Experiment: R2A with 3-octanone 5.31033333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS00110 and ABIE41_RS00115 are separated by 126 nucleotides ABIE41_RS00115 and ABIE41_RS00120 are separated by 83 nucleotides ABIE41_RS00120 and ABIE41_RS00125 are separated by 118 nucleotides
ABIE41_RS00110: ABIE41_RS00110 - fumarate hydratase, at 15,894 to 17,522
_RS00110
ABIE41_RS00115: ABIE41_RS00115 - PTS IIA-like nitrogen regulatory protein PtsN, at 17,649 to 18,110
_RS00115
ABIE41_RS00120: ABIE41_RS00120 - ribosome-associated translation inhibitor RaiA, at 18,194 to 18,781
_RS00120
ABIE41_RS00125: ABIE41_RS00125 - RNA polymerase factor sigma-54, at 18,900 to 20,426
_RS00125
Position (kb) 17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 16.765 kb on + strand, within ABIE41_RS00110 at 16.765 kb on + strand, within ABIE41_RS00110 at 16.766 kb on - strand, within ABIE41_RS00110 at 16.766 kb on - strand, within ABIE41_RS00110 at 16.766 kb on - strand, within ABIE41_RS00110 at 16.840 kb on + strand, within ABIE41_RS00110 at 16.841 kb on - strand, within ABIE41_RS00110 at 16.987 kb on + strand, within ABIE41_RS00110 at 17.020 kb on + strand, within ABIE41_RS00110 at 17.021 kb on - strand, within ABIE41_RS00110 at 17.116 kb on + strand, within ABIE41_RS00110 at 17.117 kb on - strand, within ABIE41_RS00110 at 17.196 kb on - strand, within ABIE41_RS00110 at 17.269 kb on + strand, within ABIE41_RS00110 at 17.270 kb on - strand, within ABIE41_RS00110 at 17.270 kb on - strand, within ABIE41_RS00110 at 17.513 kb on + strand at 17.513 kb on + strand at 17.514 kb on - strand at 17.514 kb on - strand at 17.514 kb on - strand at 17.515 kb on + strand at 17.516 kb on - strand at 17.589 kb on - strand at 18.195 kb on + strand at 18.195 kb on + strand at 18.196 kb on - strand at 18.196 kb on - strand at 18.196 kb on - strand at 18.196 kb on - strand at 18.196 kb on - strand at 18.249 kb on + strand at 18.250 kb on - strand at 18.251 kb on + strand at 18.251 kb on + strand at 18.251 kb on + strand at 18.251 kb on + strand at 18.251 kb on + strand at 18.251 kb on + strand at 18.252 kb on - strand at 18.252 kb on - strand at 18.252 kb on - strand at 18.252 kb on - strand at 18.252 kb on - strand at 18.252 kb on - strand at 18.444 kb on + strand, within ABIE41_RS00120 at 18.444 kb on + strand, within ABIE41_RS00120 at 18.444 kb on + strand, within ABIE41_RS00120 at 18.444 kb on + strand, within ABIE41_RS00120 at 18.444 kb on + strand, within ABIE41_RS00120 at 18.444 kb on + strand, within ABIE41_RS00120 at 18.445 kb on - strand, within ABIE41_RS00120 at 18.445 kb on - strand, within ABIE41_RS00120 at 18.445 kb on - strand, within ABIE41_RS00120 at 18.445 kb on - strand, within ABIE41_RS00120 at 18.445 kb on - strand, within ABIE41_RS00120 at 18.445 kb on - strand, within ABIE41_RS00120 at 18.564 kb on + strand, within ABIE41_RS00120 at 18.564 kb on + strand, within ABIE41_RS00120 at 18.565 kb on - strand, within ABIE41_RS00120 at 18.565 kb on - strand, within ABIE41_RS00120 at 18.565 kb on - strand, within ABIE41_RS00120 at 18.565 kb on - strand, within ABIE41_RS00120 at 18.565 kb on - strand, within ABIE41_RS00120 at 18.565 kb on - strand, within ABIE41_RS00120 at 18.565 kb on - strand, within ABIE41_RS00120 at 18.565 kb on - strand, within ABIE41_RS00120 at 18.565 kb on - strand, within ABIE41_RS00120 at 18.687 kb on + strand, within ABIE41_RS00120 at 18.687 kb on + strand, within ABIE41_RS00120 at 18.688 kb on - strand, within ABIE41_RS00120 at 18.688 kb on - strand, within ABIE41_RS00120 at 18.688 kb on - strand, within ABIE41_RS00120 at 18.690 kb on + strand, within ABIE41_RS00120 at 18.690 kb on + strand, within ABIE41_RS00120 at 18.691 kb on - strand, within ABIE41_RS00120 at 18.691 kb on - strand, within ABIE41_RS00120 at 18.691 kb on - strand, within ABIE41_RS00120 at 18.691 kb on - strand, within ABIE41_RS00120 at 18.834 kb on + strand at 18.834 kb on + strand at 18.834 kb on + strand at 18.835 kb on - strand at 18.835 kb on - strand at 18.835 kb on - strand at 18.835 kb on - strand at 18.863 kb on + strand at 18.864 kb on - strand at 18.955 kb on - strand at 19.098 kb on + strand, within ABIE41_RS00125
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM remove 16,765 + ABIE41_RS00110 0.53 -1.7 16,765 + ABIE41_RS00110 0.53 -0.4 16,766 - ABIE41_RS00110 0.54 -1.1 16,766 - ABIE41_RS00110 0.54 -0.9 16,766 - ABIE41_RS00110 0.54 +0.9 16,840 + ABIE41_RS00110 0.58 +0.0 16,841 - ABIE41_RS00110 0.58 -1.8 16,987 + ABIE41_RS00110 0.67 -1.8 17,020 + ABIE41_RS00110 0.69 -0.3 17,021 - ABIE41_RS00110 0.69 +0.0 17,116 + ABIE41_RS00110 0.75 +0.6 17,117 - ABIE41_RS00110 0.75 -0.8 17,196 - ABIE41_RS00110 0.80 -2.4 17,269 + ABIE41_RS00110 0.84 -3.6 17,270 - ABIE41_RS00110 0.84 -1.1 17,270 - ABIE41_RS00110 0.84 -1.9 17,513 + -2.1 17,513 + -1.7 17,514 - -0.1 17,514 - -1.9 17,514 - -0.0 17,515 + -1.5 17,516 - +1.0 17,589 - +0.1 18,195 + +2.3 18,195 + +0.9 18,196 - +1.4 18,196 - -1.7 18,196 - -0.0 18,196 - -0.6 18,196 - -0.3 18,249 + +0.3 18,250 - -0.1 18,251 + -1.0 18,251 + -2.2 18,251 + -0.0 18,251 + -1.6 18,251 + -0.0 18,251 + -1.9 18,252 - +0.5 18,252 - -0.2 18,252 - +1.5 18,252 - -1.1 18,252 - -0.1 18,252 - -0.2 18,444 + ABIE41_RS00120 0.43 -0.9 18,444 + ABIE41_RS00120 0.43 -0.1 18,444 + ABIE41_RS00120 0.43 +0.7 18,444 + ABIE41_RS00120 0.43 -0.2 18,444 + ABIE41_RS00120 0.43 +0.4 18,444 + ABIE41_RS00120 0.43 -0.1 18,445 - ABIE41_RS00120 0.43 +1.9 18,445 - ABIE41_RS00120 0.43 -1.6 18,445 - ABIE41_RS00120 0.43 -0.1 18,445 - ABIE41_RS00120 0.43 -0.4 18,445 - ABIE41_RS00120 0.43 +0.3 18,445 - ABIE41_RS00120 0.43 -0.1 18,564 + ABIE41_RS00120 0.63 -0.4 18,564 + ABIE41_RS00120 0.63 +0.9 18,565 - ABIE41_RS00120 0.63 -0.1 18,565 - ABIE41_RS00120 0.63 -0.1 18,565 - ABIE41_RS00120 0.63 -0.6 18,565 - ABIE41_RS00120 0.63 -1.1 18,565 - ABIE41_RS00120 0.63 -1.5 18,565 - ABIE41_RS00120 0.63 -1.9 18,565 - ABIE41_RS00120 0.63 +0.3 18,565 - ABIE41_RS00120 0.63 -0.7 18,565 - ABIE41_RS00120 0.63 +1.0 18,687 + ABIE41_RS00120 0.84 -1.1 18,687 + ABIE41_RS00120 0.84 -2.0 18,688 - ABIE41_RS00120 0.84 -0.2 18,688 - ABIE41_RS00120 0.84 +0.9 18,688 - ABIE41_RS00120 0.84 -0.1 18,690 + ABIE41_RS00120 0.84 +0.3 18,690 + ABIE41_RS00120 0.84 +0.1 18,691 - ABIE41_RS00120 0.85 -0.4 18,691 - ABIE41_RS00120 0.85 +0.0 18,691 - ABIE41_RS00120 0.85 -1.8 18,691 - ABIE41_RS00120 0.85 -2.4 18,834 + -0.9 18,834 + -0.2 18,834 + +1.2 18,835 - -0.0 18,835 - +0.0 18,835 - -0.0 18,835 - +0.3 18,863 + -0.4 18,864 - +0.4 18,955 - +0.2 19,098 + ABIE41_RS00125 0.13 +1.9
Or see this region's nucleotide sequence