Strain Fitness in Bosea sp. OAE506 around ABIE41_RS05395

Experiment: R2A with 3-octanone 5.31033333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS05390 and ABIE41_RS05395 are separated by 162 nucleotidesABIE41_RS05395 and ABIE41_RS05400 are separated by 169 nucleotides ABIE41_RS05390: ABIE41_RS05390 - flagellar basal-body MS-ring/collar protein FliF, at 1,115,961 to 1,117,586 _RS05390 ABIE41_RS05395: ABIE41_RS05395 - flagellin, at 1,117,749 to 1,119,002 _RS05395 ABIE41_RS05400: ABIE41_RS05400 - EscU/YscU/HrcU family type III secretion system export apparatus switch protein, at 1,119,172 to 1,120,236 _RS05400 Position (kb) 1117 1118 1119 1120Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1116.788 kb on + strand, within ABIE41_RS05390at 1116.788 kb on + strand, within ABIE41_RS05390at 1116.788 kb on + strand, within ABIE41_RS05390at 1116.789 kb on - strand, within ABIE41_RS05390at 1116.789 kb on - strand, within ABIE41_RS05390at 1116.833 kb on - strand, within ABIE41_RS05390at 1117.258 kb on + strand, within ABIE41_RS05390at 1117.259 kb on - strand, within ABIE41_RS05390at 1117.338 kb on + strand, within ABIE41_RS05390at 1117.338 kb on + strand, within ABIE41_RS05390at 1117.432 kb on + strandat 1117.465 kb on + strandat 1117.570 kb on + strandat 1117.570 kb on + strandat 1117.570 kb on + strandat 1117.570 kb on + strandat 1117.571 kb on - strandat 1117.571 kb on - strandat 1118.017 kb on + strand, within ABIE41_RS05395at 1118.017 kb on + strand, within ABIE41_RS05395at 1118.017 kb on + strand, within ABIE41_RS05395at 1118.017 kb on + strand, within ABIE41_RS05395at 1118.017 kb on + strand, within ABIE41_RS05395at 1118.017 kb on + strand, within ABIE41_RS05395at 1118.017 kb on + strand, within ABIE41_RS05395at 1118.017 kb on + strand, within ABIE41_RS05395at 1118.018 kb on - strand, within ABIE41_RS05395at 1118.018 kb on - strand, within ABIE41_RS05395at 1118.018 kb on - strand, within ABIE41_RS05395at 1118.018 kb on - strand, within ABIE41_RS05395at 1118.018 kb on - strand, within ABIE41_RS05395at 1118.018 kb on - strand, within ABIE41_RS05395at 1118.018 kb on - strand, within ABIE41_RS05395at 1118.018 kb on - strand, within ABIE41_RS05395at 1118.110 kb on + strand, within ABIE41_RS05395at 1118.111 kb on - strand, within ABIE41_RS05395at 1118.111 kb on - strand, within ABIE41_RS05395at 1118.111 kb on - strand, within ABIE41_RS05395at 1118.111 kb on - strand, within ABIE41_RS05395at 1118.118 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.120 kb on - strand, within ABIE41_RS05395at 1118.120 kb on - strand, within ABIE41_RS05395at 1118.120 kb on - strand, within ABIE41_RS05395at 1118.120 kb on - strand, within ABIE41_RS05395at 1118.120 kb on - strand, within ABIE41_RS05395at 1118.120 kb on - strand, within ABIE41_RS05395at 1118.120 kb on - strand, within ABIE41_RS05395at 1118.120 kb on - strand, within ABIE41_RS05395at 1118.120 kb on - strand, within ABIE41_RS05395at 1118.480 kb on - strand, within ABIE41_RS05395at 1118.575 kb on + strand, within ABIE41_RS05395at 1118.575 kb on + strand, within ABIE41_RS05395at 1118.575 kb on + strand, within ABIE41_RS05395at 1118.575 kb on + strand, within ABIE41_RS05395at 1118.575 kb on + strand, within ABIE41_RS05395at 1118.576 kb on - strand, within ABIE41_RS05395at 1118.576 kb on - strand, within ABIE41_RS05395at 1118.768 kb on + strand, within ABIE41_RS05395at 1118.769 kb on - strand, within ABIE41_RS05395at 1118.770 kb on + strand, within ABIE41_RS05395at 1118.770 kb on + strand, within ABIE41_RS05395at 1118.770 kb on + strand, within ABIE41_RS05395at 1118.770 kb on + strand, within ABIE41_RS05395at 1118.770 kb on + strand, within ABIE41_RS05395at 1118.770 kb on + strand, within ABIE41_RS05395at 1118.770 kb on + strand, within ABIE41_RS05395at 1118.770 kb on + strand, within ABIE41_RS05395at 1118.770 kb on + strand, within ABIE41_RS05395at 1118.770 kb on + strand, within ABIE41_RS05395at 1118.771 kb on - strand, within ABIE41_RS05395at 1118.771 kb on - strand, within ABIE41_RS05395at 1118.771 kb on - strand, within ABIE41_RS05395at 1118.771 kb on - strand, within ABIE41_RS05395at 1118.771 kb on - strand, within ABIE41_RS05395at 1118.771 kb on - strand, within ABIE41_RS05395at 1118.771 kb on - strand, within ABIE41_RS05395at 1118.771 kb on - strand, within ABIE41_RS05395at 1118.771 kb on - strand, within ABIE41_RS05395at 1118.771 kb on - strand, within ABIE41_RS05395at 1118.771 kb on - strand, within ABIE41_RS05395at 1118.771 kb on - strand, within ABIE41_RS05395at 1118.867 kb on - strand, within ABIE41_RS05395at 1119.129 kb on + strandat 1119.129 kb on + strandat 1119.130 kb on - strandat 1119.191 kb on + strandat 1119.191 kb on + strandat 1119.224 kb on + strandat 1119.224 kb on + strandat 1119.224 kb on + strandat 1119.225 kb on - strandat 1119.398 kb on + strand, within ABIE41_RS05400at 1119.398 kb on + strand, within ABIE41_RS05400at 1119.398 kb on + strand, within ABIE41_RS05400at 1119.399 kb on - strand, within ABIE41_RS05400at 1119.399 kb on - strand, within ABIE41_RS05400at 1119.399 kb on - strand, within ABIE41_RS05400at 1119.399 kb on - strand, within ABIE41_RS05400at 1119.399 kb on - strand, within ABIE41_RS05400at 1119.399 kb on - strand, within ABIE41_RS05400at 1119.399 kb on - strand, within ABIE41_RS05400at 1119.399 kb on - strand, within ABIE41_RS05400at 1119.416 kb on + strand, within ABIE41_RS05400at 1119.416 kb on + strand, within ABIE41_RS05400at 1119.416 kb on + strand, within ABIE41_RS05400at 1119.417 kb on - strand, within ABIE41_RS05400at 1119.983 kb on + strand, within ABIE41_RS05400at 1119.983 kb on + strand, within ABIE41_RS05400at 1119.983 kb on + strand, within ABIE41_RS05400

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM
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1,116,788 + ABIE41_RS05390 0.51 -0.9
1,116,788 + ABIE41_RS05390 0.51 +0.5
1,116,788 + ABIE41_RS05390 0.51 -0.1
1,116,789 - ABIE41_RS05390 0.51 +0.3
1,116,789 - ABIE41_RS05390 0.51 +3.5
1,116,833 - ABIE41_RS05390 0.54 -0.7
1,117,258 + ABIE41_RS05390 0.80 -0.4
1,117,259 - ABIE41_RS05390 0.80 +0.7
1,117,338 + ABIE41_RS05390 0.85 -1.1
1,117,338 + ABIE41_RS05390 0.85 -1.0
1,117,432 + +1.1
1,117,465 + +0.1
1,117,570 + -1.1
1,117,570 + +0.3
1,117,570 + -1.3
1,117,570 + +1.3
1,117,571 - -1.6
1,117,571 - +1.5
1,118,017 + ABIE41_RS05395 0.21 -0.2
1,118,017 + ABIE41_RS05395 0.21 +0.0
1,118,017 + ABIE41_RS05395 0.21 -0.6
1,118,017 + ABIE41_RS05395 0.21 +0.5
1,118,017 + ABIE41_RS05395 0.21 -0.6
1,118,017 + ABIE41_RS05395 0.21 +0.3
1,118,017 + ABIE41_RS05395 0.21 +1.4
1,118,017 + ABIE41_RS05395 0.21 +1.5
1,118,018 - ABIE41_RS05395 0.21 +3.6
1,118,018 - ABIE41_RS05395 0.21 -0.5
1,118,018 - ABIE41_RS05395 0.21 +0.4
1,118,018 - ABIE41_RS05395 0.21 +0.9
1,118,018 - ABIE41_RS05395 0.21 -1.0
1,118,018 - ABIE41_RS05395 0.21 +0.6
1,118,018 - ABIE41_RS05395 0.21 -0.3
1,118,018 - ABIE41_RS05395 0.21 +0.4
1,118,110 + ABIE41_RS05395 0.29 -1.9
1,118,111 - ABIE41_RS05395 0.29 -0.1
1,118,111 - ABIE41_RS05395 0.29 +0.3
1,118,111 - ABIE41_RS05395 0.29 +1.1
1,118,111 - ABIE41_RS05395 0.29 -0.7
1,118,118 + ABIE41_RS05395 0.29 +0.7
1,118,119 + ABIE41_RS05395 0.30 -0.4
1,118,119 + ABIE41_RS05395 0.30 -1.7
1,118,119 + ABIE41_RS05395 0.30 +0.3
1,118,119 + ABIE41_RS05395 0.30 +0.8
1,118,119 + ABIE41_RS05395 0.30 -0.7
1,118,119 + ABIE41_RS05395 0.30 -0.7
1,118,119 + ABIE41_RS05395 0.30 -0.7
1,118,119 + ABIE41_RS05395 0.30 +0.7
1,118,119 + ABIE41_RS05395 0.30 +0.2
1,118,119 + ABIE41_RS05395 0.30 +0.1
1,118,119 + ABIE41_RS05395 0.30 +1.3
1,118,119 + ABIE41_RS05395 0.30 -0.3
1,118,119 + ABIE41_RS05395 0.30 -0.7
1,118,119 + ABIE41_RS05395 0.30 +0.4
1,118,119 + ABIE41_RS05395 0.30 +0.3
1,118,120 - ABIE41_RS05395 0.30 -1.6
1,118,120 - ABIE41_RS05395 0.30 +0.1
1,118,120 - ABIE41_RS05395 0.30 -0.3
1,118,120 - ABIE41_RS05395 0.30 +0.3
1,118,120 - ABIE41_RS05395 0.30 +0.8
1,118,120 - ABIE41_RS05395 0.30 -1.3
1,118,120 - ABIE41_RS05395 0.30 +0.7
1,118,120 - ABIE41_RS05395 0.30 -0.5
1,118,120 - ABIE41_RS05395 0.30 -0.7
1,118,480 - ABIE41_RS05395 0.58 +0.7
1,118,575 + ABIE41_RS05395 0.66 +0.4
1,118,575 + ABIE41_RS05395 0.66 -1.6
1,118,575 + ABIE41_RS05395 0.66 -0.5
1,118,575 + ABIE41_RS05395 0.66 +0.1
1,118,575 + ABIE41_RS05395 0.66 -0.7
1,118,576 - ABIE41_RS05395 0.66 -0.7
1,118,576 - ABIE41_RS05395 0.66 -0.1
1,118,768 + ABIE41_RS05395 0.81 +0.2
1,118,769 - ABIE41_RS05395 0.81 +0.0
1,118,770 + ABIE41_RS05395 0.81 -0.1
1,118,770 + ABIE41_RS05395 0.81 -1.1
1,118,770 + ABIE41_RS05395 0.81 +0.4
1,118,770 + ABIE41_RS05395 0.81 +2.1
1,118,770 + ABIE41_RS05395 0.81 +0.1
1,118,770 + ABIE41_RS05395 0.81 +2.6
1,118,770 + ABIE41_RS05395 0.81 +0.1
1,118,770 + ABIE41_RS05395 0.81 +0.1
1,118,770 + ABIE41_RS05395 0.81 -0.5
1,118,770 + ABIE41_RS05395 0.81 +0.6
1,118,771 - ABIE41_RS05395 0.81 -1.2
1,118,771 - ABIE41_RS05395 0.81 -0.1
1,118,771 - ABIE41_RS05395 0.81 -0.8
1,118,771 - ABIE41_RS05395 0.81 +0.6
1,118,771 - ABIE41_RS05395 0.81 -0.1
1,118,771 - ABIE41_RS05395 0.81 +0.3
1,118,771 - ABIE41_RS05395 0.81 +0.0
1,118,771 - ABIE41_RS05395 0.81 +2.6
1,118,771 - ABIE41_RS05395 0.81 +0.6
1,118,771 - ABIE41_RS05395 0.81 -1.8
1,118,771 - ABIE41_RS05395 0.81 +0.5
1,118,771 - ABIE41_RS05395 0.81 +0.5
1,118,867 - ABIE41_RS05395 0.89 +0.3
1,119,129 + +0.6
1,119,129 + -0.2
1,119,130 - -0.1
1,119,191 + +0.4
1,119,191 + -1.4
1,119,224 + -1.4
1,119,224 + +0.8
1,119,224 + -0.0
1,119,225 - +2.3
1,119,398 + ABIE41_RS05400 0.21 -0.9
1,119,398 + ABIE41_RS05400 0.21 -0.5
1,119,398 + ABIE41_RS05400 0.21 +0.7
1,119,399 - ABIE41_RS05400 0.21 -0.8
1,119,399 - ABIE41_RS05400 0.21 +0.6
1,119,399 - ABIE41_RS05400 0.21 -1.2
1,119,399 - ABIE41_RS05400 0.21 -0.4
1,119,399 - ABIE41_RS05400 0.21 -0.0
1,119,399 - ABIE41_RS05400 0.21 +1.0
1,119,399 - ABIE41_RS05400 0.21 -0.0
1,119,399 - ABIE41_RS05400 0.21 -2.2
1,119,416 + ABIE41_RS05400 0.23 -1.4
1,119,416 + ABIE41_RS05400 0.23 +0.3
1,119,416 + ABIE41_RS05400 0.23 -2.6
1,119,417 - ABIE41_RS05400 0.23 +2.2
1,119,983 + ABIE41_RS05400 0.76 +0.4
1,119,983 + ABIE41_RS05400 0.76 +0.3
1,119,983 + ABIE41_RS05400 0.76 +0.6

Or see this region's nucleotide sequence