 - ABIE41_RS20770 0.31 +1.4
4,271,816 - ABIE41_RS20770 0.31 -0.5
4,271,816 - ABIE41_RS20770 0.31 -1.0
4,271,816 - ABIE41_RS20770 0.31 -0.3
4,271,848 + ABIE41_RS20770 0.33 -0.2
4,271,849 - ABIE41_RS20770 0.33 -0.5
4,272,292 + ABIE41_RS20770 0.69 -0.1
4,272,292 + ABIE41_RS20770 0.69 +0.1
4,272,658 + -2.6
4,272,658 + -1.5
4,272,755 + -0.4
4,272,756 - -1.9
4,272,756 - -0.5
4,272,756 - -0.6
4,272,756 - -0.0
4,272,872 + ABIE41_RS20775 0.22 -0.8
4,272,872 + ABIE41_RS20775 0.22 +1.8
4,272,873 - ABIE41_RS20775 0.22 -0.6
4,272,873 - ABIE41_RS20775 0.22 -0.6
4,272,873 - ABIE41_RS20775 0.22 +0.4
4,272,873 - ABIE41_RS20775 0.22 +0.7
4,272,957 - ABIE41_RS20775 0.32 -0.2
4,273,007 + ABIE41_RS20775 0.39 -0.7
4,273,010 + ABIE41_RS20775 0.39 +0.2
4,273,010 + ABIE41_RS20775 0.39 -0.2
4,273,010 + ABIE41_RS20775 0.39 +0.1
4,273,010 + ABIE41_RS20775 0.39 +0.5
4,273,011 - ABIE41_RS20775 0.39 +0.0
4,273,019 + ABIE41_RS20775 0.40 +0.4
4,273,035 - ABIE41_RS20775 0.42 -0.4
4,273,035 - ABIE41_RS20775 0.42 +0.1
4,273,093 - ABIE41_RS20775 0.49 -0.8
4,273,199 + ABIE41_RS20775 0.63 -1.1
4,273,199 + ABIE41_RS20775 0.63 -1.1
4,273,654 + -0.2
4,273,654 + -2.5
4,273,654 + +0.8
4,273,655 - +0.4
4,273,655 - -0.8
4,273,704 - -1.2
4,273,908 + ABIE41_RS20780 0.20 -1.0
4,273,924 + ABIE41_RS20780 0.22 +0.2
4,273,924 + ABIE41_RS20780 0.22 -0.2
4,273,925 - ABIE41_RS20780 0.22 +0.5
4,274,112 + ABIE41_RS20780 0.43 -0.9
4,274,112 + ABIE41_RS20780 0.43 +1.5
4,274,113 - ABIE41_RS20780 0.43 -3.5
4,274,113 - ABIE41_RS20780 0.43 -0.7
4,274,113 - ABIE41_RS20780 0.43 -0.2
4,274,242 - ABIE41_RS20780 0.58 +0.1
4,274,394 + ABIE41_RS20780 0.76 -0.1
4,274,394 + ABIE41_RS20780 0.76 +0.3

Or see this region's nucleotide sequence