Experiment: R2A with 3-octanone 5.31033333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS18760 and ABIE41_RS18765 are separated by 13 nucleotides ABIE41_RS18765 and ABIE41_RS18770 are separated by 4 nucleotides ABIE41_RS18770 and ABIE41_RS18775 are separated by 1 nucleotides
ABIE41_RS18760: ABIE41_RS18760 - flotillin family protein, at 3,863,624 to 3,866,530
_RS18760
ABIE41_RS18765: ABIE41_RS18765 - SRPBCC family protein, at 3,866,544 to 3,866,981
_RS18765
ABIE41_RS18770: ABIE41_RS18770 - SRPBCC family protein, at 3,866,986 to 3,867,438
_RS18770
ABIE41_RS18775: ABIE41_RS18775 - FAD binding domain-containing protein, at 3,867,440 to 3,868,261
_RS18775
Position (kb)
3866
3867 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3865.859 kb on + strand, within ABIE41_RS18760 at 3865.860 kb on - strand, within ABIE41_RS18760 at 3865.860 kb on - strand, within ABIE41_RS18760 at 3865.860 kb on - strand, within ABIE41_RS18760 at 3865.860 kb on - strand, within ABIE41_RS18760 at 3866.087 kb on + strand, within ABIE41_RS18760 at 3866.087 kb on + strand, within ABIE41_RS18760 at 3866.087 kb on + strand, within ABIE41_RS18760 at 3866.088 kb on - strand, within ABIE41_RS18760 at 3866.088 kb on - strand, within ABIE41_RS18760 at 3866.308 kb on - strand at 3866.381 kb on - strand at 3866.381 kb on - strand at 3866.381 kb on - strand at 3866.381 kb on - strand at 3866.556 kb on + strand at 3866.556 kb on + strand at 3866.680 kb on - strand, within ABIE41_RS18765 at 3866.757 kb on + strand, within ABIE41_RS18765 at 3866.776 kb on - strand, within ABIE41_RS18765 at 3866.776 kb on - strand, within ABIE41_RS18765 at 3866.776 kb on - strand, within ABIE41_RS18765 at 3866.811 kb on + strand, within ABIE41_RS18765 at 3866.811 kb on + strand, within ABIE41_RS18765 at 3866.812 kb on - strand, within ABIE41_RS18765 at 3866.812 kb on - strand, within ABIE41_RS18765 at 3866.812 kb on - strand, within ABIE41_RS18765 at 3866.812 kb on - strand, within ABIE41_RS18765 at 3866.812 kb on - strand, within ABIE41_RS18765 at 3866.812 kb on - strand, within ABIE41_RS18765 at 3866.812 kb on - strand, within ABIE41_RS18765 at 3866.812 kb on - strand, within ABIE41_RS18765 at 3867.217 kb on + strand, within ABIE41_RS18770 at 3867.218 kb on - strand, within ABIE41_RS18770 at 3867.218 kb on - strand, within ABIE41_RS18770 at 3867.218 kb on - strand, within ABIE41_RS18770 at 3867.324 kb on + strand, within ABIE41_RS18770 at 3867.325 kb on - strand, within ABIE41_RS18770 at 3867.379 kb on + strand, within ABIE41_RS18770 at 3867.379 kb on + strand, within ABIE41_RS18770 at 3867.773 kb on + strand, within ABIE41_RS18775
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM remove 3,865,859 + ABIE41_RS18760 0.77 +0.2 3,865,860 - ABIE41_RS18760 0.77 +0.8 3,865,860 - ABIE41_RS18760 0.77 +1.7 3,865,860 - ABIE41_RS18760 0.77 +0.9 3,865,860 - ABIE41_RS18760 0.77 +0.5 3,866,087 + ABIE41_RS18760 0.85 +1.4 3,866,087 + ABIE41_RS18760 0.85 -3.7 3,866,087 + ABIE41_RS18760 0.85 +0.0 3,866,088 - ABIE41_RS18760 0.85 +0.5 3,866,088 - ABIE41_RS18760 0.85 -0.3 3,866,308 - -1.1 3,866,381 - +0.3 3,866,381 - -1.3 3,866,381 - +0.3 3,866,381 - -1.0 3,866,556 + +0.2 3,866,556 + -0.0 3,866,680 - ABIE41_RS18765 0.31 -0.2 3,866,757 + ABIE41_RS18765 0.49 -0.6 3,866,776 - ABIE41_RS18765 0.53 -0.5 3,866,776 - ABIE41_RS18765 0.53 -1.1 3,866,776 - ABIE41_RS18765 0.53 -1.1 3,866,811 + ABIE41_RS18765 0.61 -0.5 3,866,811 + ABIE41_RS18765 0.61 +0.2 3,866,812 - ABIE41_RS18765 0.61 -0.1 3,866,812 - ABIE41_RS18765 0.61 +1.5 3,866,812 - ABIE41_RS18765 0.61 +0.3 3,866,812 - ABIE41_RS18765 0.61 +1.2 3,866,812 - ABIE41_RS18765 0.61 -0.1 3,866,812 - ABIE41_RS18765 0.61 -0.4 3,866,812 - ABIE41_RS18765 0.61 -1.0 3,866,812 - ABIE41_RS18765 0.61 -1.3 3,867,217 + ABIE41_RS18770 0.51 -1.0 3,867,218 - ABIE41_RS18770 0.51 -0.4 3,867,218 - ABIE41_RS18770 0.51 +0.2 3,867,218 - ABIE41_RS18770 0.51 -0.3 3,867,324 + ABIE41_RS18770 0.75 -0.4 3,867,325 - ABIE41_RS18770 0.75 -1.1 3,867,379 + ABIE41_RS18770 0.87 -2.4 3,867,379 + ABIE41_RS18770 0.87 -0.5 3,867,773 + ABIE41_RS18775 0.41 +1.1
Or see this region's nucleotide sequence